[Debian-med-packaging] Bug#1070055: toil: FTBFS: ModuleNotFoundError: No module named 'pytz'
Santiago Vila
sanvila at debian.org
Mon Apr 29 12:41:31 BST 2024
Package: src:toil
Version: 6.1.0-3
Severity: serious
Tags: ftbfs
Dear maintainer:
During a rebuild of all packages in unstable, your package failed to build:
--------------------------------------------------------------------------------
[...]
debian/rules binary
dh binary --buildsystem=pybuild
dh_update_autotools_config -O--buildsystem=pybuild
dh_autoreconf -O--buildsystem=pybuild
dh_auto_configure -O--buildsystem=pybuild
I: pybuild base:311: python3.12 setup.py config
running config
I: pybuild base:311: python3.11 setup.py config
running config
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_build
I: pybuild base:311: /usr/bin/python3.12 setup.py build
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil
copying src/toil/exceptions.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil
copying src/toil/deferred.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil
copying src/toil/serviceManager.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil
copying src/toil/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil
copying src/toil/realtimeLogger.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil
copying src/toil/leader.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil
copying src/toil/toilState.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil
copying src/toil/bus.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil
copying src/toil/job.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil
copying src/toil/worker.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil
copying src/toil/resource.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil
copying src/toil/version.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil
copying src/toil/statsAndLogging.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil
copying src/toil/common.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/jobStores
copying src/toil/jobStores/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/jobStores
copying src/toil/jobStores/utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/jobStores
copying src/toil/jobStores/fileJobStore.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/jobStores
copying src/toil/jobStores/conftest.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/jobStores
copying src/toil/jobStores/abstractJobStore.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/jobStores
copying src/toil/jobStores/googleJobStore.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/jobStores
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/lib
copying src/toil/lib/ec2nodes.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/lib
copying src/toil/lib/exceptions.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/lib
copying src/toil/lib/resources.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/lib
copying src/toil/lib/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/lib
copying src/toil/lib/docker.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/lib
copying src/toil/lib/threading.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/lib
copying src/toil/lib/objects.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/lib
copying src/toil/lib/throttle.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/lib
copying src/toil/lib/expando.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/lib
copying src/toil/lib/memoize.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/lib
copying src/toil/lib/accelerators.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/lib
copying src/toil/lib/retry.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/lib
copying src/toil/lib/humanize.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/lib
copying src/toil/lib/iterables.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/lib
copying src/toil/lib/generatedEC2Lists.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/lib
copying src/toil/lib/compatibility.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/lib
copying src/toil/lib/bioio.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/lib
copying src/toil/lib/misc.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/lib
copying src/toil/lib/io.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/lib
copying src/toil/lib/ec2.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/lib
copying src/toil/lib/conversions.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/lib
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/cwl
copying src/toil/cwl/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/cwl
copying src/toil/cwl/utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/cwl
copying src/toil/cwl/cwltoil.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/cwl
copying src/toil/cwl/conftest.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/cwl
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/batchSystems
copying src/toil/batchSystems/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/batchSystems
copying src/toil/batchSystems/abstractGridEngineBatchSystem.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/batchSystems
copying src/toil/batchSystems/singleMachine.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/batchSystems
copying src/toil/batchSystems/lsf.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/batchSystems
copying src/toil/batchSystems/cleanup_support.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/batchSystems
copying src/toil/batchSystems/awsBatch.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/batchSystems
copying src/toil/batchSystems/gridengine.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/batchSystems
copying src/toil/batchSystems/contained_executor.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/batchSystems
copying src/toil/batchSystems/registry.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/batchSystems
copying src/toil/batchSystems/lsfHelper.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/batchSystems
copying src/toil/batchSystems/local_support.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/batchSystems
copying src/toil/batchSystems/htcondor.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/batchSystems
copying src/toil/batchSystems/kubernetes.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/batchSystems
copying src/toil/batchSystems/torque.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/batchSystems
copying src/toil/batchSystems/options.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/batchSystems
copying src/toil/batchSystems/slurm.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/batchSystems
copying src/toil/batchSystems/abstractBatchSystem.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/batchSystems
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/provisioners
copying src/toil/provisioners/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/provisioners
copying src/toil/provisioners/abstractProvisioner.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/provisioners
copying src/toil/provisioners/gceProvisioner.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/provisioners
copying src/toil/provisioners/node.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/provisioners
copying src/toil/provisioners/clusterScaler.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/provisioners
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/fileStores
copying src/toil/fileStores/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/fileStores
copying src/toil/fileStores/cachingFileStore.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/fileStores
copying src/toil/fileStores/abstractFileStore.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/fileStores
copying src/toil/fileStores/nonCachingFileStore.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/fileStores
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/test
copying src/toil/test/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/test
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/wdl
copying src/toil/wdl/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/wdl
copying src/toil/wdl/wdltoil.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/wdl
copying src/toil/wdl/utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/wdl
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/options
copying src/toil/options/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/options
copying src/toil/options/wdl.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/options
copying src/toil/options/common.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/options
copying src/toil/options/cwl.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/options
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/utils
copying src/toil/utils/toilClean.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/utils
copying src/toil/utils/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/utils
copying src/toil/utils/toilUpdateEC2Instances.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/utils
copying src/toil/utils/toilDebugFile.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/utils
copying src/toil/utils/toilStats.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/utils
copying src/toil/utils/toilDestroyCluster.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/utils
copying src/toil/utils/toilKill.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/utils
copying src/toil/utils/toilRsyncCluster.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/utils
copying src/toil/utils/toilServer.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/utils
copying src/toil/utils/toilMain.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/utils
copying src/toil/utils/toilConfig.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/utils
copying src/toil/utils/toilDebugJob.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/utils
copying src/toil/utils/toilSshCluster.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/utils
copying src/toil/utils/toilLaunchCluster.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/utils
copying src/toil/utils/toilStatus.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/utils
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/server
copying src/toil/server/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/server
copying src/toil/server/celery_app.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/server
copying src/toil/server/utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/server
copying src/toil/server/app.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/server
copying src/toil/server/wsgi_app.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/server
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/jobStores/aws
copying src/toil/jobStores/aws/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/jobStores/aws
copying src/toil/jobStores/aws/utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/jobStores/aws
copying src/toil/jobStores/aws/jobStore.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/jobStores/aws
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/lib/aws
copying src/toil/lib/aws/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/lib/aws
copying src/toil/lib/aws/session.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/lib/aws
copying src/toil/lib/aws/utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/lib/aws
copying src/toil/lib/aws/ami.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/lib/aws
copying src/toil/lib/aws/iam.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/lib/aws
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/lib/encryption
copying src/toil/lib/encryption/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/lib/encryption
copying src/toil/lib/encryption/_dummy.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/lib/encryption
copying src/toil/lib/encryption/conftest.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/lib/encryption
copying src/toil/lib/encryption/_nacl.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/lib/encryption
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/batchSystems/mesos
copying src/toil/batchSystems/mesos/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/batchSystems/mesos
copying src/toil/batchSystems/mesos/executor.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/batchSystems/mesos
copying src/toil/batchSystems/mesos/conftest.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/batchSystems/mesos
copying src/toil/batchSystems/mesos/batchSystem.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/batchSystems/mesos
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/batchSystems/mesos/test
copying src/toil/batchSystems/mesos/test/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/batchSystems/mesos/test
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/provisioners/aws
copying src/toil/provisioners/aws/awsProvisioner.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/provisioners/aws
copying src/toil/provisioners/aws/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/provisioners/aws
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/test/jobStores
copying src/toil/test/jobStores/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/test/jobStores
copying src/toil/test/jobStores/jobStoreTest.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/test/jobStores
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/test/lib
copying src/toil/test/lib/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/test/lib
copying src/toil/test/lib/test_conversions.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/test/lib
copying src/toil/test/lib/test_ec2.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/test/lib
copying src/toil/test/lib/dockerTest.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/test/lib
copying src/toil/test/lib/test_misc.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/test/lib
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/test/docs
copying src/toil/test/docs/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/test/docs
copying src/toil/test/docs/scriptsTest.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/test/docs
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/test/cwl
copying src/toil/test/cwl/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/test/cwl
copying src/toil/test/cwl/conftest.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/test/cwl
copying src/toil/test/cwl/cwlTest.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/test/cwl
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/test/batchSystems
copying src/toil/test/batchSystems/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/test/batchSystems
copying src/toil/test/batchSystems/batchSystemTest.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/test/batchSystems
copying src/toil/test/batchSystems/test_lsf_helper.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/test/batchSystems
copying src/toil/test/batchSystems/test_slurm.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/test/batchSystems
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/test/cactus
copying src/toil/test/cactus/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/test/cactus
copying src/toil/test/cactus/test_cactus_integration.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/test/cactus
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/test/provisioners
copying src/toil/test/provisioners/clusterTest.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/test/provisioners
copying src/toil/test/provisioners/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/test/provisioners
copying src/toil/test/provisioners/restartScript.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/test/provisioners
copying src/toil/test/provisioners/gceProvisionerTest.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/test/provisioners
copying src/toil/test/provisioners/clusterScalerTest.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/test/provisioners
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copying src/toil/test/mesos/helloWorld.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/test/mesos
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copying src/toil/test/src/autoDeploymentTest.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/test/src
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copying src/toil/test/src/helloWorldTest.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/test/src
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copying src/toil/server/api_spec/workflow_execution_service.swagger.yaml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil/server/api_spec
I: pybuild base:311: /usr/bin/python3 setup.py build
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil
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copying src/toil/test/lib/aws/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/lib/aws
copying src/toil/test/lib/aws/test_iam.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/lib/aws
copying src/toil/test/lib/aws/test_utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/lib/aws
copying src/toil/test/lib/aws/test_s3.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/lib/aws
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/provisioners/aws
copying src/toil/test/provisioners/aws/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/provisioners/aws
copying src/toil/test/provisioners/aws/awsProvisionerTest.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/provisioners/aws
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/server/wes
copying src/toil/server/wes/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/server/wes
copying src/toil/server/wes/tasks.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/server/wes
copying src/toil/server/wes/abstract_backend.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/server/wes
copying src/toil/server/wes/toil_backend.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/server/wes
copying src/toil/server/wes/amazon_wes_utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/server/wes
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/server/cli
copying src/toil/server/cli/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/server/cli
copying src/toil/server/cli/wes_cwl_runner.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/server/cli
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/server/api_spec
copying src/toil/server/api_spec/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/server/api_spec
copying src/toil/test/cwl/colon_test_output_job.yaml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/cwl
copying src/toil/test/cwl/conditional_wf.yaml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/cwl
copying src/toil/test/cwl/mpi_simple.cwl -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/cwl
copying src/toil/test/cwl/revsort2.cwl -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/cwl
copying src/toil/test/cwl/stream.cwl -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/cwl
copying src/toil/test/cwl/download_directory.cwl -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/cwl
copying src/toil/test/cwl/preemptible_expression.cwl -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/cwl
copying src/toil/test/cwl/download_subdirectory.cwl -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/cwl
copying src/toil/test/cwl/directory_from_directory.cwl -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/cwl
copying src/toil/test/cwl/echo_string_scatter_capture_stdout.cwl -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/cwl
copying src/toil/test/cwl/echo-stdout-log-dir.cwl -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/cwl
copying src/toil/test/cwl/echo-stderr.cwl -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/cwl
copying src/toil/test/cwl/load_contents.cwl -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/cwl
copying src/toil/test/cwl/alwaysfails.cwl -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/cwl
copying src/toil/test/cwl/test_filename_conflict_detection_at_root.cwl -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/cwl
copying src/toil/test/cwl/preemptible.cwl -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/cwl
copying src/toil/test/cwl/test_filename_conflict_detection.cwl -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/cwl
copying src/toil/test/cwl/file_from_directory.cwl -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/cwl
copying src/toil/test/cwl/colon_test_output.cwl -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/cwl
copying src/toil/test/cwl/seqtk_seq.cwl -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/cwl
copying src/toil/test/cwl/glob_dir.cwl -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/cwl
copying src/toil/test/cwl/revtool2.cwl -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/cwl
copying src/toil/test/cwl/s3_secondary_file.cwl -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/cwl
copying src/toil/test/cwl/echo.cwl -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/cwl
copying src/toil/test/cwl/download.cwl -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/cwl
copying src/toil/test/cwl/echo_string.cwl -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/cwl
copying src/toil/test/cwl/conditional_wf.cwl -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/cwl
copying src/toil/test/cwl/sorttool.cwl -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/cwl
copying src/toil/test/cwl/test_filename_conflict_resolution.cwl -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/cwl
copying src/toil/test/cwl/revtool.cwl -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/cwl
copying src/toil/test/cwl/revsort.cwl -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/cwl
copying src/toil/test/cwl/nvidia_smi.cwl -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/cwl
copying src/toil/server/api_spec/workflow_execution_service.swagger.yaml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/server/api_spec
PYTHONPATH=/<<PKGBUILDDIR>>/src /usr/bin/make -C docs man SPHINXOPTS=""
make[2]: Entering directory '/<<PKGBUILDDIR>>/docs'
Running Sphinx v7.2.6
Configuration error:
There is a programmable error in your configuration file:
Traceback (most recent call last):
File "/usr/lib/python3/dist-packages/sphinx/config.py", line 358, in eval_config_file
exec(code, namespace) # NoQA: S102
^^^^^^^^^^^^^^^^^^^^^
File "/<<PKGBUILDDIR>>/docs/conf.py", line 17, in <module>
import toil.version
File "/<<PKGBUILDDIR>>/src/toil/__init__.py", line 25, in <module>
from pytz import timezone
ModuleNotFoundError: No module named 'pytz'
make[2]: *** [Makefile:20: man] Error 2
make[2]: Leaving directory '/<<PKGBUILDDIR>>/docs'
make[1]: *** [debian/rules:15: override_dh_auto_build] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:11: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------
The above is just how the build ends and not necessarily the most relevant part.
If required, the full build log is available here:
https://people.debian.org/~sanvila/build-logs/202404/
About the archive rebuild: The build was made on virtual machines
of type m6a.large from AWS, using sbuild and a reduced chroot
with only build-essential packages.
If you could not reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and affects, so that this is still visible in the BTS web
page for this package.
Thanks.
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