[Debian-med-packaging] Bug#1009159: Add autopkgtest

[Luma]

Update on patch.

On Thu, Oct 5, 2023 at 6:25 PM Nilesh Patra <nilesh at riseup.net> wrote:
>
> On Thu, 5 Oct 2023 10:53:06 +0100 Luma <ach.lumap at gmail.com> wrote:
> > Hello,
> > Pleas find attached a patch for Bug#1009159.
>
> Thanks for the patch, but this looks wrong since it does not do anything other
> than printing out a help menu.
> We would like to actually test the binary for some data and verify whether output
> is correct.
>
> Also, it seems to even return a non-zero exit code and fails its testsuite
> in current scenario. Did you run the autopkgtests before submitting it?
>
> autopkgtest [22:37:50]: test run-unit-test: [-----------------------
> # Too few arguments handed
> # Printing help message:
> # KmerResistance-2.0 correlates genes to species from WGS data, by mapping reads with KMA
> # Options are:          Desc:                           Default:                Requirements:
> #
> #       -i              Input/query file name                                   REQUIRED
> #       -o              Output file                                             REQUIRED
> #       -t_db           Template DB                                             REQUIRED
> #       -s_db           Species DB                                              REQUIRED
> #       -id             ID threshhold                   70.0
> #       -hid            Hard ID threshhold                      1.0
> #       -dct            Depth correction threshhold     0.1
> #       -kma            alternative KMA         kma
> #       -v              Version
> #       -h              Shows this help message
> #
> autopkgtest [22:37:51]: test run-unit-test: -----------------------]
> autopkgtest [22:37:51]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
> run-unit-test        FAIL non-zero exit status 1
> autopkgtest [22:37:51]: @@@@@@@@@@@@@@@@@@@@ summary
> run-unit-test        FAIL non-zero exit status 1
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