[Debian-med-packaging] Bug#1044070: python-pauvre: FTBFS with pandas 2.0

[Étienne Mollier]

Control: tags -1 confirmed

There is a build failure reproducible by pulling python3-pandas
and python3-pandas-lib from experimental specifically.  Relevant
log that went missing from Launchpad would probably have looked
like:

	   debian/rules override_dh_auto_test
	make[1]: Entering directory '/<<PKGBUILDDIR>>'
	PYBUILDDIR="$(echo "/<<PKGBUILDDIR>>"/.pybuild/cpython3_3.*/build)" \
	&& mkdir -p "${PYBUILDDIR}/pauvre/tests/testdata/alignments" \
		"${PYBUILDDIR}/pauvre/tests/testresults" \
	&& cp -r "/<<PKGBUILDDIR>>/debian/tests/gff_files" \
		"${PYBUILDDIR}/pauvre/tests/testdata" \
	&& BUILDDIR="${PYBUILDDIR}" PATH="/<<PKGBUILDDIR>>/debian/bin:$PATH" \
		dh_auto_test \
	&& rm "${PYBUILDDIR}/input" \
	&& rm -r "${PYBUILDDIR}/pauvre/tests/testdata" \
		"${PYBUILDDIR}/pauvre/tests/testresults"
	I: pybuild base:291: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pauvre/build; python3.11 -m unittest discover -v 
	test_normal_plotting_scenario (pauvre.tests.test_synplot.libSeq_test_case.test_normal_plotting_scenario)
	This verifies that the LibSeq class is constructed with all of the ... + export PYTHONPATH=/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pauvre/build
	+ PYTHONPATH=/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pauvre/build
	+ exec python3 /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pauvre/build/pauvre/pauvre_main.py synplot --aln_dir /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pauvre/build/pauvre/tests/testdata/alignments/ --fileform pdf --gff_paths /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pauvre/build/pauvre/tests/testdata/gff_files/Bf201706.gff /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pauvre/build/pauvre/tests/testdata/gff_files/JN392469.gff /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pauvre/build/pauvre/tests/testdata/gff_files/NC016117.gff --center_on COX1 --gff_labels 'B. forskalii' 'P. bachei' 'M. leidyi'
	Traceback (most recent call last):
	  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pauvre/build/pauvre/pauvre_main.py", line 636, in <module>
	    main()
	  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pauvre/build/pauvre/pauvre_main.py", line 630, in main
	    args.func(parser, args)
	  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pauvre/build/pauvre/pauvre_main.py", line 64, in run_subtool
	    submodule.run(args)
	  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pauvre/build/pauvre/synplot.py", line 581, in run
	    synplot(args)
	  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pauvre/build/pauvre/synplot.py", line 402, in synplot
	    GFFs.append(GFFParse(gffpath, args.stop_codons, species))
	                ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
	  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py", line 75, in __init__
	    self.features.drop('dunno1', 1, inplace=True)
	TypeError: DataFrame.drop() takes from 1 to 2 positional arguments but 3 positional arguments (and 1 keyword-only argument) were given
	FAIL
	
	======================================================================
	FAIL: test_normal_plotting_scenario (pauvre.tests.test_synplot.libSeq_test_case.test_normal_plotting_scenario)
	This verifies that the LibSeq class is constructed with all of the
	----------------------------------------------------------------------
	Traceback (most recent call last):
	  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pauvre/build/pauvre/tests/test_synplot.py", line 66, in test_normal_plotting_scenario
	    self.assertEqual(0, int(data.returncode))
	AssertionError: 0 != 1

In hope this helps (including future self),
-- 
  .''`.  Étienne Mollier <emollier at debian.org>
 : :' :  gpg: 8f91 b227 c7d6 f2b1 948c  8236 793c f67e 8f0d 11da
 `. `'   sent from /dev/pts/0, please excuse my verbosity
   `-    on air: Pink Floyd - One Of These Days
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