[Debian-med-packaging] Bug#1078394: brian: FTBFS: test failed
Lucas Nussbaum
lucas at debian.org
Sat Aug 10 07:01:12 BST 2024
Source: brian
Version: 2.5.4-4
Severity: serious
Justification: FTBFS
Tags: trixie sid ftbfs
User: lucas at debian.org
Usertags: ftbfs-20240809 ftbfs-trixie
Hi,
During a rebuild of all packages in sid, your package failed to build
on amd64.
Relevant part (hopefully):
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> dh_auto_install
> I: pybuild plugin_pyproject:178: Copying package built for python3.12 to destdir
> echo "backend : Agg" >| /<<PKGBUILDDIR>>/build/matplotlibrc
> : # Only now lets build docs
> mkdir -p docs_sphinx/_static # to avoid crashes with older sphinx (e.g. on jaunty)
> export PYTHONPATH=$(/bin/ls -d /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.12/*-packages); \
> { cd docs_sphinx; sphinx-build -a -E -D html_last_updated_fmt="Dec 29 2023" -b html . ../docs; }
> Running Sphinx v7.4.7
> WARNING brian2.hears is deprecated and will be removed in a future release, please use the brian2hears package available at https://brian2hears.readthedocs.io/. If you really want to keep using it, note that it is a bridge between Brian 2 and Brian Hears from Brian 1. This is not guaranteed to work in all cases that brian.hears works. See the limitations in the online documentation. [brian2.hears]
> Creating file ./reference/brian2.__init__.check_cache.rst.
> Creating file ./reference/brian2.__init__.clear_cache.rst.
> Creating file ./reference/brian2.hears.BridgeSound.rst.
> Creating file ./reference/brian2.hears.FilterbankGroup.rst.
> Creating file ./reference/brian2.hears.Sound.rst.
> Creating file ./reference/brian2.hears.WrappedSound.rst.
> Creating file ./reference/brian2.hears.convert_unit_b1_to_b2.rst.
> Creating file ./reference/brian2.hears.convert_unit_b2_to_b1.rst.
> Creating file ./reference/brian2.hears.modify_arg.rst.
> Creating file ./reference/brian2.hears.wrap_units.rst.
> Creating file ./reference/brian2.hears.wrap_units_class.rst.
> Creating file ./reference/brian2.hears.wrap_units_property.rst.
> Creating file ./reference/brian2.only.restore_initial_state.rst.
> Creating file ./reference/brian2.rst.
> Creating file ./reference/brian2.codegen.codeobject.CodeObject.rst.
> Creating file ./reference/brian2.codegen.codeobject.check_compiler_kwds.rst.
> Creating file ./reference/brian2.codegen.codeobject.constant_or_scalar.rst.
> Creating file ./reference/brian2.codegen.codeobject.create_runner_codeobj.rst.
> Creating file ./reference/brian2.codegen.cpp_prefs.C99Check.rst.
> Creating file ./reference/brian2.codegen.cpp_prefs.compiler_supports_c99.rst.
> Creating file ./reference/brian2.codegen.cpp_prefs.get_compiler_and_args.rst.
> Creating file ./reference/brian2.codegen.cpp_prefs.get_msvc_env.rst.
> Creating file ./reference/brian2.codegen.cpp_prefs.has_flag.rst.
> Creating file ./reference/brian2.codegen.optimisation.ArithmeticSimplifier.rst.
> Creating file ./reference/brian2.codegen.optimisation.Simplifier.rst.
> Creating file ./reference/brian2.codegen.optimisation.cancel_identical_terms.rst.
> Creating file ./reference/brian2.codegen.optimisation.collect.rst.
> Creating file ./reference/brian2.codegen.optimisation.collect_commutative.rst.
> Creating file ./reference/brian2.codegen.optimisation.evaluate_expr.rst.
> Creating file ./reference/brian2.codegen.optimisation.expression_complexity.rst.
> Creating file ./reference/brian2.codegen.optimisation.optimise_statements.rst.
> Creating file ./reference/brian2.codegen.optimisation.reduced_node.rst.
> Creating file ./reference/brian2.codegen.permutation_analysis.OrderDependenceError.rst.
> Creating file ./reference/brian2.codegen.permutation_analysis.check_for_order_independence.rst.
> Creating file ./reference/brian2.codegen.statements.Statement.rst.
> Creating file ./reference/brian2.codegen.templates.CodeObjectTemplate.rst.
> Creating file ./reference/brian2.codegen.templates.LazyTemplateLoader.rst.
> Creating file ./reference/brian2.codegen.templates.MultiTemplate.rst.
> Creating file ./reference/brian2.codegen.templates.Templater.rst.
> Creating file ./reference/brian2.codegen.templates.autoindent.rst.
> Creating file ./reference/brian2.codegen.templates.autoindent_postfilter.rst.
> Creating file ./reference/brian2.codegen.templates.variables_to_array_names.rst.
> Creating file ./reference/brian2.codegen.translation.LineInfo.rst.
> Creating file ./reference/brian2.codegen.translation.analyse_identifiers.rst.
> Creating file ./reference/brian2.codegen.translation.get_identifiers_recursively.rst.
> Creating file ./reference/brian2.codegen.translation.is_scalar_expression.rst.
> Creating file ./reference/brian2.codegen.translation.make_statements.rst.
> Creating file ./reference/brian2.codegen.rst.
> Creating file ./reference/brian2.codegen.generators.GSL_generator.GSLCPPCodeGenerator.rst.
> Creating file ./reference/brian2.codegen.generators.GSL_generator.GSLCodeGenerator.rst.
> Creating file ./reference/brian2.codegen.generators.GSL_generator.GSLCythonCodeGenerator.rst.
> Creating file ./reference/brian2.codegen.generators.GSL_generator.valid_gsl_dir.rst.
> Creating file ./reference/brian2.codegen.generators.base.CodeGenerator.rst.
> Creating file ./reference/brian2.codegen.generators.cpp_generator.CPPCodeGenerator.rst.
> Creating file ./reference/brian2.codegen.generators.cpp_generator.c_data_type.rst.
> Creating file ./reference/brian2.codegen.generators.cython_generator.CythonCodeGenerator.rst.
> Creating file ./reference/brian2.codegen.generators.cython_generator.CythonNodeRenderer.rst.
> Creating file ./reference/brian2.codegen.generators.cython_generator.get_cpp_dtype.rst.
> Creating file ./reference/brian2.codegen.generators.cython_generator.get_numpy_dtype.rst.
> Creating file ./reference/brian2.codegen.generators.numpy_generator.NumpyCodeGenerator.rst.
> Creating file ./reference/brian2.codegen.generators.numpy_generator.VectorisationError.rst.
> Creating file ./reference/brian2.codegen.generators.numpy_generator.ceil_func.rst.
> Creating file ./reference/brian2.codegen.generators.numpy_generator.clip_func.rst.
> Creating file ./reference/brian2.codegen.generators.numpy_generator.floor_func.rst.
> Creating file ./reference/brian2.codegen.generators.numpy_generator.int_func.rst.
> Creating file ./reference/brian2.codegen.generators.numpy_generator.poisson_func.rst.
> Creating file ./reference/brian2.codegen.generators.numpy_generator.rand_func.rst.
> Creating file ./reference/brian2.codegen.generators.numpy_generator.randn_func.rst.
> Creating file ./reference/brian2.codegen.generators.rst.
> Creating file ./reference/brian2.codegen.runtime.rst.
> Creating file ./reference/brian2.codegen.runtime.GSLcython_rt.GSLcython_rt.GSLCompileError.rst.
> Creating file ./reference/brian2.codegen.runtime.GSLcython_rt.GSLcython_rt.GSLCythonCodeObject.rst.
> Creating file ./reference/brian2.codegen.runtime.GSLcython_rt.GSLcython_rt.IntegrationError.rst.
> Creating file ./reference/brian2.codegen.runtime.GSLcython_rt.rst.
> Creating file ./reference/brian2.codegen.runtime.cython_rt.cython_rt.CythonCodeObject.rst.
> Creating file ./reference/brian2.codegen.runtime.cython_rt.extension_manager.CythonExtensionManager.rst.
> Creating file ./reference/brian2.codegen.runtime.cython_rt.extension_manager.get_cython_cache_dir.rst.
> Creating file ./reference/brian2.codegen.runtime.cython_rt.extension_manager.get_cython_extensions.rst.
> Creating file ./reference/brian2.codegen.runtime.cython_rt.extension_manager.simplify_path_env_var.rst.
> Creating file ./reference/brian2.codegen.runtime.cython_rt.extension_manager.cython_extension_manager.rst.
> Creating file ./reference/brian2.codegen.runtime.cython_rt.rst.
> Creating file ./reference/brian2.codegen.runtime.numpy_rt.numpy_rt.LazyArange.rst.
> Creating file ./reference/brian2.codegen.runtime.numpy_rt.numpy_rt.NumpyCodeObject.rst.
> Creating file ./reference/brian2.codegen.runtime.numpy_rt.rst.
> Creating file ./reference/brian2.core.base.BrianObject.rst.
> Creating file ./reference/brian2.core.base.BrianObjectException.rst.
> Creating file ./reference/brian2.core.base.brian_object_exception.rst.
> Creating file ./reference/brian2.core.base.device_override.rst.
> Creating file ./reference/brian2.core.base.weakproxy_with_fallback.rst.
> Creating file ./reference/brian2.core.clocks.Clock.rst.
> Creating file ./reference/brian2.core.clocks.DefaultClockProxy.rst.
> Creating file ./reference/brian2.core.clocks.check_dt.rst.
> Creating file ./reference/brian2.core.clocks.defaultclock.rst.
> Creating file ./reference/brian2.core.core_preferences.default_float_dtype_validator.rst.
> Creating file ./reference/brian2.core.core_preferences.dtype_repr.rst.
> Creating file ./reference/brian2.core.functions.Function.rst.
> Creating file ./reference/brian2.core.functions.FunctionImplementation.rst.
> Creating file ./reference/brian2.core.functions.FunctionImplementationContainer.rst.
> Creating file ./reference/brian2.core.functions.SymbolicConstant.rst.
> Creating file ./reference/brian2.core.functions.exprel.rst.
> Creating file ./reference/brian2.core.functions.declare_types.rst.
> Creating file ./reference/brian2.core.functions.implementation.rst.
> Creating file ./reference/brian2.core.functions.timestep.rst.
> Creating file ./reference/brian2.core.magic.MagicError.rst.
> Creating file ./reference/brian2.core.magic.MagicNetwork.rst.
> Creating file ./reference/brian2.core.magic.collect.rst.
> Creating file ./reference/brian2.core.magic.get_objects_in_namespace.rst.
> Creating file ./reference/brian2.core.magic.restore.rst.
> Creating file ./reference/brian2.core.magic.run.rst.
> Creating file ./reference/brian2.core.magic.start_scope.rst.
> Creating file ./reference/brian2.core.magic.stop.rst.
> Creating file ./reference/brian2.core.magic.store.rst.
> Creating file ./reference/brian2.core.magic.magic_network.rst.
> Creating file ./reference/brian2.core.names.Nameable.rst.
> Creating file ./reference/brian2.core.names.find_name.rst.
> Creating file ./reference/brian2.core.namespace.get_local_namespace.rst.
> Creating file ./reference/brian2.core.network.Network.rst.
> Creating file ./reference/brian2.core.network.ProfilingSummary.rst.
> Creating file ./reference/brian2.core.network.SchedulingSummary.rst.
> Creating file ./reference/brian2.core.network.TextReport.rst.
> Creating file ./reference/brian2.core.network.profiling_summary.rst.
> Creating file ./reference/brian2.core.network.schedule_propagation_offset.rst.
> Creating file ./reference/brian2.core.network.scheduling_summary.rst.
> Creating file ./reference/brian2.core.operations.NetworkOperation.rst.
> Creating file ./reference/brian2.core.operations.network_operation.rst.
> Creating file ./reference/brian2.core.preferences.BrianGlobalPreferences.rst.
> Creating file ./reference/brian2.core.preferences.BrianGlobalPreferencesView.rst.
> Creating file ./reference/brian2.core.preferences.BrianPreference.rst.
> Creating file ./reference/brian2.core.preferences.DefaultValidator.rst.
> Creating file ./reference/brian2.core.preferences.ErrorRaiser.rst.
> Creating file ./reference/brian2.core.preferences.PreferenceError.rst.
> Creating file ./reference/brian2.core.preferences.check_preference_name.rst.
> Creating file ./reference/brian2.core.preferences.parse_preference_name.rst.
> Creating file ./reference/brian2.core.preferences.brian_prefs.rst.
> Creating file ./reference/brian2.core.preferences.prefs.rst.
> Creating file ./reference/brian2.core.spikesource.SpikeSource.rst.
> Creating file ./reference/brian2.core.tracking.InstanceFollower.rst.
> Creating file ./reference/brian2.core.tracking.InstanceTrackerSet.rst.
> Creating file ./reference/brian2.core.tracking.Trackable.rst.
> Creating file ./reference/brian2.core.variables.ArrayVariable.rst.
> Creating file ./reference/brian2.core.variables.AuxiliaryVariable.rst.
> Creating file ./reference/brian2.core.variables.Constant.rst.
> Creating file ./reference/brian2.core.variables.DynamicArrayVariable.rst.
> Creating file ./reference/brian2.core.variables.LinkedVariable.rst.
> Creating file ./reference/brian2.core.variables.Subexpression.rst.
> Creating file ./reference/brian2.core.variables.Variable.rst.
> Creating file ./reference/brian2.core.variables.VariableView.rst.
> Creating file ./reference/brian2.core.variables.Variables.rst.
> Creating file ./reference/brian2.core.variables.get_dtype.rst.
> Creating file ./reference/brian2.core.variables.get_dtype_str.rst.
> Creating file ./reference/brian2.core.variables.linked_var.rst.
> Creating file ./reference/brian2.core.variables.variables_by_owner.rst.
> Creating file ./reference/brian2.core.rst.
> Creating file ./reference/brian2.devices.device.CurrentDeviceProxy.rst.
> Creating file ./reference/brian2.devices.device.Device.rst.
> Creating file ./reference/brian2.devices.device.Dummy.rst.
> Creating file ./reference/brian2.devices.device.RuntimeDevice.rst.
> Creating file ./reference/brian2.devices.device.auto_target.rst.
> Creating file ./reference/brian2.devices.device.get_device.rst.
> Creating file ./reference/brian2.devices.device.reinit_and_delete.rst.
> Creating file ./reference/brian2.devices.device.reinit_devices.rst.
> Creating file ./reference/brian2.devices.device.reset_device.rst.
> Creating file ./reference/brian2.devices.device.seed.rst.
> Creating file ./reference/brian2.devices.device.set_device.rst.
> Creating file ./reference/brian2.devices.device.active_device.rst.
> Creating file ./reference/brian2.devices.device.device.rst.
> Creating file ./reference/brian2.devices.device.runtime_device.rst.
> Creating file ./reference/brian2.devices.rst.
> Creating file ./reference/brian2.devices.cpp_standalone.GSLcodeobject.GSLCPPStandaloneCodeObject.rst.
> Creating file ./reference/brian2.devices.cpp_standalone.codeobject.CPPStandaloneCodeObject.rst.
> Creating file ./reference/brian2.devices.cpp_standalone.codeobject.generate_rand_code.rst.
> Creating file ./reference/brian2.devices.cpp_standalone.codeobject.openmp_pragma.rst.
> Creating file ./reference/brian2.devices.cpp_standalone.device.CPPStandaloneDevice.rst.
> Creating file ./reference/brian2.devices.cpp_standalone.device.CPPWriter.rst.
> Creating file ./reference/brian2.devices.cpp_standalone.device.RunFunctionContext.rst.
> Creating file ./reference/brian2.devices.cpp_standalone.device.invert_dict.rst.
> Creating file ./reference/brian2.devices.cpp_standalone.device.cpp_standalone_device.rst.
> Creating file ./reference/brian2.devices.cpp_standalone.rst.
> Creating file ./reference/brian2.equations.codestrings.CodeString.rst.
> Creating file ./reference/brian2.equations.codestrings.Expression.rst.
> Creating file ./reference/brian2.equations.codestrings.Statements.rst.
> Creating file ./reference/brian2.equations.codestrings.is_constant_over_dt.rst.
> Creating file ./reference/brian2.equations.equations.EquationError.rst.
> Creating file ./reference/brian2.equations.equations.Equations.rst.
> Creating file ./reference/brian2.equations.equations.SingleEquation.rst.
> Creating file ./reference/brian2.equations.equations.check_identifier_basic.rst.
> Creating file ./reference/brian2.equations.equations.check_identifier_constants.rst.
> Creating file ./reference/brian2.equations.equations.check_identifier_functions.rst.
> Creating file ./reference/brian2.equations.equations.check_identifier_reserved.rst.
> Creating file ./reference/brian2.equations.equations.check_identifier_units.rst.
> Creating file ./reference/brian2.equations.equations.check_subexpressions.rst.
> Creating file ./reference/brian2.equations.equations.dimensions_and_type_from_string.rst.
> Creating file ./reference/brian2.equations.equations.extract_constant_subexpressions.rst.
> Creating file ./reference/brian2.equations.equations.is_stateful.rst.
> Creating file ./reference/brian2.equations.equations.parse_string_equations.rst.
> Creating file ./reference/brian2.equations.refractory.add_refractoriness.rst.
> Creating file ./reference/brian2.equations.refractory.check_identifier_refractory.rst.
> Creating file ./reference/brian2.equations.unitcheck.check_dimensions.rst.
> Creating file ./reference/brian2.equations.unitcheck.check_units_statements.rst.
> Creating file ./reference/brian2.equations.rst.
> Creating file ./reference/brian2.groups.group.CodeRunner.rst.
> Creating file ./reference/brian2.groups.group.Group.rst.
> Creating file ./reference/brian2.groups.group.IndexWrapper.rst.
> Creating file ./reference/brian2.groups.group.Indexing.rst.
> Creating file ./reference/brian2.groups.group.VariableOwner.rst.
> Creating file ./reference/brian2.groups.group.get_dtype.rst.
> Creating file ./reference/brian2.groups.neurongroup.NeuronGroup.rst.
> Creating file ./reference/brian2.groups.neurongroup.Resetter.rst.
> Creating file ./reference/brian2.groups.neurongroup.StateUpdater.rst.
> Creating file ./reference/brian2.groups.neurongroup.SubexpressionUpdater.rst.
> Creating file ./reference/brian2.groups.neurongroup.Thresholder.rst.
> Creating file ./reference/brian2.groups.neurongroup.check_identifier_pre_post.rst.
> Creating file ./reference/brian2.groups.neurongroup.to_start_stop.rst.
> Creating file ./reference/brian2.groups.subgroup.Subgroup.rst.
> Creating file ./reference/brian2.groups.rst.
> Creating file ./reference/brian2.importexport.dictlike.DictImportExport.rst.
> Creating file ./reference/brian2.importexport.dictlike.PandasImportExport.rst.
> Creating file ./reference/brian2.importexport.importexport.ImportExport.rst.
> Creating file ./reference/brian2.importexport.rst.
> Creating file ./reference/brian2.input.binomial.BinomialFunction.rst.
> Creating file ./reference/brian2.input.poissongroup.PoissonGroup.rst.
> Creating file ./reference/brian2.input.poissoninput.PoissonInput.rst.
> Creating file ./reference/brian2.input.spikegeneratorgroup.SpikeGeneratorGroup.rst.
> Creating file ./reference/brian2.input.timedarray.TimedArray.rst.
> Creating file ./reference/brian2.input.rst.
> Creating file ./reference/brian2.memory.dynamicarray.DynamicArray.rst.
> Creating file ./reference/brian2.memory.dynamicarray.DynamicArray1D.rst.
> Creating file ./reference/brian2.memory.dynamicarray.getslices.rst.
> Creating file ./reference/brian2.memory.rst.
> Creating file ./reference/brian2.monitors.ratemonitor.PopulationRateMonitor.rst.
> Creating file ./reference/brian2.monitors.spikemonitor.EventMonitor.rst.
> Creating file ./reference/brian2.monitors.spikemonitor.SpikeMonitor.rst.
> Creating file ./reference/brian2.monitors.statemonitor.StateMonitor.rst.
> Creating file ./reference/brian2.monitors.statemonitor.StateMonitorView.rst.
> Creating file ./reference/brian2.monitors.rst.
> Creating file ./reference/brian2.parsing.bast.BrianASTRenderer.rst.
> Creating file ./reference/brian2.parsing.bast.brian_ast.rst.
> Creating file ./reference/brian2.parsing.bast.brian_dtype_from_dtype.rst.
> Creating file ./reference/brian2.parsing.bast.brian_dtype_from_value.rst.
> Creating file ./reference/brian2.parsing.bast.is_boolean.rst.
> Creating file ./reference/brian2.parsing.bast.is_boolean_dtype.rst.
> Creating file ./reference/brian2.parsing.bast.is_float.rst.
> Creating file ./reference/brian2.parsing.bast.is_float_dtype.rst.
> Creating file ./reference/brian2.parsing.bast.is_integer.rst.
> Creating file ./reference/brian2.parsing.bast.is_integer_dtype.rst.
> Creating file ./reference/brian2.parsing.dependencies.abstract_code_dependencies.rst.
> Creating file ./reference/brian2.parsing.dependencies.get_read_write_funcs.rst.
> Creating file ./reference/brian2.parsing.expressions.is_boolean_expression.rst.
> Creating file ./reference/brian2.parsing.expressions.parse_expression_dimensions.rst.
> Creating file ./reference/brian2.parsing.functions.AbstractCodeFunction.rst.
> Creating file ./reference/brian2.parsing.functions.FunctionRewriter.rst.
> Creating file ./reference/brian2.parsing.functions.VarRewriter.rst.
> Creating file ./reference/brian2.parsing.functions.abstract_code_from_function.rst.
> Creating file ./reference/brian2.parsing.functions.extract_abstract_code_functions.rst.
> Creating file ./reference/brian2.parsing.functions.substitute_abstract_code_functions.rst.
> Creating file ./reference/brian2.parsing.rendering.CPPNodeRenderer.rst.
> Creating file ./reference/brian2.parsing.rendering.NodeRenderer.rst.
> Creating file ./reference/brian2.parsing.rendering.NumpyNodeRenderer.rst.
> Creating file ./reference/brian2.parsing.rendering.SympyNodeRenderer.rst.
> Creating file ./reference/brian2.parsing.rendering.get_node_value.rst.
> Creating file ./reference/brian2.parsing.statements.parse_statement.rst.
> Creating file ./reference/brian2.parsing.sympytools.CustomSympyPrinter.rst.
> Creating file ./reference/brian2.parsing.sympytools.check_expression_for_multiple_stateful_functions.rst.
> Creating file ./reference/brian2.parsing.sympytools.expression_complexity.rst.
> Creating file ./reference/brian2.parsing.sympytools.str_to_sympy.rst.
> Creating file ./reference/brian2.parsing.sympytools.sympy_to_str.rst.
> Creating file ./reference/brian2.parsing.sympytools.PRINTER.rst.
> Creating file ./reference/brian2.parsing.rst.
> Creating file ./reference/brian2.random.rst.
> Creating file ./reference/brian2.spatialneuron.morphology.Children.rst.
> Creating file ./reference/brian2.spatialneuron.morphology.Cylinder.rst.
> Creating file ./reference/brian2.spatialneuron.morphology.Morphology.rst.
> Creating file ./reference/brian2.spatialneuron.morphology.MorphologyIndexWrapper.rst.
> Creating file ./reference/brian2.spatialneuron.morphology.Node.rst.
> Creating file ./reference/brian2.spatialneuron.morphology.Section.rst.
> Creating file ./reference/brian2.spatialneuron.morphology.Soma.rst.
> Creating file ./reference/brian2.spatialneuron.morphology.SubMorphology.rst.
> Creating file ./reference/brian2.spatialneuron.morphology.Topology.rst.
> Creating file ./reference/brian2.spatialneuron.spatialneuron.FlatMorphology.rst.
> Creating file ./reference/brian2.spatialneuron.spatialneuron.SpatialNeuron.rst.
> Creating file ./reference/brian2.spatialneuron.spatialneuron.SpatialStateUpdater.rst.
> Creating file ./reference/brian2.spatialneuron.spatialneuron.SpatialSubgroup.rst.
> Creating file ./reference/brian2.spatialneuron.rst.
> Creating file ./reference/brian2.stateupdaters.GSL.GSLContainer.rst.
> Creating file ./reference/brian2.stateupdaters.GSL.GSLStateUpdater.rst.
> Creating file ./reference/brian2.stateupdaters.GSL.gsl_rk2.rst.
> Creating file ./reference/brian2.stateupdaters.GSL.gsl_rk4.rst.
> Creating file ./reference/brian2.stateupdaters.GSL.gsl_rk8pd.rst.
> Creating file ./reference/brian2.stateupdaters.GSL.gsl_rkck.rst.
> Creating file ./reference/brian2.stateupdaters.GSL.gsl_rkf45.rst.
> Creating file ./reference/brian2.stateupdaters.base.StateUpdateMethod.rst.
> Creating file ./reference/brian2.stateupdaters.base.UnsupportedEquationsException.rst.
> Creating file ./reference/brian2.stateupdaters.base.extract_method_options.rst.
> Creating file ./reference/brian2.stateupdaters.exact.IndependentStateUpdater.rst.
> Creating file ./reference/brian2.stateupdaters.exact.LinearStateUpdater.rst.
> Creating file ./reference/brian2.stateupdaters.exact.get_linear_system.rst.
> Creating file ./reference/brian2.stateupdaters.exact.exact.rst.
> Creating file ./reference/brian2.stateupdaters.exact.independent.rst.
> Creating file ./reference/brian2.stateupdaters.exact.linear.rst.
> Creating file ./reference/brian2.stateupdaters.explicit.ExplicitStateUpdater.rst.
> Creating file ./reference/brian2.stateupdaters.explicit.diagonal_noise.rst.
> Creating file ./reference/brian2.stateupdaters.explicit.split_expression.rst.
> Creating file ./reference/brian2.stateupdaters.explicit.euler.rst.
> Creating file ./reference/brian2.stateupdaters.explicit.heun.rst.
> Creating file ./reference/brian2.stateupdaters.explicit.milstein.rst.
> Creating file ./reference/brian2.stateupdaters.explicit.rk2.rst.
> Creating file ./reference/brian2.stateupdaters.explicit.rk4.rst.
> Creating file ./reference/brian2.stateupdaters.exponential_euler.ExponentialEulerStateUpdater.rst.
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> WARNING /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.12/dist-packages/brian2/sphinxext/docscrape.py:122: UserWarning: Unknown section Explanation
> warn(f"Unknown section {key}")
> [py.warnings]
> WARNING /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.12/dist-packages/brian2/sphinxext/docscrape.py:122: UserWarning: Unknown section Explanation
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>
> /<<PKGBUILDDIR>>/docs_sphinx/examples/frompapers.Naud_et_al_2008_adex_firing_patterns.rst:23: WARNING: Title underline too short.
>
> Firing patterns in the adaptive exponential integrate-and-fire model
> -----------------------
> /<<PKGBUILDDIR>>/docs_sphinx/index.rst:50: WARNING: toctree contains reference to nonexisting document 'resources/tutorials/index'
> /<<PKGBUILDDIR>>/docs_sphinx/introduction/install.rst:28: ERROR: Unknown directive type "tabs".
>
> .. tabs::
>
> .. group-tab:: conda package
>
> We recommend installing Brian into a separate environment, see
> `conda's documentation <https://docs.conda.io/projects/conda/en/latest/user-guide/tasks/manage-environments.html>`_
> for more details.
> Brian 2 is not part of the main Anaconda distribution, but built using the community-maintained
> `conda-forge <https://conda-forge.org/>`_ project. You will therefore have to to install it from the
> `conda-forge channel <https://anaconda.org/conda-forge>`_. To do so, use::
>
> conda install -c conda-forge brian2
>
> You can also permanently add the channel to your list of channels::
>
> conda config --add channels conda-forge
>
> This has only to be done once. After that, you can install and update the brian2 packages as any other
> Anaconda package::
>
> conda install brian2
>
>
> .. group-tab:: PyPI package (``pip``)
>
> We recommend installing Brian into a separate "virtual environment", see the
> `Python Packaging User Guide <https://packaging.python.org/guides/installing-using-pip-and-virtual-environments/>`_
> for more information.
> Brian is included in the PyPI package index: https://pypi.python.org/pypi/Brian2
> You can therefore install it with the ``pip`` utility::
>
> python -m pip install brian2
>
> In rare cases where your current environment does not have access to the ``pip`` utility, you first
> have to install ``pip`` via::
>
> python -m ensurepip
>
> .. group-tab:: Ubuntu/Debian package
>
> If you are using a recent `Debian <https://debian.org>`_-based Linux distribution (Debian itself, or one if its
> derivatives like `Ubuntu <https://ubuntu.com>`_ or `Linux Mint <https://linuxmint.com/>`_), you can install Brian
> using its built-in package manager::
>
> sudo apt install python3-brian
>
> Brian releases get packaged by the `Debian Med <https://www.debian.org/devel/debian-med/>`_ team, but note that
> it might take a while until the most recent version shows up in the repository.
>
> .. group-tab:: Fedora package
>
> If you are using `Fedora Linux <https://getfedora.org/>`_, you can install Brian using its built-in package
> manager::
>
> sudo dnf install python-brian2
>
> Brian releases get packaged by the `NeuroFedora <https://docs.fedoraproject.org/en-US/neurofedora/overview/>`_ team,
> but note that it might take a while until the most recent version shows up in the repository.
>
> .. group-tab:: Spack package
>
> `Spack <https://spack.io>`_ is a flexible package manager supporting multiple versions, configurations, platforms, and compilers.
>
> After setting up Spack you can install Brian with the following command::
>
> spack install py-brian2
> /<<PKGBUILDDIR>>/docs_sphinx/introduction/install.rst:103: ERROR: Unknown directive type "tabs".
>
> .. tabs::
>
> .. group-tab:: conda package
>
> Depending on whether you added the ``conda-forge`` channel to the list of channels
> or not (see above), you either have to include it in the update command again or
> can leave it away. I.e. use::
>
> conda update -c conda-forge brian2
>
> if you did not add the channel, or::
>
> conda update brian2
>
> if you did.
>
> .. group-tab:: PyPI package (``pip``)
>
> Use the install command together with the ``--upgrade`` or ``-U`` option::
>
> python -m pip install -U brian2
>
> .. group-tab:: Ubuntu/Debian package
>
> Update the package repository and ask for an install. Note that the package will
> also be updated automatically with commands like ``sudo apt full-upgrade``::
>
> sudo apt update
> sudo apt install python3-brian
>
> .. group-tab:: Fedora package
>
> Update the package repository (not necessary in general, since it will be updated
> regularly without asking for it), and ask for an update. Note that the package will
> also be updated automatically with commands like ``sudo dnf upgrade``::
>
> sudo dnf check-update python-brian2
> sudo dnf upgrade python-brian2
> /<<PKGBUILDDIR>>/docs_sphinx/introduction/install.rst:153: ERROR: Unknown directive type "tabs".
>
> .. tabs::
>
> .. tab:: Linux and OS X
>
> On Linux and Mac OS X, the conda package will automatically install a C++ compiler.
> But even if you install Brian in a different way, you will most likely already have a
> working C++ compiler installed on your system (try calling ``g++ --version``
> in a terminal). If not, use your distribution's package manager to install a ``g++`` package.
>
> .. tab:: Windows
>
> On Windows, :ref:`runtime` (i.e. Cython) requires the Visual Studio compiler, but you do not need a full Visual
> Studio installation, installing the much smaller "Build Tools" package is sufficient:
>
> * Install the `Microsoft Build Tools for Visual Studio <https://visualstudio.microsoft.com/visual-cpp-build-tools/>`_.
> * In Build tools, install C++ build tools and ensure the latest versions of MSVCv... build tools and Windows 10 SDK are checked.
> * Make sure that your ``setuptools`` package has at least version 34.4.0 (use ``conda update setuptools`` when
> using Anaconda, or ``python -m pip install --upgrade setuptools`` when using pip).
>
> For :ref:`cpp_standalone`, you can either use the compiler installed above or any other version of Visual Studio.
> /<<PKGBUILDDIR>>/docs_sphinx/introduction/install.rst:208: ERROR: Unknown directive type "tabs".
>
> .. tabs::
> .. group-tab:: conda package
>
> ::
>
> conda install matplotlib pytest ipython notebook
>
> .. group-tab:: PyPI package (``pip``)
>
> ::
>
> python -m pip install matplotlib pytest ipython notebook
> /<<PKGBUILDDIR>>/docs_sphinx/introduction/install.rst:224: ERROR: Unknown directive type "tabs".
>
> .. tabs::
> .. group-tab:: conda package
>
> As of now, ``brian2tools`` is not yet included in the ``conda-forge``
> channel, you therefore have to install it from our own ``brian-team`` channel::
>
> conda install -c brian-team brian2tools
>
> .. group-tab:: PyPI package (``pip``)
>
> ::
>
> python -m pip install brian2tools
> /<<PKGBUILDDIR>>/docs_sphinx/introduction/release_notes.rst:2: WARNING: Duplicate explicit target name: "blog post".
> /<<PKGBUILDDIR>>/docs_sphinx/introduction/release_notes.rst:2: WARNING: Duplicate explicit target name: "@felix11h".
> /<<PKGBUILDDIR>>/docs_sphinx/introduction/release_notes.rst:2: WARNING: Duplicate explicit target name: "appveyor".
> /usr/lib/python3/dist-packages/pyparsing/core.py:docstring of brian2.stateupdaters.explicit.ExplicitStateUpdater.DESCRIPTION:1: WARNING: duplicate object description of brian2.stateupdaters.explicit.ExplicitStateUpdater.DESCRIPTION, other instance in reference/brian2.stateupdaters.explicit.ExplicitStateUpdater, use :no-index: for one of them
> /usr/lib/python3/dist-packages/pyparsing/core.py:docstring of brian2.stateupdaters.explicit.ExplicitStateUpdater.EXPRESSION:1: WARNING: duplicate object description of brian2.stateupdaters.explicit.ExplicitStateUpdater.EXPRESSION, other instance in reference/brian2.stateupdaters.explicit.ExplicitStateUpdater, use :no-index: for one of them
> /usr/lib/python3/dist-packages/pyparsing/core.py:docstring of brian2.stateupdaters.explicit.ExplicitStateUpdater.OUTPUT:1: WARNING: duplicate object description of brian2.stateupdaters.explicit.ExplicitStateUpdater.OUTPUT, other instance in reference/brian2.stateupdaters.explicit.ExplicitStateUpdater, use :no-index: for one of them
> /usr/lib/python3/dist-packages/pyparsing/core.py:docstring of brian2.stateupdaters.explicit.ExplicitStateUpdater.STATEMENT:1: WARNING: duplicate object description of brian2.stateupdaters.explicit.ExplicitStateUpdater.STATEMENT, other instance in reference/brian2.stateupdaters.explicit.ExplicitStateUpdater, use :no-index: for one of them
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> writing output... [ 87%] reference/brian2.units.fundamentalunits.wrap_function_change_dimensions
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> writing output... [ 87%] reference/brian2.units.unitsafefunctions.arange
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> removed 'docs/.doctrees/advanced/custom_events.doctree'
> removed 'docs/.doctrees/advanced/random.doctree'
> removed 'docs/.doctrees/advanced/how_brian_works.doctree'
> removed 'docs/.doctrees/advanced/namespaces.doctree'
> removed 'docs/.doctrees/advanced/index.doctree'
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> removed directory 'docs/.doctrees/advanced'
> removed directory 'docs/.doctrees'
> : # objects inventory is of no use for the package
> rm -vf docs/objects.inv
> removed 'docs/objects.inv'
> # : # fresh PDF
> # { cd docs_sphinx/_latexbuild; make clean; make; }
> # Remove failing tests
> # The following test files will be ignored completely.
> # There are other single test in other testfiles which is patched out in ignore_failing_test.patch
> # MAKE SURE YOU EXCLUDE test_devices IN ANY CASE (see above!)
> for ti in test_cpp_standalone \
> test_devices \
> test_functions \
> test_monitor \
> test_network \
> test_neurongroup \
> test_numpy_codegen \
> test_poissongroup \
> test_refractory \
> test_spatialneuron \
> test_spikegenerator \
> test_stateupdaters \
> test_synapses \
> test_thresholder \
> test_timedarray \
> ; do \
> find .pybuild -name ${ti}.py -delete ; \
> find debian/tmp -name ${ti}.py -delete ; \
> done
> # FIXME: May be the deleted tests should be provided in final binary package!
> # Effectively running the test suite brian2.test() per upstream doc.
> set -e \
> ; cd /<<PKGBUILDDIR>>/build \
> ; echo "I: Running Brian unittests using python3.12" \
> ; export PYTHONPATH="$( echo /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.12/*-packages )" \
> ; python3.12 -c 'import brian2;exit(not brian2.test())' \
> ; rm -rvf "${PYTHONPATH}/brian2/tests/.pytest_cache/"
> I: Running Brian unittests using python3.12
> Running tests in /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.12/dist-packages/brian2 for targets numpy, cython (excluding long tests)
> Running Brian version 2.5.4 from '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.12/dist-packages/brian2'
> Testing codegen-independent code
> Resetting to default preferences
>
> Running doctests
> .......................................... [100%]
> =============================== warnings summary ===============================
> ../debian/tmp/usr/lib/python3.12/dist-packages/brian2/conftest.py:16
> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.12/dist-packages/brian2/conftest.py:16: PytestRemovedIn9Warning: The (path: py.path.local) argument is deprecated, please use (collection_path: pathlib.Path)
> see https://docs.pytest.org/en/latest/deprecations.html#py-path-local-arguments-for-hooks-replaced-with-pathlib-path
> def pytest_ignore_collect(path, config):
>
> core/variables.py: 1 warning
> input/timedarray.py: 3 warnings
> monitors/spikemonitor.py: 1 warning
> monitors/statemonitor.py: 2 warnings
> stateupdaters/exponential_euler.py: 3 warnings
> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.12/dist-packages/brian2/parsing/rendering.py:281: DeprecationWarning: Attribute n is deprecated and will be removed in Python 3.14; use value instead
> if isinstance(node.n, numbers.Integral):
>
> core/variables.py::brian2.core.variables.linked_var
> input/timedarray.py::brian2.input.timedarray.TimedArray
> input/timedarray.py::brian2.input.timedarray.TimedArray
> input/timedarray.py::brian2.input.timedarray.TimedArray
> monitors/spikemonitor.py::brian2.monitors.spikemonitor.EventMonitor.all_values
> monitors/statemonitor.py::brian2.monitors.statemonitor.StateMonitor.record_single_timestep
> monitors/statemonitor.py::brian2.monitors.statemonitor.StateMonitor.record_single_timestep
> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.12/dist-packages/brian2/parsing/rendering.py:282: DeprecationWarning: Attribute n is deprecated and will be removed in Python 3.14; use value instead
> return sympy.Integer(node.n)
>
> input/timedarray.py::brian2.input.timedarray.TimedArray
> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.12/dist-packages/brian2/parsing/expressions.py:234: DeprecationWarning: ast.NameConstant is deprecated and will be removed in Python 3.14; use ast.Constant instead
> if expr.__class__ is getattr(ast, "NameConstant", None):
>
> input/timedarray.py::brian2.input.timedarray.TimedArray
> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.12/dist-packages/brian2/parsing/expressions.py:256: DeprecationWarning: ast.Num is deprecated and will be removed in Python 3.14; use ast.Constant instead
> elif expr.__class__ is ast.Num or expr.__class__ is getattr(
>
> input/timedarray.py: 8 warnings
> monitors/spikemonitor.py: 30 warnings
> monitors/statemonitor.py: 33 warnings
> synapses/synapses.py: 311 warnings
> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.12/dist-packages/brian2/parsing/rendering.py:19: DeprecationWarning: Attribute n is deprecated and will be removed in Python 3.14; use value instead
> value = getattr(node, "n", getattr(node, "value", None))
>
> stateupdaters/exponential_euler.py::brian2.stateupdaters.exponential_euler.get_conditionally_linear_system
> stateupdaters/exponential_euler.py::brian2.stateupdaters.exponential_euler.get_conditionally_linear_system
> stateupdaters/exponential_euler.py::brian2.stateupdaters.exponential_euler.get_conditionally_linear_system
> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.12/dist-packages/brian2/parsing/rendering.py:284: DeprecationWarning: Attribute n is deprecated and will be removed in Python 3.14; use value instead
> return sympy.Float(node.n)
>
> -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
> 42 passed, 405 warnings in 11.25s
> Running tests that do not use code generation
> ....................F.................s................................. [ 35%]
> ........................................................................ [ 70%]
> ............................................................. [100%]
> =================================== FAILURES ===================================
> _____________________ test_automatic_augmented_assignments _____________________
>
> @pytest.mark.codegen_independent
> def test_automatic_augmented_assignments():
> # We test that statements that could be rewritten as augmented assignments
> # are correctly rewritten (using sympy to test for symbolic equality)
> variables = {
> "x": ArrayVariable("x", owner=None, size=10, device=device),
> "y": ArrayVariable("y", owner=None, size=10, device=device),
> "z": ArrayVariable("y", owner=None, size=10, device=device),
> "b": ArrayVariable("b", owner=None, size=10, dtype=bool, device=device),
> "clip": DEFAULT_FUNCTIONS["clip"],
> "inf": DEFAULT_CONSTANTS["inf"],
> }
> statements = [
> # examples that should be rewritten
> # Note that using our approach, we will never get -= or /= but always
> # the equivalent += or *= statements
> ("x = x + 1.0", "x += 1.0"),
> ("x = 2.0 * x", "x *= 2.0"),
> ("x = x - 3.0", "x += -3.0"),
> ("x = x/2.0", "x *= 0.5"),
> ("x = y + (x + 1.0)", "x += y + 1.0"),
> ("x = x + x", "x *= 2.0"),
> ("x = x + y + z", "x += y + z"),
> ("x = x + y + z", "x += y + z"),
> # examples that should not be rewritten
> ("x = 1.0/x", "x = 1.0/x"),
> ("x = 1.0", "x = 1.0"),
> ("x = 2.0*(x + 1.0)", "x = 2.0*(x + 1.0)"),
> ("x = clip(x + y, 0.0, inf)", "x = clip(x + y, 0.0, inf)"),
> ("b = b or False", "b = b or False"),
> ]
> for orig, rewritten in statements:
> scalar, vector = make_statements(orig, variables, np.float32)
> try: # we augment the assertion error with the original statement
> assert (
> len(scalar) == 0
> ), f"Did not expect any scalar statements but got {str(scalar)}"
> assert (
> len(vector) == 1
> ), f"Did expect a single statement but got {str(vector)}"
> statement = vector[0]
> expected_var, expected_op, expected_expr, _ = parse_statement(rewritten)
> assert (
> expected_var == statement.var
> ), f"expected write to variable {expected_var}, not to {statement.var}"
> assert (
> expected_op == statement.op
> ), f"expected operation {expected_op}, not {statement.op}"
> # Compare the two expressions using sympy to allow for different order etc.
> sympy_expected = str_to_sympy(expected_expr)
> sympy_actual = str_to_sympy(statement.expr)
> > assert sympy_expected == sympy_actual, (
> f"RHS expressions '{sympy_to_str(sympy_expected)}' and"
> f" '{sympy_to_str(sympy_actual)}' are not identical"
> )
> E AssertionError: RHS expressions '2.00000000000000' and '2' are not identical
> E assert 2.00000000000000 == 2
>
> ../debian/tmp/usr/lib/python3.12/dist-packages/brian2/tests/test_codegen.py:481: AssertionError
>
> During handling of the above exception, another exception occurred:
>
> @pytest.mark.codegen_independent
> def test_automatic_augmented_assignments():
> # We test that statements that could be rewritten as augmented assignments
> # are correctly rewritten (using sympy to test for symbolic equality)
> variables = {
> "x": ArrayVariable("x", owner=None, size=10, device=device),
> "y": ArrayVariable("y", owner=None, size=10, device=device),
> "z": ArrayVariable("y", owner=None, size=10, device=device),
> "b": ArrayVariable("b", owner=None, size=10, dtype=bool, device=device),
> "clip": DEFAULT_FUNCTIONS["clip"],
> "inf": DEFAULT_CONSTANTS["inf"],
> }
> statements = [
> # examples that should be rewritten
> # Note that using our approach, we will never get -= or /= but always
> # the equivalent += or *= statements
> ("x = x + 1.0", "x += 1.0"),
> ("x = 2.0 * x", "x *= 2.0"),
> ("x = x - 3.0", "x += -3.0"),
> ("x = x/2.0", "x *= 0.5"),
> ("x = y + (x + 1.0)", "x += y + 1.0"),
> ("x = x + x", "x *= 2.0"),
> ("x = x + y + z", "x += y + z"),
> ("x = x + y + z", "x += y + z"),
> # examples that should not be rewritten
> ("x = 1.0/x", "x = 1.0/x"),
> ("x = 1.0", "x = 1.0"),
> ("x = 2.0*(x + 1.0)", "x = 2.0*(x + 1.0)"),
> ("x = clip(x + y, 0.0, inf)", "x = clip(x + y, 0.0, inf)"),
> ("b = b or False", "b = b or False"),
> ]
> for orig, rewritten in statements:
> scalar, vector = make_statements(orig, variables, np.float32)
> try: # we augment the assertion error with the original statement
> assert (
> len(scalar) == 0
> ), f"Did not expect any scalar statements but got {str(scalar)}"
> assert (
> len(vector) == 1
> ), f"Did expect a single statement but got {str(vector)}"
> statement = vector[0]
> expected_var, expected_op, expected_expr, _ = parse_statement(rewritten)
> assert (
> expected_var == statement.var
> ), f"expected write to variable {expected_var}, not to {statement.var}"
> assert (
> expected_op == statement.op
> ), f"expected operation {expected_op}, not {statement.op}"
> # Compare the two expressions using sympy to allow for different order etc.
> sympy_expected = str_to_sympy(expected_expr)
> sympy_actual = str_to_sympy(statement.expr)
> assert sympy_expected == sympy_actual, (
> f"RHS expressions '{sympy_to_str(sympy_expected)}' and"
> f" '{sympy_to_str(sympy_actual)}' are not identical"
> )
> except AssertionError as ex:
> > raise AssertionError(
> f"Transformation for statement '{orig}' gave an unexpected result: {ex}"
> )
> E AssertionError: Transformation for statement 'x = x + x' gave an unexpected result: RHS expressions '2.00000000000000' and '2' are not identical
> E assert 2.00000000000000 == 2
>
> ../debian/tmp/usr/lib/python3.12/dist-packages/brian2/tests/test_codegen.py:486: AssertionError
> =============================== warnings summary ===============================
> ../debian/tmp/usr/lib/python3.12/dist-packages/brian2/conftest.py:16
> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.12/dist-packages/brian2/conftest.py:16: PytestRemovedIn9Warning: The (path: py.path.local) argument is deprecated, please use (collection_path: pathlib.Path)
> see https://docs.pytest.org/en/latest/deprecations.html#py-path-local-arguments-for-hooks-replaced-with-pathlib-path
> def pytest_ignore_collect(path, config):
>
> ../debian/tmp/usr/lib/python3.12/dist-packages/brian2/parsing/rendering.py:281: 31 warnings
> test_codegen.py: 13 warnings
> test_codestrings.py: 6 warnings
> test_equations.py: 51 warnings
> test_parsing.py: 33 warnings
> test_subgroup.py: 1 warning
> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.12/dist-packages/brian2/parsing/rendering.py:281: DeprecationWarning: Attribute n is deprecated and will be removed in Python 3.14; use value instead
> if isinstance(node.n, numbers.Integral):
>
> ../debian/tmp/usr/lib/python3.12/dist-packages/brian2/parsing/rendering.py:284: 26 warnings
> test_codegen.py: 11 warnings
> test_codestrings.py: 4 warnings
> test_equations.py: 29 warnings
> test_parsing.py: 17 warnings
> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.12/dist-packages/brian2/parsing/rendering.py:284: DeprecationWarning: Attribute n is deprecated and will be removed in Python 3.14; use value instead
> return sympy.Float(node.n)
>
> ../debian/tmp/usr/lib/python3.12/dist-packages/brian2/parsing/rendering.py:282: 5 warnings
> test_codegen.py: 2 warnings
> test_codestrings.py: 2 warnings
> test_equations.py: 22 warnings
> test_parsing.py: 16 warnings
> test_subgroup.py: 1 warning
> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.12/dist-packages/brian2/parsing/rendering.py:282: DeprecationWarning: Attribute n is deprecated and will be removed in Python 3.14; use value instead
> return sympy.Integer(node.n)
>
> test_codegen.py: 467 warnings
> test_parsing.py: 166 warnings
> test_subgroup.py: 40 warnings
> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.12/dist-packages/brian2/parsing/rendering.py:19: DeprecationWarning: Attribute n is deprecated and will be removed in Python 3.14; use value instead
> value = getattr(node, "n", getattr(node, "value", None))
>
> test_codegen.py::test_apply_loop_invariant_optimisation_boolean
> test_codegen.py::test_apply_loop_invariant_optimisation_simplification
> test_codegen.py::test_apply_loop_invariant_optimisation_simplification
> test_codegen.py::test_apply_loop_invariant_optimisation_simplification
> test_codegen.py::test_apply_loop_invariant_optimisation_simplification
> test_codegen.py::test_apply_loop_invariant_optimisation_simplification
> test_codegen.py::test_apply_loop_invariant_optimisation_simplification
> test_codegen.py::test_apply_loop_invariant_optimisation_simplification
> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.12/dist-packages/brian2/codegen/optimisation.py:630: DeprecationWarning: ast.Num is deprecated and will be removed in Python 3.14; use ast.Constant instead
> node = ast.BinOp(ast.Num(op_null_with_dtype), op_primary(), node)
>
> test_parsing.py: 31 warnings
> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.12/dist-packages/brian2/parsing/expressions.py:154: DeprecationWarning: Attribute n is deprecated and will be removed in Python 3.14; use value instead
> if expr.n is True or expr.n is False:
>
> test_parsing.py: 14 warnings
> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.12/dist-packages/brian2/parsing/expressions.py:157: DeprecationWarning: Attribute n is deprecated and will be removed in Python 3.14; use value instead
> return expr.n
>
> test_parsing.py::test_value_from_expression
> test_parsing.py::test_value_from_expression
> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.12/dist-packages/brian2/parsing/expressions.py:155: DeprecationWarning: Attribute n is deprecated and will be removed in Python 3.14; use value instead
> return 1.0 if expr.n else 0.0
>
> -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
> =========================== short test summary info ============================
> FAILED ../debian/tmp/usr/lib/python3.12/dist-packages/brian2/tests/test_codegen.py::test_automatic_augmented_assignments
> 1 failed, 203 passed, 1 skipped, 58 deselected, 999 warnings in 77.72s (0:01:17)
> Running tests for target numpy:
> .....s.............................. [100%]
> =============================== warnings summary ===============================
> ../debian/tmp/usr/lib/python3.12/dist-packages/brian2/conftest.py:16
> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.12/dist-packages/brian2/conftest.py:16: PytestRemovedIn9Warning: The (path: py.path.local) argument is deprecated, please use (collection_path: pathlib.Path)
> see https://docs.pytest.org/en/latest/deprecations.html#py-path-local-arguments-for-hooks-replaced-with-pathlib-path
> def pytest_ignore_collect(path, config):
>
> test_base.py: 2 warnings
> test_poissoninput.py: 2 warnings
> test_subgroup.py: 10 warnings
> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.12/dist-packages/brian2/parsing/rendering.py:281: DeprecationWarning: Attribute n is deprecated and will be removed in Python 3.14; use value instead
> if isinstance(node.n, numbers.Integral):
>
> test_base.py: 2 warnings
> test_poissoninput.py: 2 warnings
> test_subgroup.py: 9 warnings
> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.12/dist-packages/brian2/parsing/rendering.py:282: DeprecationWarning: Attribute n is deprecated and will be removed in Python 3.14; use value instead
> return sympy.Integer(node.n)
>
> test_complex_examples.py: 198 warnings
> test_poissoninput.py: 90 warnings
> test_subgroup.py: 1766 warnings
> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.12/dist-packages/brian2/parsing/rendering.py:19: DeprecationWarning: Attribute n is deprecated and will be removed in Python 3.14; use value instead
> value = getattr(node, "n", getattr(node, "value", None))
>
> test_subgroup.py::test_synapse_creation_generator_random
> test_subgroup.py::test_synapse_creation_generator_random
> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.12/dist-packages/brian2/codegen/optimisation.py:630: DeprecationWarning: ast.Num is deprecated and will be removed in Python 3.14; use ast.Constant instead
> node = ast.BinOp(ast.Num(op_null_with_dtype), op_primary(), node)
>
> test_subgroup.py::test_synaptic_propagation
> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.12/dist-packages/brian2/parsing/rendering.py:284: DeprecationWarning: Attribute n is deprecated and will be removed in Python 3.14; use value instead
> return sympy.Float(node.n)
>
> -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
> 35 passed, 1 skipped, 227 deselected, 2085 warnings in 24.71s
> Running tests for target cython:
> .....s.............................. [100%]
> =============================== warnings summary ===============================
> ../debian/tmp/usr/lib/python3.12/dist-packages/brian2/conftest.py:16
> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.12/dist-packages/brian2/conftest.py:16: PytestRemovedIn9Warning: The (path: py.path.local) argument is deprecated, please use (collection_path: pathlib.Path)
> see https://docs.pytest.org/en/latest/deprecations.html#py-path-local-arguments-for-hooks-replaced-with-pathlib-path
> def pytest_ignore_collect(path, config):
>
> test_complex_examples.py: 198 warnings
> test_poissoninput.py: 90 warnings
> test_subgroup.py: 1766 warnings
> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.12/dist-packages/brian2/parsing/rendering.py:19: DeprecationWarning: Attribute n is deprecated and will be removed in Python 3.14; use value instead
> value = getattr(node, "n", getattr(node, "value", None))
>
> test_subgroup.py::test_synapse_creation_generator_random
> test_subgroup.py::test_synapse_creation_generator_random
> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.12/dist-packages/brian2/codegen/optimisation.py:630: DeprecationWarning: ast.Num is deprecated and will be removed in Python 3.14; use ast.Constant instead
> node = ast.BinOp(ast.Num(op_null_with_dtype), op_primary(), node)
>
> -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
> 35 passed, 1 skipped, 227 deselected, 2057 warnings in 308.82s (0:05:08)
> ERROR: 1/4 test suite(s) did not complete successfully (see above).
> make[1]: *** [debian/rules:59: override_dh_auto_install] Error 1
The full build log is available from:
http://qa-logs.debian.net/2024/08/09/brian_2.5.4-4_unstable.log
All bugs filed during this archive rebuild are listed at:
https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20240809;users=lucas@debian.org
or:
https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20240809&fusertaguser=lucas@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.
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