[Debian-med-packaging] Bug#1078612: biojava6-live: will FTBFS during trixie support period

Santiago Vila sanvila at debian.org
Tue Aug 13 19:06:06 BST 2024


Package: src:biojava6-live
Version: 6.1.0+dfsg-4
User: debian-qa at lists.debian.org
Usertags: ftbfs-during-trixie-support-period
Tags: ftbfs

Dear maintainer:

During a rebuild of all packages in unstable in the year 2028, your package failed to build:

--------------------------------------------------------------------------------
[...]
  debian/rules binary
dpkg: warning: --compare-versions used with obsolete relation operator '>'
dh binary  --with javahelper
    dh_update_autotools_config
    dh_autoreconf
    debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dpkg: warning: --compare-versions used with obsolete relation operator '>'
# Creating the directories for forester and jcolorbrewer, with symlinks.
mkdir -p biojava-forester/src/main/java/
cp -a forester/org biojava-forester/src/main/java/
mkdir -p biojava-jcolorbrewer/src/main/java/
cp -a jcolorbrewer/org biojava-jcolorbrewer/src/main/java/

[... snipped ...]

SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.099 s - in org.biojava.nbio.alignment.LocalAlignmentTest
[INFO] Running org.biojava.nbio.alignment.SimpleSubstitutionMatrixTest
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.089 s - in org.biojava.nbio.alignment.SimpleSubstitutionMatrixTest
[INFO] Running org.biojava.nbio.alignment.SmithWatermanTest
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] Tests run: 15, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.129 s - in org.biojava.nbio.alignment.SmithWatermanTest
[INFO] Running org.biojava.nbio.alignment.TestSubOptimalMSA
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[WARNING] Tests run: 2, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.135 s - in org.biojava.nbio.alignment.TestSubOptimalMSA
[INFO] Running org.biojava.nbio.alignment.FractionalIdentityScorerTest
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.107 s - in org.biojava.nbio.alignment.FractionalIdentityScorerTest
[INFO] Running org.biojava.nbio.alignment.aaindex.TestAAINDEXLoading
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.169 s - in org.biojava.nbio.alignment.aaindex.TestAAINDEXLoading
[INFO] Running org.biojava.nbio.phylo.TestForesterWrapper
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.088 s - in org.biojava.nbio.phylo.TestForesterWrapper
[INFO] Running org.biojava.nbio.phylo.TestDistanceTreeEvaluator
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.076 s - in org.biojava.nbio.phylo.TestDistanceTreeEvaluator
[INFO]
[INFO] Results:
[INFO]
[WARNING] Tests run: 127, Failures: 0, Errors: 0, Skipped: 1
[INFO]
[INFO]
[INFO] -------------------< org.biojava:biojava-structure >--------------------
[INFO] Building biojava-structure 6.1.0                                  [5/15]
[INFO]   from biojava-structure/pom.xml
[INFO] --------------------------------[ jar ]---------------------------------
[WARNING] The artifact java3d:vecmath:jar:debian has been relocated to javax.vecmath:vecmath:jar:debian
[INFO]
[INFO] --- maven-resources-plugin:3.3.1:resources (default-resources) @ biojava-structure ---
[INFO] Copying 3 resources
[INFO] Copying 61 resources
[INFO] The encoding used to copy filtered properties files have not been set. This means that the same encoding will be used to copy filtered properties files as when copying other filtered resources. This might not be what you want! Run your build with --debug to see which files might be affected. Read more at https://maven.apache.org/plugins/maven-resources-plugin/examples/filtering-properties-files.html
[INFO]
[INFO] --- maven-compiler-plugin:3.10.1:compile (default-compile) @ biojava-structure ---
[INFO] Nothing to compile - all classes are up to date
[INFO]
[INFO] --- maven-resources-plugin:3.3.1:testResources (default-testResources) @ biojava-structure ---
[INFO] Copying 55 resources
[INFO]
[INFO] --- maven-compiler-plugin:3.10.1:testCompile (default-testCompile) @ biojava-structure ---
[INFO] Nothing to compile - all classes are up to date
[INFO]
[INFO] --- maven-surefire-plugin:2.22.3:test (default-test) @ biojava-structure ---
[INFO]
[INFO] -------------------------------------------------------
[INFO]  T E S T S
[INFO] -------------------------------------------------------
[INFO] Running org.biojava.nbio.structure.TestEntityResIndexMapping
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[WARNING] Tests run: 4, Failures: 0, Errors: 0, Skipped: 3, Time elapsed: 3.922 s - in org.biojava.nbio.structure.TestEntityResIndexMapping
[INFO] Running org.biojava.nbio.structure.TestAtomIterator
[WARNING] Tests run: 1, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.004 s - in org.biojava.nbio.structure.TestAtomIterator
[INFO] Running org.biojava.nbio.structure.cluster.TestSubunitExtractor
[WARNING] Tests run: 3, Failures: 0, Errors: 0, Skipped: 3, Time elapsed: 0.005 s - in org.biojava.nbio.structure.cluster.TestSubunitExtractor
[INFO] Running org.biojava.nbio.structure.cluster.TestSubunitCluster
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[WARNING] Tests run: 5, Failures: 0, Errors: 0, Skipped: 2, Time elapsed: 0.122 s - in org.biojava.nbio.structure.cluster.TestSubunitCluster
[INFO] Running org.biojava.nbio.structure.TestDNAAlignment
[WARNING] Tests run: 1, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.005 s - in org.biojava.nbio.structure.TestDNAAlignment
[INFO] Running org.biojava.nbio.structure.geometry.TestUnitQuaternions
[WARNING] Tests run: 4, Failures: 0, Errors: 0, Skipped: 3, Time elapsed: 0.015 s - in org.biojava.nbio.structure.geometry.TestUnitQuaternions
[INFO] Running org.biojava.nbio.structure.geometry.TestSuperPosition
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.851 s - in org.biojava.nbio.structure.geometry.TestSuperPosition
[INFO] Running org.biojava.nbio.structure.geometry.TestSuperPositionQCP
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[WARNING] Tests run: 3, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.026 s - in org.biojava.nbio.structure.geometry.TestSuperPositionQCP
[INFO] Running org.biojava.nbio.structure.Test2JA5
[WARNING] Tests run: 2, Failures: 0, Errors: 0, Skipped: 2, Time elapsed: 0.007 s - in org.biojava.nbio.structure.Test2JA5
[INFO] Running org.biojava.nbio.structure.TestCalc
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.08 s - in org.biojava.nbio.structure.TestCalc
[INFO] Running org.biojava.nbio.structure.Test4hhb
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 5.477 s - in org.biojava.nbio.structure.Test4hhb
[INFO] Running org.biojava.nbio.structure.xtal.TestCrystalInfo
[WARNING] Tests run: 4, Failures: 0, Errors: 0, Skipped: 4, Time elapsed: 0.007 s - in org.biojava.nbio.structure.xtal.TestCrystalInfo
[INFO] Running org.biojava.nbio.structure.xtal.TestSpaceGroup
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.516 s - in org.biojava.nbio.structure.xtal.TestSpaceGroup
[INFO] Running org.biojava.nbio.structure.xtal.TestInterfaceClustering
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[WARNING] Tests run: 3, Failures: 0, Errors: 0, Skipped: 2, Time elapsed: 8.076 s - in org.biojava.nbio.structure.xtal.TestInterfaceClustering
[INFO] Running org.biojava.nbio.structure.xtal.TestCrystalCell
[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.016 s - in org.biojava.nbio.structure.xtal.TestCrystalCell
[INFO] Running org.biojava.nbio.structure.io.TestQuaternaryStructureProviders
[WARNING] Tests run: 7, Failures: 0, Errors: 0, Skipped: 7, Time elapsed: 0.006 s - in org.biojava.nbio.structure.io.TestQuaternaryStructureProviders
[INFO] Running org.biojava.nbio.structure.io.mmcif.TestParseInternalChainId
[WARNING] Tests run: 1, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.005 s - in org.biojava.nbio.structure.io.mmcif.TestParseInternalChainId
[INFO] Running org.biojava.nbio.structure.io.mmcif.TestEntityNameAndType
[WARNING] Tests run: 1, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.005 s - in org.biojava.nbio.structure.io.mmcif.TestEntityNameAndType
[INFO] Running org.biojava.nbio.structure.io.mmcif.TestChemCompProvider
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
Using PDB_DIR=/tmp as temporary file directory
[WARNING] Tests run: 3, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 1.677 s - in org.biojava.nbio.structure.io.mmcif.TestChemCompProvider
[INFO] Running org.biojava.nbio.structure.io.mmcif.TestParseMmcifHeader
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[WARNING] Tests run: 3, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 4.955 s - in org.biojava.nbio.structure.io.mmcif.TestParseMmcifHeader
[INFO] Running org.biojava.nbio.structure.io.mmcif.TestMmcifV5Changes
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 4.91 s - in org.biojava.nbio.structure.io.mmcif.TestMmcifV5Changes
[INFO] Running org.biojava.nbio.structure.io.TestDifficultMmCIFFiles
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[WARNING] Tests run: 7, Failures: 0, Errors: 0, Skipped: 5, Time elapsed: 4.609 s - in org.biojava.nbio.structure.io.TestDifficultMmCIFFiles
[INFO] Running org.biojava.nbio.structure.io.TestMMCIFWriting
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[WARNING] Tests run: 4, Failures: 0, Errors: 0, Skipped: 3, Time elapsed: 0.101 s - in org.biojava.nbio.structure.io.TestMMCIFWriting
[INFO] Running org.biojava.nbio.structure.io.StructureSequenceMatcherTest
[WARNING] Tests run: 4, Failures: 0, Errors: 0, Skipped: 4, Time elapsed: 0.005 s - in org.biojava.nbio.structure.io.StructureSequenceMatcherTest
[INFO] Running org.biojava.nbio.structure.io.TestSiftsParsing
[WARNING] Tests run: 4, Failures: 0, Errors: 0, Skipped: 4, Time elapsed: 0.005 s - in org.biojava.nbio.structure.io.TestSiftsParsing
[INFO] Running org.biojava.nbio.structure.io.TestNonDepositedFiles
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[WARNING] Tests run: 14, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 8.583 s - in org.biojava.nbio.structure.io.TestNonDepositedFiles
[INFO] Running org.biojava.nbio.structure.io.TestWriteLargeCoordinatePDB
[WARNING] Tests run: 1, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.006 s - in org.biojava.nbio.structure.io.TestWriteLargeCoordinatePDB
[INFO] Running org.biojava.nbio.structure.io.TestURLBasedFileParsing
[WARNING] Tests run: 1, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.006 s - in org.biojava.nbio.structure.io.TestURLBasedFileParsing
[INFO] Running org.biojava.nbio.structure.io.FastaAFPChainConverterTest
[WARNING] Tests run: 5, Failures: 0, Errors: 0, Skipped: 5, Time elapsed: 0.007 s - in org.biojava.nbio.structure.io.FastaAFPChainConverterTest
[INFO] Running org.biojava.nbio.structure.io.TestParseOnAsymId
[WARNING] Tests run: 1, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.005 s - in org.biojava.nbio.structure.io.TestParseOnAsymId
[INFO] Running org.biojava.nbio.structure.io.TestParseMmCIFFeatures
[WARNING] Tests run: 4, Failures: 0, Errors: 0, Skipped: 4, Time elapsed: 0.006 s - in org.biojava.nbio.structure.io.TestParseMmCIFFeatures
[INFO] Running org.biojava.nbio.structure.io.mmtf.TestMmtfUtils
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[WARNING] Tests run: 16, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.085 s - in org.biojava.nbio.structure.io.mmtf.TestMmtfUtils
[INFO] Running org.biojava.nbio.structure.io.mmtf.TestMmtfStructureReader
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[WARNING] Tests run: 3, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 5.743 s - in org.biojava.nbio.structure.io.mmtf.TestMmtfStructureReader
[INFO] Running org.biojava.nbio.structure.io.mmtf.TestMmtfPerformance
[WARNING] Tests run: 1, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.006 s - in org.biojava.nbio.structure.io.mmtf.TestMmtfPerformance
[INFO] Running org.biojava.nbio.structure.io.mmtf.TestMmtfRoundTrip
[WARNING] Tests run: 2, Failures: 0, Errors: 0, Skipped: 2, Time elapsed: 0.007 s - in org.biojava.nbio.structure.io.mmtf.TestMmtfRoundTrip
[INFO] Running org.biojava.nbio.structure.io.mmtf.TestBondFinding
[WARNING] Tests run: 1, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.006 s - in org.biojava.nbio.structure.io.mmtf.TestBondFinding
[INFO] Running org.biojava.nbio.structure.io.mmtf.TestMmtfStructureWriter
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.51 s - in org.biojava.nbio.structure.io.mmtf.TestMmtfStructureWriter
[INFO] Running org.biojava.nbio.structure.io.TestMMcifOrganismParsing
[WARNING] Tests run: 3, Failures: 0, Errors: 0, Skipped: 3, Time elapsed: 0.005 s - in org.biojava.nbio.structure.io.TestMMcifOrganismParsing
[INFO] Running org.biojava.nbio.structure.io.TestTitleParsing
[WARNING] Tests run: 1, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.004 s - in org.biojava.nbio.structure.io.TestTitleParsing
[INFO] Running org.biojava.nbio.structure.io.TestHeaderOnly
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[WARNING] Tests run: 3, Failures: 0, Errors: 0, Skipped: 2, Time elapsed: 4.629 s - in org.biojava.nbio.structure.io.TestHeaderOnly
[INFO] Running org.biojava.nbio.structure.io.TestHardBioUnits
[WARNING] Tests run: 2, Failures: 0, Errors: 0, Skipped: 2, Time elapsed: 0.006 s - in org.biojava.nbio.structure.io.TestHardBioUnits
[INFO] Running org.biojava.nbio.structure.io.cif.CifFileConsumerImplTest
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 6.787 s - in org.biojava.nbio.structure.io.cif.CifFileConsumerImplTest
[INFO] Running org.biojava.nbio.structure.io.sifts.SiftsChainToUniprotMappingTest
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.042 s - in org.biojava.nbio.structure.io.sifts.SiftsChainToUniprotMappingTest
[INFO] Running org.biojava.nbio.structure.io.TestParseMmCIFLigands
[WARNING] Tests run: 2, Failures: 0, Errors: 0, Skipped: 2, Time elapsed: 0.005 s - in org.biojava.nbio.structure.io.TestParseMmCIFLigands
[INFO] Running org.biojava.nbio.structure.io.TestShortLines
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.86 s - in org.biojava.nbio.structure.io.TestShortLines
[INFO] Running org.biojava.nbio.structure.io.TestDBRefParsing
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.065 s - in org.biojava.nbio.structure.io.TestDBRefParsing
[INFO] Running org.biojava.nbio.structure.TestStructureImpl
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.071 s - in org.biojava.nbio.structure.TestStructureImpl
[INFO] Running org.biojava.nbio.structure.ResidueRangeTest
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[WARNING] Tests run: 14, Failures: 0, Errors: 0, Skipped: 7, Time elapsed: 0.076 s - in org.biojava.nbio.structure.ResidueRangeTest
[INFO] Running org.biojava.nbio.structure.basepairs.TestBasePairParameters
[WARNING] Tests run: 1, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.006 s - in org.biojava.nbio.structure.basepairs.TestBasePairParameters
[INFO] Running org.biojava.nbio.structure.align.client.TestStructureName
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[WARNING] Tests run: 6, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.024 s - in org.biojava.nbio.structure.align.client.TestStructureName
[INFO] Running org.biojava.nbio.structure.align.multiple.TestAFPChainConversion
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.026 s - in org.biojava.nbio.structure.align.multiple.TestAFPChainConversion
[INFO] Running org.biojava.nbio.structure.align.multiple.util.TestMultipleAlignmentXMLParser
[WARNING] Tests run: 2, Failures: 0, Errors: 0, Skipped: 2, Time elapsed: 0.005 s - in org.biojava.nbio.structure.align.multiple.util.TestMultipleAlignmentXMLParser
[INFO] Running org.biojava.nbio.structure.align.multiple.util.TestMultipleAlignmentWriter
[WARNING] Tests run: 6, Failures: 0, Errors: 0, Skipped: 6, Time elapsed: 0.007 s - in org.biojava.nbio.structure.align.multiple.util.TestMultipleAlignmentWriter
[INFO] Running org.biojava.nbio.structure.align.multiple.util.TestMultipleAlignmentTools
[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.016 s - in org.biojava.nbio.structure.align.multiple.util.TestMultipleAlignmentTools
[INFO] Running org.biojava.nbio.structure.align.multiple.util.TestMultipleAlignmentScorer
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.051 s - in org.biojava.nbio.structure.align.multiple.util.TestMultipleAlignmentScorer
[INFO] Running org.biojava.nbio.structure.align.TestAlignmentConsistency
[WARNING] Tests run: 1, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.006 s - in org.biojava.nbio.structure.align.TestAlignmentConsistency
[INFO] Running org.biojava.nbio.structure.align.util.AtomCacheTest
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[WARNING] Tests run: 10, Failures: 0, Errors: 0, Skipped: 8, Time elapsed: 0.061 s - in org.biojava.nbio.structure.align.util.AtomCacheTest
[INFO] Running org.biojava.nbio.structure.align.util.RotationAxisTest
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.02 s - in org.biojava.nbio.structure.align.util.RotationAxisTest
[INFO] Running org.biojava.nbio.structure.align.ce.TestSmallAlignment
[WARNING] Tests run: 1, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.005 s - in org.biojava.nbio.structure.align.ce.TestSmallAlignment
[INFO] Running org.biojava.nbio.structure.align.ce.CeCPMainTest
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[WARNING] Tests run: 5, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.035 s - in org.biojava.nbio.structure.align.ce.CeCPMainTest
[INFO] Running org.biojava.nbio.structure.contact.TestInterfaceFinder
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
Interface <A, B>
<CA R 0 3.0 3.0 3.0, CA R 0 7.0 3.0 3.0> - 4.0
Interface <A, C>
<CA R 0 3.0 3.0 3.0, CA R 0 5.0 8.0 4.0> - 5.477225575051661
Interface <B, C>
<CA R 0 7.0 3.0 3.0, CA R 0 5.0 8.0 4.0> - 5.477225575051661
[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.091 s - in org.biojava.nbio.structure.contact.TestInterfaceFinder
[INFO] Running org.biojava.nbio.structure.contact.TestContactCalc
[WARNING] Tests run: 6, Failures: 0, Errors: 0, Skipped: 6, Time elapsed: 0.005 s - in org.biojava.nbio.structure.contact.TestContactCalc
[INFO] Running org.biojava.nbio.structure.TestVeryLongFileName
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.056 s - in org.biojava.nbio.structure.TestVeryLongFileName
[INFO] Running org.biojava.nbio.structure.TestURLIdentifier
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[ERROR] Tests run: 2, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 6.471 s <<< FAILURE! - in org.biojava.nbio.structure.TestURLIdentifier
[ERROR] testURLParameters  Time elapsed: 5.665 s  <<< ERROR!
javax.net.ssl.SSLHandshakeException: PKIX path validation failed: java.security.cert.CertPathValidatorException: validity check failed
	at org.biojava.nbio.structure.TestURLIdentifier.testURLParameters(TestURLIdentifier.java:107)
Caused by: sun.security.validator.ValidatorException: PKIX path validation failed: java.security.cert.CertPathValidatorException: validity check failed
	at org.biojava.nbio.structure.TestURLIdentifier.testURLParameters(TestURLIdentifier.java:107)
Caused by: java.security.cert.CertPathValidatorException: validity check failed
	at org.biojava.nbio.structure.TestURLIdentifier.testURLParameters(TestURLIdentifier.java:107)
Caused by: java.security.cert.CertificateExpiredException: NotAfter: Thu Jan 30 23:59:59 UTC 2025
	at org.biojava.nbio.structure.TestURLIdentifier.testURLParameters(TestURLIdentifier.java:107)

[INFO] Running org.biojava.nbio.structure.TestNucleotides
[WARNING] Tests run: 3, Failures: 0, Errors: 0, Skipped: 3, Time elapsed: 0.009 s - in org.biojava.nbio.structure.TestNucleotides
[INFO] Running org.biojava.nbio.structure.PdbFileFormat30Test
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.053 s - in org.biojava.nbio.structure.PdbFileFormat30Test
[INFO] Running org.biojava.nbio.structure.SiteTest
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.025 s - in org.biojava.nbio.structure.SiteTest
[INFO] Running org.biojava.nbio.structure.TestEntityHeuristics
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 7.544 s - in org.biojava.nbio.structure.TestEntityHeuristics
[INFO] Running org.biojava.nbio.structure.TestParsingCalcium
[WARNING] Tests run: 2, Failures: 0, Errors: 0, Skipped: 2, Time elapsed: 0.005 s - in org.biojava.nbio.structure.TestParsingCalcium
[INFO] Running org.biojava.nbio.structure.TestExperimentalTechniques
[WARNING] Tests run: 4, Failures: 0, Errors: 0, Skipped: 4, Time elapsed: 0.005 s - in org.biojava.nbio.structure.TestExperimentalTechniques
[INFO] Running org.biojava.nbio.structure.SourceCompoundTest
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 7.141 s - in org.biojava.nbio.structure.SourceCompoundTest
[INFO] Running org.biojava.nbio.structure.ResidueNumberTest
[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.017 s - in org.biojava.nbio.structure.ResidueNumberTest
[INFO] Running org.biojava.nbio.structure.AtomPositionMapTest
[WARNING] Tests run: 5, Failures: 0, Errors: 0, Skipped: 5, Time elapsed: 0.008 s - in org.biojava.nbio.structure.AtomPositionMapTest
[INFO] Running org.biojava.nbio.structure.TestStructureSerialization
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 5.48 s - in org.biojava.nbio.structure.TestStructureSerialization
[INFO] Running org.biojava.nbio.structure.HetatomImplTest
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.061 s - in org.biojava.nbio.structure.HetatomImplTest
[INFO] Running org.biojava.nbio.structure.TestChargeAdder
[WARNING] Tests run: 2, Failures: 0, Errors: 0, Skipped: 2, Time elapsed: 0.008 s - in org.biojava.nbio.structure.TestChargeAdder
[INFO] Running org.biojava.nbio.structure.symmetry.utils.TestSymmetryTools
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.014 s - in org.biojava.nbio.structure.symmetry.utils.TestSymmetryTools
[INFO] Running org.biojava.nbio.structure.symmetry.internal.TestSingleRefiner
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.025 s - in org.biojava.nbio.structure.symmetry.internal.TestSingleRefiner
[INFO] Running org.biojava.nbio.structure.symmetry.internal.TestSequenceFunctionOrderDetector
[WARNING] Tests run: 1, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.005 s - in org.biojava.nbio.structure.symmetry.internal.TestSequenceFunctionOrderDetector
[INFO] Running org.biojava.nbio.structure.symmetry.internal.TestCeSymm
[WARNING] Tests run: 1, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.005 s - in org.biojava.nbio.structure.symmetry.internal.TestCeSymm
[INFO] Running org.biojava.nbio.structure.symmetry.internal.TestSymmetryAxes
[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.016 s - in org.biojava.nbio.structure.symmetry.internal.TestSymmetryAxes
[INFO] Running org.biojava.nbio.structure.ElementTest
[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.013 s - in org.biojava.nbio.structure.ElementTest
[INFO] Running org.biojava.nbio.structure.ChemCompTest
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[WARNING] Tests run: 4, Failures: 0, Errors: 0, Skipped: 3, Time elapsed: 0.641 s - in org.biojava.nbio.structure.ChemCompTest
[INFO] Running org.biojava.nbio.structure.TestLoadStructureFromURL
[WARNING] Tests run: 1, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.005 s - in org.biojava.nbio.structure.TestLoadStructureFromURL
[INFO] Running org.biojava.nbio.structure.TestKeywords
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 5.077 s - in org.biojava.nbio.structure.TestKeywords
[INFO] Running org.biojava.nbio.structure.chem.TestDownloadChemCompProvider
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[WARNING] Tests run: 5, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.616 s - in org.biojava.nbio.structure.chem.TestDownloadChemCompProvider
[INFO] Running org.biojava.nbio.structure.TestAtomCache
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[WARNING] Tests run: 7, Failures: 0, Errors: 0, Skipped: 4, Time elapsed: 1.281 s - in org.biojava.nbio.structure.TestAtomCache
[INFO] Running org.biojava.nbio.structure.TestBond
[WARNING] Tests run: 15, Failures: 0, Errors: 0, Skipped: 15, Time elapsed: 0.009 s - in org.biojava.nbio.structure.TestBond
[INFO] Running org.biojava.nbio.structure.secstruc.TestSecStrucCalc
[WARNING] Tests run: 2, Failures: 0, Errors: 0, Skipped: 2, Time elapsed: 0.006 s - in org.biojava.nbio.structure.secstruc.TestSecStrucCalc
[INFO] Running org.biojava.nbio.structure.secstruc.TestDSSPParser
[WARNING] Tests run: 1, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.006 s - in org.biojava.nbio.structure.secstruc.TestDSSPParser
[INFO] Running org.biojava.nbio.structure.TestCloning
[WARNING] Tests run: 7, Failures: 0, Errors: 0, Skipped: 7, Time elapsed: 0.006 s - in org.biojava.nbio.structure.TestCloning
[INFO] Running org.biojava.nbio.structure.asa.TestAsaCalc
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[WARNING] Tests run: 6, Failures: 0, Errors: 0, Skipped: 4, Time elapsed: 0.024 s - in org.biojava.nbio.structure.asa.TestAsaCalc
[INFO] Running org.biojava.nbio.structure.TestStructureCrossReferences
[WARNING] Tests run: 4, Failures: 0, Errors: 0, Skipped: 4, Time elapsed: 0.007 s - in org.biojava.nbio.structure.TestStructureCrossReferences
[INFO] Running org.biojava.nbio.structure.TestAltLocs
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[WARNING] Tests run: 15, Failures: 0, Errors: 0, Skipped: 11, Time elapsed: 1.844 s - in org.biojava.nbio.structure.TestAltLocs
[INFO] Running org.biojava.nbio.structure.TestBioAssemblyIdentifier
[WARNING] Tests run: 1, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.004 s - in org.biojava.nbio.structure.TestBioAssemblyIdentifier
[INFO] Running org.biojava.nbio.structure.redmine.Test1DARSeqAlign
[WARNING] Tests run: 1, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.004 s - in org.biojava.nbio.structure.redmine.Test1DARSeqAlign
[INFO] Running org.biojava.nbio.structure.PDBStatusTest
[WARNING] Tests run: 3, Failures: 0, Errors: 0, Skipped: 3, Time elapsed: 0.006 s - in org.biojava.nbio.structure.PDBStatusTest
[INFO] Running org.biojava.nbio.structure.TestPdbId
[1ABC, PDB_00011ABC, 2ABC, 1ABA, 1100]
[1100, 1ABA, 1ABC, 2ABC, PDB_00011ABC]
[1100, 1ABA, 1ABC, 2ABC, PDB_00011ABC]
[INFO] Tests run: 12, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.052 s - in org.biojava.nbio.structure.TestPdbId
[INFO]
[INFO] Results:
[INFO]
[ERROR] Errors:
[ERROR]   TestURLIdentifier.testURLParameters:107 » SSLHandshake PKIX path validation fa...
[INFO]
[ERROR] Tests run: 374, Failures: 0, Errors: 1, Skipped: 188
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary for biojava 6.1.0:
[INFO]
[INFO] biojava ............................................ SUCCESS [  0.005 s]
[INFO] biojava-core ....................................... SUCCESS [09:50 min]
[INFO] biojava-forester ................................... SUCCESS [  0.048 s]
[INFO] biojava-alignment .................................. SUCCESS [03:00 min]
[INFO] biojava-structure .................................. FAILURE [16:20 min]
[INFO] biojava-jcolorbrewer ............................... SKIPPED
[INFO] biojava-structure-gui .............................. SKIPPED
[INFO] biojava-genome ..................................... SKIPPED
[INFO] biojava-modfinder .................................. SKIPPED
[INFO] biojava-ws ......................................... SKIPPED
[INFO] biojava-protein-disorder ........................... SKIPPED
[INFO] biojava-aa-prop .................................... SKIPPED
[INFO] biojava-survival ................................... SKIPPED
[INFO] biojava-ontology ................................... SKIPPED
[INFO] biojava-protein-comparison-tool .................... SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time:  29:11 min
[INFO] Finished at: 2028-06-10T12:32:20Z
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.22.3:test (default-test) on project biojava-structure: There are test failures.
[ERROR]
[ERROR] Please refer to /<<PKGBUILDDIR>>/biojava-structure/target/surefire-reports for the individual test results.
[ERROR] Please refer to dump files (if any exist) [date].dump, [date]-jvmRun[N].dump and [date].dumpstream.
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR]   mvn <args> -rf :biojava-structure
dh_auto_test: error: /usr/lib/jvm/default-java/bin/java -noverify -cp /usr/share/maven/boot/plexus-classworlds-2.x.jar -Dmaven.home=/usr/share/maven -Dmaven.multiModuleProjectDirectory=/<<BUILDDIR>>/biojava6-live-6.1.0\+dfsg -Dclassworlds.conf=/etc/maven/m2-debian.conf -Dproperties.file.manual=/<<BUILDDIR>>/biojava6-live-6.1.0\+dfsg/debian/maven.properties org.codehaus.plexus.classworlds.launcher.Launcher -s/etc/maven/settings-debian.xml -Ddebian.dir=/<<BUILDDIR>>/biojava6-live-6.1.0\+dfsg/debian -Dmaven.repo.local=/<<BUILDDIR>>/biojava6-live-6.1.0\+dfsg/debian/maven-repo --batch-mode test returned exit code 1
make: *** [debian/rules:22: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------

The above is just how the build ends and not necessarily the most relevant part.
If required, the full build log is available here:

https://people.debian.org/~sanvila/build-logs/ftbfs-future/

About the archive rebuild: This is an effort to keep trixie free from FTBFS bugs
during its lifetime as a supported distribution, as explained here:

https://lists.debian.org/debian-devel/2024/05/msg00414.html

(While they are not yet, please note that the bugs will be RC for trixie)

The build was made using sbuild and a reduced chroot with only
build-essential packages.

If you could not reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.

If this is really a bug in one of the build-depends, please use
reassign and affects, so that this is still visible in the BTS web
page for this package.

Thanks.



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