[Debian-med-packaging] Bug#1063189: staden-io-lib: NMU diff for 64-bit time_t transition
Steve Langasek
vorlon at debian.org
Mon Feb 5 16:27:42 GMT 2024
Source: staden-io-lib
Version: 1.15.0-1
Severity: serious
Tags: patch pending sid trixie
Justification: library ABI skew on upgrade
User: debian-arm at lists.debian.org
Usertags: time-t
NOTICE: these changes must not be uploaded to unstable yet!
Dear maintainer,
As part of the 64-bit time_t transition required to support 32-bit
architectures in 2038 and beyond
(https://wiki.debian.org/ReleaseGoals/64bit-time), we have identified
staden-io-lib as a source package shipping runtime libraries whose ABI
either is affected by the change in size of time_t, or could not be
analyzed via abi-compliance-checker (and therefore to be on the safe
side we assume is affected).
To ensure that inconsistent combinations of libraries with their
reverse-dependencies are never installed together, it is necessary to
have a library transition, which is most easily done by renaming the
runtime library package.
Since turning on 64-bit time_t is being handled centrally through a change
to the default dpkg-buildflags (https://bugs.debian.org/1037136), it is
important that libraries affected by this ABI change all be uploaded close
together in time. Therefore I have prepared a 0-day NMU for staden-io-lib
which will initially be uploaded to experimental if possible, then to
unstable after packages have cleared binary NEW.
Please find the patch for this NMU attached.
If you have any concerns about this patch, please reach out ASAP. Although
this package will be uploaded to experimental immediately, there will be a
period of several days before we begin uploads to unstable; so if information
becomes available that your package should not be included in the transition,
there is time for us to amend the planned uploads.
-- System Information:
Debian Release: trixie/sid
APT prefers unstable
APT policy: (500, 'unstable')
Architecture: amd64 (x86_64)
Kernel: Linux 6.5.0-14-generic (SMP w/12 CPU threads; PREEMPT)
Kernel taint flags: TAINT_PROPRIETARY_MODULE, TAINT_OOT_MODULE
Locale: LANG=C, LC_CTYPE=C.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
-------------- next part --------------
diff -Nru staden-io-lib-1.15.0/debian/changelog staden-io-lib-1.15.0/debian/changelog
--- staden-io-lib-1.15.0/debian/changelog 2024-01-20 19:35:25.000000000 +0000
+++ staden-io-lib-1.15.0/debian/changelog 2024-02-05 16:18:04.000000000 +0000
@@ -1,3 +1,11 @@
+staden-io-lib (1.15.0-1.1) experimental; urgency=medium
+
+ * Non-maintainer upload.
+ * Rename libraries for 64-bit time_t transition.
+ * Bump build-dependency on d-shlibs for --t64 support.
+
+ -- Steve Langasek <vorlon at debian.org> Mon, 05 Feb 2024 16:18:04 +0000
+
staden-io-lib (1.15.0-1) unstable; urgency=medium
* Team upload.
diff -Nru staden-io-lib-1.15.0/debian/control staden-io-lib-1.15.0/debian/control
--- staden-io-lib-1.15.0/debian/control 2024-01-20 19:35:25.000000000 +0000
+++ staden-io-lib-1.15.0/debian/control 2024-02-05 16:18:04.000000000 +0000
@@ -10,7 +10,7 @@
zlib1g-dev,
libcurl4-gnutls-dev | libcurl4-nss-dev,
libhtscodecs-dev,
- d-shlibs,
+ d-shlibs (>= 0.106),
libbz2-dev,
liblzma-dev
Standards-Version: 4.6.2
@@ -38,7 +38,7 @@
Package: libstaden-read-dev
Architecture: any
Section: libdevel
-Depends: libstaden-read14 (= ${binary:Version}),
+Depends: libstaden-read14t64 (= ${binary:Version}),
${misc:Depends},
${devlibs:Depends}
Description: development files for libstaden-read
@@ -50,7 +50,10 @@
interface. It has been compiled and tested on a variety of unix systems,
MacOS?X and MS Windows.
-Package: libstaden-read14
+Package: libstaden-read14t64
+Provides: ${t64:Provides}
+Replaces: libstaden-read14
+Conflicts: libstaden-read14 (<< ${source:Version})
Architecture: any
Multi-Arch: same
Section: libs
diff -Nru staden-io-lib-1.15.0/debian/libstaden-read14.symbols staden-io-lib-1.15.0/debian/libstaden-read14.symbols
--- staden-io-lib-1.15.0/debian/libstaden-read14.symbols 2024-01-20 19:35:25.000000000 +0000
+++ staden-io-lib-1.15.0/debian/libstaden-read14.symbols 1970-01-01 00:00:00.000000000 +0000
@@ -1,790 +0,0 @@
-libstaden-read.so.14 libstaden-read14 #MINVER#
-* Build-Depends-Package: libstaden-read-dev
- ArrayCreate at Base 1.14.12
- ArrayDestroy at Base 1.14.12
- ArrayError at Base 1.14.12
- ArrayErrorString at Base 1.14.12
- ArrayExtend at Base 1.14.12
- ArrayRef at Base 1.14.12
- Crc32Lookup at Base 1.14.12
- HashFileCreate at Base 1.14.12
- HashFileDestroy at Base 1.14.12
- HashFileExtract at Base 1.14.12
- HashFileFopen at Base 1.14.12
- HashFileLoad at Base 1.14.12
- HashFileOpen at Base 1.14.12
- HashFileQuery at Base 1.14.12
- HashFileSave at Base 1.14.12
- HashHsieh at Base 1.14.12
- HashJenkins3 at Base 1.14.12
- HashJenkins at Base 1.14.12
- HashTableAdd at Base 1.14.12
- HashTableAddInt64 at Base 1.14.13
- HashTableCreate at Base 1.14.12
- HashTableDel at Base 1.14.12
- HashTableDestroy at Base 1.14.12
- HashTableDump at Base 1.14.12
- HashTableIterCreate at Base 1.14.12
- HashTableIterDestroy at Base 1.14.12
- HashTableIterNext at Base 1.14.12
- HashTableIterReset at Base 1.14.12
- HashTableNext at Base 1.14.12
- HashTableNextInt64 at Base 1.14.13
- HashTableNextInt at Base 1.14.12
- HashTableRemove at Base 1.14.12
- HashTableRemoveInt64 at Base 1.14.13
- HashTableResize at Base 1.14.12
- HashTableSearch at Base 1.14.12
- HashTableSearchInt64 at Base 1.14.13
- HashTableStats at Base 1.14.12
- HashTcl at Base 1.14.12
- MD5_Final at Base 1.14.12
- MD5_Init at Base 1.14.12
- MD5_Update at Base 1.14.12
- abi_reset_data_counts at Base 1.14.12
- abi_set_data_counts at Base 1.14.12
- add_read_names at Base 1.14.12
- append_int64 at Base 1.14.12
- append_int at Base 1.14.12
- append_uint at Base 1.14.12
- bam_add_raw at Base 1.14.12
- bam_aux_A at Base 1.14.12
- bam_aux_Z at Base 1.14.12
- bam_aux_add at Base 1.14.12
- bam_aux_add_data at Base 1.14.12
- bam_aux_add_from_sam at Base 1.14.12
- bam_aux_add_vec at Base 1.14.12
- bam_aux_d at Base 1.14.12
- bam_aux_f at Base 1.14.12
- bam_aux_find at Base 1.14.12
- bam_aux_i at Base 1.14.12
- bam_aux_iter at Base 1.14.12
- bam_aux_iter_full at Base 1.14.12
- bam_aux_size_vec at Base 1.14.12
- bam_aux_skip at Base 1.14.13
- bam_close at Base 1.14.12
- bam_construct_seq at Base 1.14.12
- bam_copy at Base 1.14.12
- bam_dup at Base 1.14.12
- bam_get_seq at Base 1.14.12
- bam_next_seq at Base 1.14.12
- bam_open at Base 1.14.12
- bam_open_block at Base 1.14.12
- bam_put_seq at Base 1.14.12
- bam_set_option at Base 1.14.12
- bam_set_voption at Base 1.14.12
- bam_write_header at Base 1.14.12
- be_read_int_1 at Base 1.14.12
- be_read_int_2 at Base 1.14.12
- be_read_int_4 at Base 1.14.12
- be_read_int_8 at Base 1.14.12
- be_write_int_1 at Base 1.14.12
- be_write_int_2 at Base 1.14.12
- be_write_int_4 at Base 1.14.12
- be_write_int_8 at Base 1.14.12
- bgzf_decode_thread at Base 1.14.12
- bgzf_encode_thread at Base 1.14.12
- bit_reverse at Base 1.14.12
- block_create at Base 1.14.12
- block_destroy at Base 1.14.12
- block_resize at Base 1.14.12
- bzi_close at Base 1.14.12
- bzi_open at Base 1.14.12
- bzi_read at Base 1.14.12
- bzi_seek at Base 1.14.12
- c2fstr at Base 1.14.12
- calc_bit_lengths at Base 1.14.12
- close_fofn at Base 1.14.12
- codes2codeset at Base 1.14.12
- compress_chunk at Base 1.14.12
- compress_file at Base 1.14.12
- compress_int2str at Base 1.14.12
- compress_str2int at Base 1.14.12
- compress_ztr at Base 1.14.12
- compressed_file_exists at Base 1.14.12
- conf2str at Base 1.14.12
- construct_trace_name at Base 1.14.12
- cram_allocate_encoder at Base 1.14.12
- cram_beta_decode_char at Base 1.14.12
- cram_beta_decode_free at Base 1.14.12
- cram_beta_decode_init at Base 1.14.12
- cram_beta_decode_int at Base 1.14.12
- cram_beta_decode_long at Base 1.14.12
- cram_beta_encode_char at Base 1.14.12
- cram_beta_encode_free at Base 1.14.12
- cram_beta_encode_init at Base 1.14.12
- cram_beta_encode_int at Base 1.14.12
- cram_beta_encode_long at Base 1.14.12
- cram_beta_encode_store at Base 1.14.12
- cram_block_method2str at Base 1.14.12
- cram_byte_array_len_decode at Base 1.14.12
- cram_byte_array_len_decode_free at Base 1.14.12
- cram_byte_array_len_decode_init at Base 1.14.12
- cram_byte_array_len_encode at Base 1.14.12
- cram_byte_array_len_encode_free at Base 1.14.12
- cram_byte_array_len_encode_init at Base 1.14.12
- cram_byte_array_len_encode_store at Base 1.14.12
- cram_byte_array_stop_decode_block at Base 1.14.12
- cram_byte_array_stop_decode_free at Base 1.14.12
- cram_byte_array_stop_decode_init at Base 1.14.12
- cram_byte_array_stop_encode at Base 1.14.12
- cram_byte_array_stop_encode_free at Base 1.14.12
- cram_byte_array_stop_encode_init at Base 1.14.12
- cram_byte_array_stop_encode_store at Base 1.14.12
- cram_close at Base 1.14.12
- cram_codec_decoder2encoder at Base 1.14.12
- cram_codec_to_id at Base 1.14.12
- cram_compress_block at Base 1.14.12
- cram_const_decode_byte at Base 1.14.13
- cram_const_decode_free at Base 1.14.13
- cram_const_decode_init at Base 1.14.13
- cram_const_decode_int at Base 1.14.13
- cram_const_decode_long at Base 1.14.13
- cram_const_decode_size at Base 1.14.13
- cram_const_encode at Base 1.14.13
- cram_const_encode_init at Base 1.14.13
- cram_const_encode_store at Base 1.14.13
- cram_content_type2str at Base 1.14.12
- cram_deallocate_encoder at Base 1.14.12
- cram_decode_TD at Base 1.14.12
- cram_decode_compression_header at Base 1.14.12
- cram_decode_estimate_sizes at Base 1.14.12
- cram_decode_slice at Base 1.14.12
- cram_decode_slice_header at Base 1.14.12
- cram_decode_slice_mt at Base 1.14.12
- cram_decode_slice_thread at Base 1.14.12
- cram_decoder_init at Base 1.14.12
- cram_default_version at Base 1.14.12
- cram_dependent_data_series at Base 1.14.12
- cram_encode_compression_header at Base 1.14.12
- cram_encode_container at Base 1.14.12
- cram_encode_slice_header at Base 1.14.12
- cram_encoder_get_fd at Base 1.14.13
- cram_encoder_init at Base 1.14.12
- cram_encoding2str at Base 1.14.12
- cram_enque_compression_block at Base 1.14.12
- cram_eof at Base 1.14.12
- cram_external_decode_char at Base 1.14.12
- cram_external_decode_free at Base 1.14.12
- cram_external_decode_init at Base 1.14.12
- cram_external_decode_int at Base 1.14.12
- cram_external_decode_long at Base 1.14.12
- cram_external_decode_size at Base 1.14.12
- cram_external_encode_char at Base 1.14.12
- cram_external_encode_free at Base 1.14.12
- cram_external_encode_init at Base 1.14.12
- cram_external_encode_int at Base 1.14.12
- cram_external_encode_long at Base 1.14.12
- cram_external_encode_sint at Base 1.14.12
- cram_external_encode_slong at Base 1.14.12
- cram_external_encode_store at Base 1.14.12
- cram_external_get_block at Base 1.14.12
- cram_flush at Base 1.14.12
- cram_flush_container at Base 1.14.12
- cram_flush_container_mt at Base 1.14.12
- cram_flush_thread at Base 1.14.12
- cram_free_block at Base 1.14.12
- cram_free_compression_header at Base 1.14.12
- cram_free_container at Base 1.14.12
- cram_free_file_def at Base 1.14.12
- cram_free_slice at Base 1.14.12
- cram_free_slice_header at Base 1.14.12
- cram_gamma_decode at Base 1.14.12
- cram_gamma_decode_free at Base 1.14.12
- cram_gamma_decode_init at Base 1.14.12
- cram_get_bam_seq at Base 1.14.12
- cram_get_ref at Base 1.14.12
- cram_get_seq at Base 1.14.12
- cram_huffman_decode_char0 at Base 1.14.12
- cram_huffman_decode_char at Base 1.14.12
- cram_huffman_decode_free at Base 1.14.12
- cram_huffman_decode_init at Base 1.14.12
- cram_huffman_decode_int0 at Base 1.14.12
- cram_huffman_decode_int at Base 1.14.12
- cram_huffman_decode_long0 at Base 1.14.12
- cram_huffman_decode_long at Base 1.14.12
- cram_huffman_decode_null at Base 1.14.12
- cram_huffman_encode_char0 at Base 1.14.12
- cram_huffman_encode_char at Base 1.14.12
- cram_huffman_encode_free at Base 1.14.12
- cram_huffman_encode_init at Base 1.14.12
- cram_huffman_encode_int0 at Base 1.14.12
- cram_huffman_encode_int at Base 1.14.12
- cram_huffman_encode_long0 at Base 1.14.12
- cram_huffman_encode_long at Base 1.14.12
- cram_huffman_encode_store at Base 1.14.12
- cram_index_build at Base 1.14.12
- cram_index_free at Base 1.14.12
- cram_index_load at Base 1.14.12
- cram_index_load_via_callbacks at Base 1.14.12
- cram_index_query at Base 1.14.12
- cram_init_varint at Base 1.14.12
- cram_io_allocate_output_buffer at Base 1.14.12
- cram_io_close at Base 1.14.12
- cram_io_deallocate_output_buffer at Base 1.14.12
- cram_io_flush_output_buffer at Base 1.14.12
- cram_io_input_buffer_fgets at Base 1.14.12
- cram_io_input_buffer_read at Base 1.14.12
- cram_io_input_buffer_seek at Base 1.14.12
- cram_io_input_buffer_underflow at Base 1.14.12
- cram_io_open at Base 1.14.12
- cram_io_open_by_callbacks at Base 1.14.12
- cram_io_openw_by_callbacks at Base 1.14.12
- cram_io_output_buffer_putc at Base 1.14.12
- cram_io_output_buffer_write at Base 1.14.12
- cram_load_reference at Base 1.14.12
- cram_mem_write_callback at Base 1.14.12
- cram_new_block at Base 1.14.12
- cram_new_compression_header at Base 1.14.12
- cram_new_container at Base 1.14.12
- cram_new_metrics at Base 1.14.12
- cram_new_slice at Base 1.14.12
- cram_nop_decode_reset at Base 1.14.12
- cram_open at Base 1.14.12
- cram_open_by_callbacks at Base 1.14.12
- cram_openw_by_callbacks at Base 1.14.12
- cram_process_work_package at Base 1.14.12
- cram_put_bam_seq at Base 1.14.12
- cram_read_SAM_hdr at Base 1.14.12
- cram_read_block at Base 1.14.12
- cram_read_container at Base 1.14.12
- cram_read_file_def at Base 1.14.12
- cram_read_slice at Base 1.14.12
- cram_ref_decr at Base 1.14.12
- cram_ref_incr at Base 1.14.12
- cram_ref_load at Base 1.14.12
- cram_seek at Base 1.14.12
- cram_seek_to_refpos at Base 1.14.12
- cram_set_option at Base 1.14.12
- cram_set_voption at Base 1.14.12
- cram_stats_add at Base 1.14.12
- cram_stats_create at Base 1.14.12
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- cram_stats_dump at Base 1.14.12
- cram_stats_encoding at Base 1.14.12
- cram_stats_free at Base 1.14.12
- cram_stats_qual at Base 1.14.12
- cram_subexp_decode at Base 1.14.12
- cram_subexp_decode_free at Base 1.14.12
- cram_subexp_decode_init at Base 1.14.12
- cram_uncompress_block at Base 1.14.12
- cram_update_curr_slice at Base 1.14.12
- cram_varint_decode_free at Base 1.14.13
- cram_varint_decode_init at Base 1.14.13
- cram_varint_decode_int at Base 1.14.13
- cram_varint_decode_long at Base 1.14.13
- cram_varint_decode_sint at Base 1.14.13
- cram_varint_decode_size at Base 1.14.13
- cram_varint_decode_slong at Base 1.14.13
- cram_varint_encode_free at Base 1.14.13
- cram_varint_encode_init at Base 1.14.13
- cram_varint_encode_int at Base 1.14.13
- cram_varint_encode_long at Base 1.14.13
- cram_varint_encode_sint at Base 1.14.13
- cram_varint_encode_slong at Base 1.14.13
- cram_varint_encode_store at Base 1.14.13
- cram_varint_get_block at Base 1.14.13
- cram_write_SAM_hdr at Base 1.14.12
- cram_write_SAM_hdr at Base 1.14.12
- cram_write_block at Base 1.14.12
- cram_write_container at Base 1.14.12
- cram_write_eof_block at Base 1.14.12
- cram_write_file_def at Base 1.14.12
- cram_xdelta_decode_block at Base 1.14.12
- cram_xdelta_decode_char at Base 1.14.12
- cram_xdelta_decode_free at Base 1.14.12
- cram_xdelta_decode_init at Base 1.14.12
- cram_xdelta_decode_int at Base 1.14.12
- cram_xdelta_decode_long at Base 1.14.12
- cram_xdelta_decode_size at Base 1.14.12
- cram_xdelta_encode_char at Base 1.14.12
- cram_xdelta_encode_flush at Base 1.14.12
- cram_xdelta_encode_free at Base 1.14.12
- cram_xdelta_encode_init at Base 1.14.12
- cram_xdelta_encode_int at Base 1.14.12
- cram_xdelta_encode_long at Base 1.14.12
- cram_xdelta_encode_store at Base 1.14.12
- cram_xdelta_get_block at Base 1.14.12
- cram_xpack_decode_char at Base 1.14.12
- cram_xpack_decode_free at Base 1.14.12
- cram_xpack_decode_init at Base 1.14.12
- cram_xpack_decode_int at Base 1.14.12
- cram_xpack_decode_long at Base 1.14.12
- cram_xpack_decode_size at Base 1.14.12
- cram_xpack_encode_char at Base 1.14.12
- cram_xpack_encode_flush at Base 1.14.12
- cram_xpack_encode_free at Base 1.14.12
- cram_xpack_encode_init at Base 1.14.12
- cram_xpack_encode_int at Base 1.14.12
- cram_xpack_encode_long at Base 1.14.12
- cram_xpack_encode_store at Base 1.14.12
- cram_xpack_get_block at Base 1.14.12
- cram_xrle_decode_char at Base 1.14.12
- cram_xrle_decode_free at Base 1.14.12
- cram_xrle_decode_init at Base 1.14.12
- cram_xrle_decode_int at Base 1.14.12
- cram_xrle_decode_long at Base 1.14.12
- cram_xrle_decode_size at Base 1.14.12
- cram_xrle_encode_char at Base 1.14.12
- cram_xrle_encode_flush at Base 1.14.12
- cram_xrle_encode_free at Base 1.14.12
- cram_xrle_encode_init at Base 1.14.12
- cram_xrle_encode_int at Base 1.14.12
- cram_xrle_encode_long at Base 1.14.12
- cram_xrle_encode_store at Base 1.14.12
- cram_xrle_get_block at Base 1.14.12
- crc32_16bytes at Base 1.14.12
- decode_sff_common_header at Base 1.14.12
- decode_sff_read_header at Base 1.14.12
- decorrelate1 at Base 1.14.12
- decorrelate1dyn at Base 1.14.12
- decorrelate2 at Base 1.14.12
- decorrelate2dyn at Base 1.14.12
- decorrelate4 at Base 1.14.12
- delete_ztr at Base 1.14.12
- determine_trace_type at Base 1.14.12
- dstring_append at Base 1.14.12
- dstring_append_char at Base 1.14.12
- dstring_append_hex_encoded at Base 1.14.12
- dstring_append_int at Base 1.14.12
- dstring_appendf at Base 1.14.12
- dstring_create at Base 1.14.12
- dstring_create_with at Base 1.14.12
- dstring_delete at Base 1.14.12
- dstring_destroy at Base 1.14.12
- dstring_dinsert at Base 1.14.12
- dstring_dreplace at Base 1.14.12
- dstring_empty at Base 1.14.12
- dstring_escape_html at Base 1.14.12
- dstring_find at Base 1.14.12
- dstring_find_replace at Base 1.14.12
- dstring_find_replace_all at Base 1.14.12
- dstring_htmlise_links at Base 1.14.12
- dstring_insert at Base 1.14.12
- dstring_insertf at Base 1.14.12
- dstring_length at Base 1.14.12
- dstring_nappend at Base 1.14.12
- dstring_ninsert at Base 1.14.12
- dstring_nprepend at Base 1.14.12
- dstring_perror at Base 1.14.12
- dstring_prepend at Base 1.14.12
- dstring_prependf at Base 1.14.12
- dstring_refresh_length at Base 1.14.12
- dstring_replace at Base 1.14.12
- dstring_resize at Base 1.14.12
- dstring_str at Base 1.14.12
- dstring_to_html at Base 1.14.12
- dstring_vinsertf at Base 1.14.12
- dump_labels at Base 1.14.12
- eflt_feature_ids at Base 1.14.12
- encode_sff_common_header at Base 1.14.12
- encode_sff_read_header at Base 1.14.12
- errout at Base 1.14.12
- exp2read at Base 1.14.12
- exp_close at Base 1.14.12
- exp_create_info at Base 1.14.12
- exp_create_range at Base 1.14.12
- exp_destroy_info at Base 1.14.12
- exp_extract_range at Base 1.14.12
- exp_fread_info at Base 1.14.12
- exp_get_feature_index at Base 1.14.12
- exp_get_int at Base 1.14.12
- exp_get_rng at Base 1.14.12
- exp_get_str at Base 1.14.12
- exp_mfread_info at Base 1.14.12
- exp_print_file at Base 1.14.12
- exp_print_line at Base 1.14.12
- exp_print_mfile at Base 1.14.12
- exp_print_mline at Base 1.14.12
- exp_print_seq at Base 1.14.12
- exp_put_int at Base 1.14.12
- exp_put_rng at Base 1.14.12
- exp_put_str at Base 1.14.12
- exp_read_info at Base 1.14.12
- exp_set_entry at Base 1.14.12
- expand_8to16 at Base 1.14.12
- expand_8to32 at Base 1.14.12
- expand_cache_path at Base 1.14.12
- expcr_ at Base 1.14.12
- expected_template_count at Base 1.14.12
- exper_ at Base 1.14.12
- expkil_ at Base 1.14.12
- expopn_ at Base 1.14.12
- expri_ at Base 1.14.12
- exprr_ at Base 1.14.12
- exprs_ at Base 1.14.12
- exprsa_ at Base 1.14.12
- expwi_ at Base 1.14.12
- expwr_ at Base 1.14.12
- expws_ at Base 1.14.12
- expwsa_ at Base 1.14.12
- f2cstr at Base 1.14.12
- fcompress_file at Base 1.14.12
- fdetermine_trace_type at Base 1.14.12
- file_exists at Base 1.14.12
- file_size at Base 1.14.12
- find_file_url at Base 1.14.12
- flen at Base 1.14.12
- follow1 at Base 1.14.12
- fopen_compressed at Base 1.14.12
- fread_abi at Base 1.14.12
- fread_alf at Base 1.14.12
- fread_pln at Base 1.14.12
- fread_reading at Base 1.14.12
- fread_scf at Base 1.14.12
- fread_ztr at Base 1.14.12
- free_sff_common_header at Base 1.14.12
- free_sff_read_data at Base 1.14.12
- free_sff_read_header at Base 1.14.12
- freopen_compressed at Base 1.14.12
- fstrlen at Base 1.14.12
- fwrite_abi at Base 1.14.12
- fwrite_alf at Base 1.14.12
- fwrite_pln at Base 1.14.12
- fwrite_reading at Base 1.14.12
- fwrite_scf at Base 1.14.12
- fwrite_ztr at Base 1.14.12
- generate_code_set at Base 1.14.12
- generate_consensus at Base 1.14.12
- getABIIndexEntryLW at Base 1.14.12
- getABIIndexEntrySW at Base 1.14.12
- getABIIndexOffset at Base 1.14.12
- getABIString at Base 1.14.12
- getABIint1 at Base 1.14.12
- getABIint2 at Base 1.14.12
- getABIint4 at Base 1.14.12
- get_compression_method at Base 1.14.12
- get_read_conf at Base 1.14.12
- gzi_index_add_block at Base 1.14.12
- gzi_index_dump at Base 1.14.12
- gzi_index_free at Base 1.14.12
- gzi_index_init at Base 1.14.12
- gzi_index_load at Base 1.14.12
- gzi_load at Base 1.14.12
- hash64 at Base 1.14.12
- hash at Base 1.14.12
- huffman_codes_destroy at Base 1.14.12
- huffman_codeset_destroy at Base 1.14.12
- huffman_decode at Base 1.14.12
- huffman_multi_decode at Base 1.14.12
- huffman_multi_encode at Base 1.14.12
- ichebcomp at Base 1.14.12
- ichebuncomp at Base 1.14.12
- illumina_bin at Base 1.14.12
- illumina_bin_33 at Base 1.14.12
- init_decode_tables at Base 1.14.12
- int32_decode at Base 1.14.12
- int32_encode at Base 1.14.12
- int32_get_blk at Base 1.14.12
- int32_put at Base 1.14.12
- int_to_float at Base 1.14.12
- iolib_crc32 at Base 1.14.12
- iolib_get_exp_path at Base 1.14.12
- iolib_get_trace_path at Base 1.14.12
- iolib_set_exp_path at Base 1.14.12
- iolib_set_trace_path at Base 1.14.12
- is_directory at Base 1.14.12
- is_file at Base 1.14.12
- is_scf at Base 1.14.12
- itf8_bytes at Base 1.14.12
- itf8_decode_crc at Base 1.14.12
- itf8_put_blk at Base 1.14.12
- itf8_size at Base 1.14.12
- le_read_int_1 at Base 1.14.12
- le_read_int_2 at Base 1.14.12
- le_read_int_4 at Base 1.14.12
- le_read_int_8 at Base 1.14.12
- le_write_int_1 at Base 1.14.12
- le_write_int_2 at Base 1.14.12
- le_write_int_4 at Base 1.14.12
- le_write_int_8 at Base 1.14.12
- load_ref_portion at Base 1.14.12
- log2_data at Base 1.14.12
- lossy_read_names at Base 1.14.12
- ltf8_bytes at Base 1.14.12
- ltf8_decode at Base 1.14.12
- ltf8_decode_crc at Base 1.14.12
- ltf8_put_blk at Base 1.14.12
- memgunzip at Base 1.14.12
- memgzip at Base 1.14.12
- mfascii at Base 1.14.12
- mfclose at Base 1.14.12
- mfcreate at Base 1.14.12
- mfcreate_from at Base 1.14.12
- mfdestroy at Base 1.14.12
- mfdetach at Base 1.14.12
- mfeof at Base 1.14.12
- mfflush at Base 1.14.12
- mfgetc at Base 1.14.12
- mfgets at Base 1.14.12
- mfmmap at Base 1.14.12
- mfopen at Base 1.14.12
- mfprintf at Base 1.14.12
- mfread at Base 1.14.12
- mfread_abi at Base 1.14.12
- mfread_alf at Base 1.14.12
- mfread_pln at Base 1.14.12
- mfread_reading at Base 1.14.12
- mfread_scf at Base 1.14.12
- mfread_sff at Base 1.14.12
- mfread_ztr at Base 1.14.12
- mfrecreate at Base 1.14.12
- mfreopen at Base 1.14.12
- mfseek at Base 1.14.12
- mfsteal at Base 1.14.12
- mftell at Base 1.14.12
- mftruncate at Base 1.14.12
- mfwrite at Base 1.14.12
- mfwrite_abi at Base 1.14.12
- mfwrite_alf at Base 1.14.12
- mfwrite_pln at Base 1.14.12
- mfwrite_reading at Base 1.14.12
- mfwrite_scf at Base 1.14.12
- mfwrite_ztr at Base 1.14.12
- mkdir_prefix at Base 1.14.12
- mrewind at Base 1.14.12
- mstderr at Base 1.14.12
- mstdin at Base 1.14.12
- mstdout at Base 1.14.12
- mungetc at Base 1.14.12
- myfind at Base 1.14.12
- mystrtok at Base 1.14.12
- new_ztr at Base 1.14.12
- next_symbol at Base 1.14.12
- open_exp_file at Base 1.14.12
- open_exp_mfile at Base 1.14.12
- open_fofn at Base 1.14.12
- open_path_file at Base 1.14.12
- open_path_mfile at Base 1.14.12
- open_trace_file at Base 1.14.12
- open_trace_mfile at Base 1.14.12
- opos2str at Base 1.14.12
- pack_trace_suffix at Base 1.14.12
- paranoid_fclose at Base 1.14.12
- partial_decode_ztr at Base 1.14.12
- pool_alloc at Base 1.14.12
- pool_create at Base 1.14.12
- pool_destroy at Base 1.14.12
- pool_free at Base 1.14.12
- qshift at Base 1.14.12
- read2exp at Base 1.14.12
- read2scf at Base 1.14.12
- read2ztr at Base 1.14.12
- read_abi at Base 1.14.12
- read_alf at Base 1.14.12
- read_allocate at Base 1.14.12
- read_deallocate at Base 1.14.12
- read_dup at Base 1.14.12
- read_experiment_redirect at Base 1.14.12
- read_fofn at Base 1.14.12
- read_pln at Base 1.14.12
- read_reading at Base 1.14.12
- read_scf at Base 1.14.12
- read_scf_base at Base 1.14.12
- read_scf_bases3 at Base 1.14.12
- read_scf_bases at Base 1.14.12
- read_scf_comment at Base 1.14.12
- read_scf_header at Base 1.14.12
- read_scf_sample1 at Base 1.14.12
- read_scf_sample2 at Base 1.14.12
- read_scf_samples1 at Base 1.14.12
- read_scf_samples2 at Base 1.14.12
- read_scf_samples31 at Base 1.14.12
- read_scf_samples32 at Base 1.14.12
- read_sections at Base 1.14.12
- read_sff_common_header at Base 1.14.12
- read_sff_read_data at Base 1.14.12
- read_sff_read_header at Base 1.14.12
- read_update_base_positions at Base 1.14.12
- read_update_confidence_values at Base 1.14.12
- recorrelate1 at Base 1.14.12
- recorrelate2 at Base 1.14.12
- recorrelate4 at Base 1.14.12
- refs2id at Base 1.14.12
- refs_free at Base 1.14.12
- refs_load_fai at Base 1.14.12
- remove_extension at Base 1.14.12
- remove_file at Base 1.14.12
- reset_metrics at Base 1.14.12
- restore_codes at Base 1.14.12
- restore_codes_single at Base 1.14.12
- rle at Base 1.14.12
- safe_itf8_put at Base 1.14.12
- safe_ltf8_put at Base 1.14.12
- sam_hdr_PG_ID at Base 1.14.12
- sam_hdr_add at Base 1.14.12
- sam_hdr_add_PG at Base 1.14.12
- sam_hdr_add_lines at Base 1.14.12
- sam_hdr_decr_ref at Base 1.14.12
- sam_hdr_dump at Base 1.14.12
- sam_hdr_dup at Base 1.14.12
- sam_hdr_find at Base 1.14.12
- sam_hdr_find_key at Base 1.14.12
- sam_hdr_find_line at Base 1.14.12
- sam_hdr_find_rg at Base 1.14.12
- sam_hdr_free at Base 1.14.12
- sam_hdr_incr_ref at Base 1.14.12
- sam_hdr_length at Base 1.14.12
- sam_hdr_link_pg at Base 1.14.12
- sam_hdr_name2ref at Base 1.14.12
- sam_hdr_new at Base 1.14.12
- sam_hdr_parse at Base 1.14.12
- sam_hdr_rebuild at Base 1.14.12
- sam_hdr_sort_order at Base 1.14.12
- sam_hdr_str at Base 1.14.12
- sam_hdr_update at Base 1.14.12
- sam_hdr_vadd at Base 1.14.12
- scf2read at Base 1.14.12
- scf_allocate at Base 1.14.12
- scf_deallocate at Base 1.14.12
- scf_delta_samples1 at Base 1.14.12
- scf_delta_samples2 at Base 1.14.12
- scf_version_float2str at Base 1.14.12
- scf_version_str2float at Base 1.14.12
- scram_close at Base 1.14.12
- scram_get_header at Base 1.14.12
- scram_get_refs at Base 1.14.12
- scram_get_seq at Base 1.14.12
- scram_init at Base 1.14.12
- scram_input_bam_block at Base 1.14.12
- scram_line at Base 1.14.12
- scram_next_seq at Base 1.14.12
- scram_open at Base 1.14.12
- scram_open_cram_via_callbacks at Base 1.14.12
- scram_put_seq at Base 1.14.12
- scram_set_header at Base 1.14.12
- scram_set_option at Base 1.14.12
- scram_set_refs at Base 1.14.12
- scram_write_header at Base 1.14.12
- set_compression_method at Base 1.14.12
- set_scf_version at Base 1.14.12
- shrink_16to8 at Base 1.14.12
- shrink_32to8 at Base 1.14.12
- srf_construct_cont_hdr at Base 1.14.12
- srf_construct_trace_body at Base 1.14.12
- srf_construct_trace_hdr at Base 1.14.12
- srf_create at Base 1.14.12
- srf_destroy at Base 1.14.12
- srf_destroy_cont_hdr at Base 1.14.12
- srf_destroy_trace_body at Base 1.14.12
- srf_destroy_trace_hdr at Base 1.14.12
- srf_find_trace at Base 1.14.12
- srf_index_add_cont_hdr at Base 1.14.12
- srf_index_add_trace_body at Base 1.14.12
- srf_index_add_trace_hdr at Base 1.14.12
- srf_index_create at Base 1.14.12
- srf_index_destroy at Base 1.14.12
- srf_index_stats at Base 1.14.12
- srf_index_write at Base 1.14.12
- srf_next_block_details at Base 1.14.12
- srf_next_block_type at Base 1.14.12
- srf_next_trace at Base 1.14.12
- srf_next_ztr at Base 1.14.12
- srf_next_ztr_flags at Base 1.14.12
- srf_open at Base 1.14.12
- srf_read_cont_hdr at Base 1.14.12
- srf_read_index_hdr at Base 1.14.12
- srf_read_pstring at Base 1.14.12
- srf_read_trace_body at Base 1.14.12
- srf_read_trace_hdr at Base 1.14.12
- srf_read_uint32 at Base 1.14.12
- srf_read_uint64 at Base 1.14.12
- srf_read_xml at Base 1.14.12
- srf_write_cont_hdr at Base 1.14.12
- srf_write_index_hdr at Base 1.14.12
- srf_write_pstring at Base 1.14.12
- srf_write_pstringb at Base 1.14.12
- srf_write_trace_body at Base 1.14.12
- srf_write_trace_hdr at Base 1.14.12
- srf_write_uint32 at Base 1.14.12
- srf_write_uint64 at Base 1.14.12
- srf_write_xml at Base 1.14.12
- sthuff at Base 1.14.12
- store_bytes at Base 1.14.12
- store_codes at Base 1.14.12
- store_codes_single at Base 1.14.12
- str2conf at Base 1.14.12
- str2opos at Base 1.14.12
- str_tolower at Base 1.14.12
- str_toupper at Base 1.14.12
- string_alloc at Base 1.14.12
- string_dup at Base 1.14.12
- string_ndup at Base 1.14.12
- string_pool_create at Base 1.14.12
- string_pool_destroy at Base 1.14.12
- stringify_argv at Base 1.14.12
- t_pool_delete_result at Base 1.14.12
- t_pool_destroy at Base 1.14.12
- t_pool_dispatch2 at Base 1.14.12
- t_pool_dispatch at Base 1.14.12
- t_pool_flush at Base 1.14.12
- t_pool_init at Base 1.14.12
- t_pool_next_result at Base 1.14.12
- t_pool_next_result_wait at Base 1.14.12
- t_pool_results_queue_empty at Base 1.14.12
- t_pool_results_queue_len at Base 1.14.12
- t_pool_results_queue_sz at Base 1.14.12
- t_results_queue_destroy at Base 1.14.12
- t_results_queue_init at Base 1.14.12
- tokenise_search_path at Base 1.14.12
- trace_type_int2str at Base 1.14.12
- trace_type_str2int at Base 1.14.12
- trace_type_str at Base 1.14.12
- tshift at Base 1.14.12
- uncompress_chunk at Base 1.14.12
- uncompress_ztr at Base 1.14.12
- unfollow1 at Base 1.14.12
- unlog2_data at Base 1.14.12
- unqshift at Base 1.14.12
- unrle at Base 1.14.12
- unsthuff at Base 1.14.12
- untshift at Base 1.14.12
- unxrle2 at Base 1.14.12
- unxrle at Base 1.14.12
- vflen at Base 1.14.12
- write_abi at Base 1.14.12
- write_alf at Base 1.14.12
- write_pln at Base 1.14.12
- write_reading at Base 1.14.12
- write_scf at Base 1.14.12
- write_scf_base at Base 1.14.12
- write_scf_bases3 at Base 1.14.12
- write_scf_bases at Base 1.14.12
- write_scf_comment at Base 1.14.12
- write_scf_header at Base 1.14.12
- write_scf_sample1 at Base 1.14.12
- write_scf_sample2 at Base 1.14.12
- write_scf_samples1 at Base 1.14.12
- write_scf_samples2 at Base 1.14.12
- write_scf_samples31 at Base 1.14.12
- write_scf_samples32 at Base 1.14.12
- xcalloc at Base 1.14.12
- xfree at Base 1.14.12
- xmalloc at Base 1.14.12
- xrealloc at Base 1.14.12
- xrle2 at Base 1.14.12
- xrle at Base 1.14.12
- zfclose at Base 1.14.12
- zfeof at Base 1.14.12
- zfgets at Base 1.14.12
- zfopen at Base 1.14.12
- zfpeek at Base 1.14.12
- zfputs at Base 1.14.12
- zfseeko at Base 1.14.12
- zftello at Base 1.14.12
- zlib_dehuff at Base 1.14.12
- zlib_huff at Base 1.14.12
- zlib_mem_inflate at Base 1.14.12
- ztr2read at Base 1.14.12
- ztr_add_hcode at Base 1.14.12
- ztr_add_text at Base 1.14.12
- ztr_dup at Base 1.14.12
- ztr_find_chunks at Base 1.14.12
- ztr_find_hcode at Base 1.14.12
- ztr_find_hcode_chunk at Base 1.14.12
- ztr_lookup_mdata_value at Base 1.14.12
- ztr_new_chunk at Base 1.14.12
- ztr_process_text at Base 1.14.12
- ztr_read_chunk_hdr at Base 1.14.12
- ztr_read_header at Base 1.14.12
- ztr_store_hcodes at Base 1.14.12
diff -Nru staden-io-lib-1.15.0/debian/libstaden-read14t64.lintian-overrides staden-io-lib-1.15.0/debian/libstaden-read14t64.lintian-overrides
--- staden-io-lib-1.15.0/debian/libstaden-read14t64.lintian-overrides 1970-01-01 00:00:00.000000000 +0000
+++ staden-io-lib-1.15.0/debian/libstaden-read14t64.lintian-overrides 2024-02-05 16:18:04.000000000 +0000
@@ -0,0 +1 @@
+libstaden-read14t64: package-name-doesnt-match-sonames libstaden-read14
diff -Nru staden-io-lib-1.15.0/debian/libstaden-read14t64.symbols staden-io-lib-1.15.0/debian/libstaden-read14t64.symbols
--- staden-io-lib-1.15.0/debian/libstaden-read14t64.symbols 1970-01-01 00:00:00.000000000 +0000
+++ staden-io-lib-1.15.0/debian/libstaden-read14t64.symbols 2024-02-05 16:18:04.000000000 +0000
@@ -0,0 +1,790 @@
+libstaden-read.so.14 libstaden-read14t64 #MINVER#
+* Build-Depends-Package: libstaden-read-dev
+ ArrayCreate at Base 1.14.12
+ ArrayDestroy at Base 1.14.12
+ ArrayError at Base 1.14.12
+ ArrayErrorString at Base 1.14.12
+ ArrayExtend at Base 1.14.12
+ ArrayRef at Base 1.14.12
+ Crc32Lookup at Base 1.14.12
+ HashFileCreate at Base 1.14.12
+ HashFileDestroy at Base 1.14.12
+ HashFileExtract at Base 1.14.12
+ HashFileFopen at Base 1.14.12
+ HashFileLoad at Base 1.14.12
+ HashFileOpen at Base 1.14.12
+ HashFileQuery at Base 1.14.12
+ HashFileSave at Base 1.14.12
+ HashHsieh at Base 1.14.12
+ HashJenkins3 at Base 1.14.12
+ HashJenkins at Base 1.14.12
+ HashTableAdd at Base 1.14.12
+ HashTableAddInt64 at Base 1.14.13
+ HashTableCreate at Base 1.14.12
+ HashTableDel at Base 1.14.12
+ HashTableDestroy at Base 1.14.12
+ HashTableDump at Base 1.14.12
+ HashTableIterCreate at Base 1.14.12
+ HashTableIterDestroy at Base 1.14.12
+ HashTableIterNext at Base 1.14.12
+ HashTableIterReset at Base 1.14.12
+ HashTableNext at Base 1.14.12
+ HashTableNextInt64 at Base 1.14.13
+ HashTableNextInt at Base 1.14.12
+ HashTableRemove at Base 1.14.12
+ HashTableRemoveInt64 at Base 1.14.13
+ HashTableResize at Base 1.14.12
+ HashTableSearch at Base 1.14.12
+ HashTableSearchInt64 at Base 1.14.13
+ HashTableStats at Base 1.14.12
+ HashTcl at Base 1.14.12
+ MD5_Final at Base 1.14.12
+ MD5_Init at Base 1.14.12
+ MD5_Update at Base 1.14.12
+ abi_reset_data_counts at Base 1.14.12
+ abi_set_data_counts at Base 1.14.12
+ add_read_names at Base 1.14.12
+ append_int64 at Base 1.14.12
+ append_int at Base 1.14.12
+ append_uint at Base 1.14.12
+ bam_add_raw at Base 1.14.12
+ bam_aux_A at Base 1.14.12
+ bam_aux_Z at Base 1.14.12
+ bam_aux_add at Base 1.14.12
+ bam_aux_add_data at Base 1.14.12
+ bam_aux_add_from_sam at Base 1.14.12
+ bam_aux_add_vec at Base 1.14.12
+ bam_aux_d at Base 1.14.12
+ bam_aux_f at Base 1.14.12
+ bam_aux_find at Base 1.14.12
+ bam_aux_i at Base 1.14.12
+ bam_aux_iter at Base 1.14.12
+ bam_aux_iter_full at Base 1.14.12
+ bam_aux_size_vec at Base 1.14.12
+ bam_aux_skip at Base 1.14.13
+ bam_close at Base 1.14.12
+ bam_construct_seq at Base 1.14.12
+ bam_copy at Base 1.14.12
+ bam_dup at Base 1.14.12
+ bam_get_seq at Base 1.14.12
+ bam_next_seq at Base 1.14.12
+ bam_open at Base 1.14.12
+ bam_open_block at Base 1.14.12
+ bam_put_seq at Base 1.14.12
+ bam_set_option at Base 1.14.12
+ bam_set_voption at Base 1.14.12
+ bam_write_header at Base 1.14.12
+ be_read_int_1 at Base 1.14.12
+ be_read_int_2 at Base 1.14.12
+ be_read_int_4 at Base 1.14.12
+ be_read_int_8 at Base 1.14.12
+ be_write_int_1 at Base 1.14.12
+ be_write_int_2 at Base 1.14.12
+ be_write_int_4 at Base 1.14.12
+ be_write_int_8 at Base 1.14.12
+ bgzf_decode_thread at Base 1.14.12
+ bgzf_encode_thread at Base 1.14.12
+ bit_reverse at Base 1.14.12
+ block_create at Base 1.14.12
+ block_destroy at Base 1.14.12
+ block_resize at Base 1.14.12
+ bzi_close at Base 1.14.12
+ bzi_open at Base 1.14.12
+ bzi_read at Base 1.14.12
+ bzi_seek at Base 1.14.12
+ c2fstr at Base 1.14.12
+ calc_bit_lengths at Base 1.14.12
+ close_fofn at Base 1.14.12
+ codes2codeset at Base 1.14.12
+ compress_chunk at Base 1.14.12
+ compress_file at Base 1.14.12
+ compress_int2str at Base 1.14.12
+ compress_str2int at Base 1.14.12
+ compress_ztr at Base 1.14.12
+ compressed_file_exists at Base 1.14.12
+ conf2str at Base 1.14.12
+ construct_trace_name at Base 1.14.12
+ cram_allocate_encoder at Base 1.14.12
+ cram_beta_decode_char at Base 1.14.12
+ cram_beta_decode_free at Base 1.14.12
+ cram_beta_decode_init at Base 1.14.12
+ cram_beta_decode_int at Base 1.14.12
+ cram_beta_decode_long at Base 1.14.12
+ cram_beta_encode_char at Base 1.14.12
+ cram_beta_encode_free at Base 1.14.12
+ cram_beta_encode_init at Base 1.14.12
+ cram_beta_encode_int at Base 1.14.12
+ cram_beta_encode_long at Base 1.14.12
+ cram_beta_encode_store at Base 1.14.12
+ cram_block_method2str at Base 1.14.12
+ cram_byte_array_len_decode at Base 1.14.12
+ cram_byte_array_len_decode_free at Base 1.14.12
+ cram_byte_array_len_decode_init at Base 1.14.12
+ cram_byte_array_len_encode at Base 1.14.12
+ cram_byte_array_len_encode_free at Base 1.14.12
+ cram_byte_array_len_encode_init at Base 1.14.12
+ cram_byte_array_len_encode_store at Base 1.14.12
+ cram_byte_array_stop_decode_block at Base 1.14.12
+ cram_byte_array_stop_decode_free at Base 1.14.12
+ cram_byte_array_stop_decode_init at Base 1.14.12
+ cram_byte_array_stop_encode at Base 1.14.12
+ cram_byte_array_stop_encode_free at Base 1.14.12
+ cram_byte_array_stop_encode_init at Base 1.14.12
+ cram_byte_array_stop_encode_store at Base 1.14.12
+ cram_close at Base 1.14.12
+ cram_codec_decoder2encoder at Base 1.14.12
+ cram_codec_to_id at Base 1.14.12
+ cram_compress_block at Base 1.14.12
+ cram_const_decode_byte at Base 1.14.13
+ cram_const_decode_free at Base 1.14.13
+ cram_const_decode_init at Base 1.14.13
+ cram_const_decode_int at Base 1.14.13
+ cram_const_decode_long at Base 1.14.13
+ cram_const_decode_size at Base 1.14.13
+ cram_const_encode at Base 1.14.13
+ cram_const_encode_init at Base 1.14.13
+ cram_const_encode_store at Base 1.14.13
+ cram_content_type2str at Base 1.14.12
+ cram_deallocate_encoder at Base 1.14.12
+ cram_decode_TD at Base 1.14.12
+ cram_decode_compression_header at Base 1.14.12
+ cram_decode_estimate_sizes at Base 1.14.12
+ cram_decode_slice at Base 1.14.12
+ cram_decode_slice_header at Base 1.14.12
+ cram_decode_slice_mt at Base 1.14.12
+ cram_decode_slice_thread at Base 1.14.12
+ cram_decoder_init at Base 1.14.12
+ cram_default_version at Base 1.14.12
+ cram_dependent_data_series at Base 1.14.12
+ cram_encode_compression_header at Base 1.14.12
+ cram_encode_container at Base 1.14.12
+ cram_encode_slice_header at Base 1.14.12
+ cram_encoder_get_fd at Base 1.14.13
+ cram_encoder_init at Base 1.14.12
+ cram_encoding2str at Base 1.14.12
+ cram_enque_compression_block at Base 1.14.12
+ cram_eof at Base 1.14.12
+ cram_external_decode_char at Base 1.14.12
+ cram_external_decode_free at Base 1.14.12
+ cram_external_decode_init at Base 1.14.12
+ cram_external_decode_int at Base 1.14.12
+ cram_external_decode_long at Base 1.14.12
+ cram_external_decode_size at Base 1.14.12
+ cram_external_encode_char at Base 1.14.12
+ cram_external_encode_free at Base 1.14.12
+ cram_external_encode_init at Base 1.14.12
+ cram_external_encode_int at Base 1.14.12
+ cram_external_encode_long at Base 1.14.12
+ cram_external_encode_sint at Base 1.14.12
+ cram_external_encode_slong at Base 1.14.12
+ cram_external_encode_store at Base 1.14.12
+ cram_external_get_block at Base 1.14.12
+ cram_flush at Base 1.14.12
+ cram_flush_container at Base 1.14.12
+ cram_flush_container_mt at Base 1.14.12
+ cram_flush_thread at Base 1.14.12
+ cram_free_block at Base 1.14.12
+ cram_free_compression_header at Base 1.14.12
+ cram_free_container at Base 1.14.12
+ cram_free_file_def at Base 1.14.12
+ cram_free_slice at Base 1.14.12
+ cram_free_slice_header at Base 1.14.12
+ cram_gamma_decode at Base 1.14.12
+ cram_gamma_decode_free at Base 1.14.12
+ cram_gamma_decode_init at Base 1.14.12
+ cram_get_bam_seq at Base 1.14.12
+ cram_get_ref at Base 1.14.12
+ cram_get_seq at Base 1.14.12
+ cram_huffman_decode_char0 at Base 1.14.12
+ cram_huffman_decode_char at Base 1.14.12
+ cram_huffman_decode_free at Base 1.14.12
+ cram_huffman_decode_init at Base 1.14.12
+ cram_huffman_decode_int0 at Base 1.14.12
+ cram_huffman_decode_int at Base 1.14.12
+ cram_huffman_decode_long0 at Base 1.14.12
+ cram_huffman_decode_long at Base 1.14.12
+ cram_huffman_decode_null at Base 1.14.12
+ cram_huffman_encode_char0 at Base 1.14.12
+ cram_huffman_encode_char at Base 1.14.12
+ cram_huffman_encode_free at Base 1.14.12
+ cram_huffman_encode_init at Base 1.14.12
+ cram_huffman_encode_int0 at Base 1.14.12
+ cram_huffman_encode_int at Base 1.14.12
+ cram_huffman_encode_long0 at Base 1.14.12
+ cram_huffman_encode_long at Base 1.14.12
+ cram_huffman_encode_store at Base 1.14.12
+ cram_index_build at Base 1.14.12
+ cram_index_free at Base 1.14.12
+ cram_index_load at Base 1.14.12
+ cram_index_load_via_callbacks at Base 1.14.12
+ cram_index_query at Base 1.14.12
+ cram_init_varint at Base 1.14.12
+ cram_io_allocate_output_buffer at Base 1.14.12
+ cram_io_close at Base 1.14.12
+ cram_io_deallocate_output_buffer at Base 1.14.12
+ cram_io_flush_output_buffer at Base 1.14.12
+ cram_io_input_buffer_fgets at Base 1.14.12
+ cram_io_input_buffer_read at Base 1.14.12
+ cram_io_input_buffer_seek at Base 1.14.12
+ cram_io_input_buffer_underflow at Base 1.14.12
+ cram_io_open at Base 1.14.12
+ cram_io_open_by_callbacks at Base 1.14.12
+ cram_io_openw_by_callbacks at Base 1.14.12
+ cram_io_output_buffer_putc at Base 1.14.12
+ cram_io_output_buffer_write at Base 1.14.12
+ cram_load_reference at Base 1.14.12
+ cram_mem_write_callback at Base 1.14.12
+ cram_new_block at Base 1.14.12
+ cram_new_compression_header at Base 1.14.12
+ cram_new_container at Base 1.14.12
+ cram_new_metrics at Base 1.14.12
+ cram_new_slice at Base 1.14.12
+ cram_nop_decode_reset at Base 1.14.12
+ cram_open at Base 1.14.12
+ cram_open_by_callbacks at Base 1.14.12
+ cram_openw_by_callbacks at Base 1.14.12
+ cram_process_work_package at Base 1.14.12
+ cram_put_bam_seq at Base 1.14.12
+ cram_read_SAM_hdr at Base 1.14.12
+ cram_read_block at Base 1.14.12
+ cram_read_container at Base 1.14.12
+ cram_read_file_def at Base 1.14.12
+ cram_read_slice at Base 1.14.12
+ cram_ref_decr at Base 1.14.12
+ cram_ref_incr at Base 1.14.12
+ cram_ref_load at Base 1.14.12
+ cram_seek at Base 1.14.12
+ cram_seek_to_refpos at Base 1.14.12
+ cram_set_option at Base 1.14.12
+ cram_set_voption at Base 1.14.12
+ cram_stats_add at Base 1.14.12
+ cram_stats_create at Base 1.14.12
+ cram_stats_del at Base 1.14.12
+ cram_stats_dump at Base 1.14.12
+ cram_stats_encoding at Base 1.14.12
+ cram_stats_free at Base 1.14.12
+ cram_stats_qual at Base 1.14.12
+ cram_subexp_decode at Base 1.14.12
+ cram_subexp_decode_free at Base 1.14.12
+ cram_subexp_decode_init at Base 1.14.12
+ cram_uncompress_block at Base 1.14.12
+ cram_update_curr_slice at Base 1.14.12
+ cram_varint_decode_free at Base 1.14.13
+ cram_varint_decode_init at Base 1.14.13
+ cram_varint_decode_int at Base 1.14.13
+ cram_varint_decode_long at Base 1.14.13
+ cram_varint_decode_sint at Base 1.14.13
+ cram_varint_decode_size at Base 1.14.13
+ cram_varint_decode_slong at Base 1.14.13
+ cram_varint_encode_free at Base 1.14.13
+ cram_varint_encode_init at Base 1.14.13
+ cram_varint_encode_int at Base 1.14.13
+ cram_varint_encode_long at Base 1.14.13
+ cram_varint_encode_sint at Base 1.14.13
+ cram_varint_encode_slong at Base 1.14.13
+ cram_varint_encode_store at Base 1.14.13
+ cram_varint_get_block at Base 1.14.13
+ cram_write_SAM_hdr at Base 1.14.12
+ cram_write_SAM_hdr at Base 1.14.12
+ cram_write_block at Base 1.14.12
+ cram_write_container at Base 1.14.12
+ cram_write_eof_block at Base 1.14.12
+ cram_write_file_def at Base 1.14.12
+ cram_xdelta_decode_block at Base 1.14.12
+ cram_xdelta_decode_char at Base 1.14.12
+ cram_xdelta_decode_free at Base 1.14.12
+ cram_xdelta_decode_init at Base 1.14.12
+ cram_xdelta_decode_int at Base 1.14.12
+ cram_xdelta_decode_long at Base 1.14.12
+ cram_xdelta_decode_size at Base 1.14.12
+ cram_xdelta_encode_char at Base 1.14.12
+ cram_xdelta_encode_flush at Base 1.14.12
+ cram_xdelta_encode_free at Base 1.14.12
+ cram_xdelta_encode_init at Base 1.14.12
+ cram_xdelta_encode_int at Base 1.14.12
+ cram_xdelta_encode_long at Base 1.14.12
+ cram_xdelta_encode_store at Base 1.14.12
+ cram_xdelta_get_block at Base 1.14.12
+ cram_xpack_decode_char at Base 1.14.12
+ cram_xpack_decode_free at Base 1.14.12
+ cram_xpack_decode_init at Base 1.14.12
+ cram_xpack_decode_int at Base 1.14.12
+ cram_xpack_decode_long at Base 1.14.12
+ cram_xpack_decode_size at Base 1.14.12
+ cram_xpack_encode_char at Base 1.14.12
+ cram_xpack_encode_flush at Base 1.14.12
+ cram_xpack_encode_free at Base 1.14.12
+ cram_xpack_encode_init at Base 1.14.12
+ cram_xpack_encode_int at Base 1.14.12
+ cram_xpack_encode_long at Base 1.14.12
+ cram_xpack_encode_store at Base 1.14.12
+ cram_xpack_get_block at Base 1.14.12
+ cram_xrle_decode_char at Base 1.14.12
+ cram_xrle_decode_free at Base 1.14.12
+ cram_xrle_decode_init at Base 1.14.12
+ cram_xrle_decode_int at Base 1.14.12
+ cram_xrle_decode_long at Base 1.14.12
+ cram_xrle_decode_size at Base 1.14.12
+ cram_xrle_encode_char at Base 1.14.12
+ cram_xrle_encode_flush at Base 1.14.12
+ cram_xrle_encode_free at Base 1.14.12
+ cram_xrle_encode_init at Base 1.14.12
+ cram_xrle_encode_int at Base 1.14.12
+ cram_xrle_encode_long at Base 1.14.12
+ cram_xrle_encode_store at Base 1.14.12
+ cram_xrle_get_block at Base 1.14.12
+ crc32_16bytes at Base 1.14.12
+ decode_sff_common_header at Base 1.14.12
+ decode_sff_read_header at Base 1.14.12
+ decorrelate1 at Base 1.14.12
+ decorrelate1dyn at Base 1.14.12
+ decorrelate2 at Base 1.14.12
+ decorrelate2dyn at Base 1.14.12
+ decorrelate4 at Base 1.14.12
+ delete_ztr at Base 1.14.12
+ determine_trace_type at Base 1.14.12
+ dstring_append at Base 1.14.12
+ dstring_append_char at Base 1.14.12
+ dstring_append_hex_encoded at Base 1.14.12
+ dstring_append_int at Base 1.14.12
+ dstring_appendf at Base 1.14.12
+ dstring_create at Base 1.14.12
+ dstring_create_with at Base 1.14.12
+ dstring_delete at Base 1.14.12
+ dstring_destroy at Base 1.14.12
+ dstring_dinsert at Base 1.14.12
+ dstring_dreplace at Base 1.14.12
+ dstring_empty at Base 1.14.12
+ dstring_escape_html at Base 1.14.12
+ dstring_find at Base 1.14.12
+ dstring_find_replace at Base 1.14.12
+ dstring_find_replace_all at Base 1.14.12
+ dstring_htmlise_links at Base 1.14.12
+ dstring_insert at Base 1.14.12
+ dstring_insertf at Base 1.14.12
+ dstring_length at Base 1.14.12
+ dstring_nappend at Base 1.14.12
+ dstring_ninsert at Base 1.14.12
+ dstring_nprepend at Base 1.14.12
+ dstring_perror at Base 1.14.12
+ dstring_prepend at Base 1.14.12
+ dstring_prependf at Base 1.14.12
+ dstring_refresh_length at Base 1.14.12
+ dstring_replace at Base 1.14.12
+ dstring_resize at Base 1.14.12
+ dstring_str at Base 1.14.12
+ dstring_to_html at Base 1.14.12
+ dstring_vinsertf at Base 1.14.12
+ dump_labels at Base 1.14.12
+ eflt_feature_ids at Base 1.14.12
+ encode_sff_common_header at Base 1.14.12
+ encode_sff_read_header at Base 1.14.12
+ errout at Base 1.14.12
+ exp2read at Base 1.14.12
+ exp_close at Base 1.14.12
+ exp_create_info at Base 1.14.12
+ exp_create_range at Base 1.14.12
+ exp_destroy_info at Base 1.14.12
+ exp_extract_range at Base 1.14.12
+ exp_fread_info at Base 1.14.12
+ exp_get_feature_index at Base 1.14.12
+ exp_get_int at Base 1.14.12
+ exp_get_rng at Base 1.14.12
+ exp_get_str at Base 1.14.12
+ exp_mfread_info at Base 1.14.12
+ exp_print_file at Base 1.14.12
+ exp_print_line at Base 1.14.12
+ exp_print_mfile at Base 1.14.12
+ exp_print_mline at Base 1.14.12
+ exp_print_seq at Base 1.14.12
+ exp_put_int at Base 1.14.12
+ exp_put_rng at Base 1.14.12
+ exp_put_str at Base 1.14.12
+ exp_read_info at Base 1.14.12
+ exp_set_entry at Base 1.14.12
+ expand_8to16 at Base 1.14.12
+ expand_8to32 at Base 1.14.12
+ expand_cache_path at Base 1.14.12
+ expcr_ at Base 1.14.12
+ expected_template_count at Base 1.14.12
+ exper_ at Base 1.14.12
+ expkil_ at Base 1.14.12
+ expopn_ at Base 1.14.12
+ expri_ at Base 1.14.12
+ exprr_ at Base 1.14.12
+ exprs_ at Base 1.14.12
+ exprsa_ at Base 1.14.12
+ expwi_ at Base 1.14.12
+ expwr_ at Base 1.14.12
+ expws_ at Base 1.14.12
+ expwsa_ at Base 1.14.12
+ f2cstr at Base 1.14.12
+ fcompress_file at Base 1.14.12
+ fdetermine_trace_type at Base 1.14.12
+ file_exists at Base 1.14.12
+ file_size at Base 1.14.12
+ find_file_url at Base 1.14.12
+ flen at Base 1.14.12
+ follow1 at Base 1.14.12
+ fopen_compressed at Base 1.14.12
+ fread_abi at Base 1.14.12
+ fread_alf at Base 1.14.12
+ fread_pln at Base 1.14.12
+ fread_reading at Base 1.14.12
+ fread_scf at Base 1.14.12
+ fread_ztr at Base 1.14.12
+ free_sff_common_header at Base 1.14.12
+ free_sff_read_data at Base 1.14.12
+ free_sff_read_header at Base 1.14.12
+ freopen_compressed at Base 1.14.12
+ fstrlen at Base 1.14.12
+ fwrite_abi at Base 1.14.12
+ fwrite_alf at Base 1.14.12
+ fwrite_pln at Base 1.14.12
+ fwrite_reading at Base 1.14.12
+ fwrite_scf at Base 1.14.12
+ fwrite_ztr at Base 1.14.12
+ generate_code_set at Base 1.14.12
+ generate_consensus at Base 1.14.12
+ getABIIndexEntryLW at Base 1.14.12
+ getABIIndexEntrySW at Base 1.14.12
+ getABIIndexOffset at Base 1.14.12
+ getABIString at Base 1.14.12
+ getABIint1 at Base 1.14.12
+ getABIint2 at Base 1.14.12
+ getABIint4 at Base 1.14.12
+ get_compression_method at Base 1.14.12
+ get_read_conf at Base 1.14.12
+ gzi_index_add_block at Base 1.14.12
+ gzi_index_dump at Base 1.14.12
+ gzi_index_free at Base 1.14.12
+ gzi_index_init at Base 1.14.12
+ gzi_index_load at Base 1.14.12
+ gzi_load at Base 1.14.12
+ hash64 at Base 1.14.12
+ hash at Base 1.14.12
+ huffman_codes_destroy at Base 1.14.12
+ huffman_codeset_destroy at Base 1.14.12
+ huffman_decode at Base 1.14.12
+ huffman_multi_decode at Base 1.14.12
+ huffman_multi_encode at Base 1.14.12
+ ichebcomp at Base 1.14.12
+ ichebuncomp at Base 1.14.12
+ illumina_bin at Base 1.14.12
+ illumina_bin_33 at Base 1.14.12
+ init_decode_tables at Base 1.14.12
+ int32_decode at Base 1.14.12
+ int32_encode at Base 1.14.12
+ int32_get_blk at Base 1.14.12
+ int32_put at Base 1.14.12
+ int_to_float at Base 1.14.12
+ iolib_crc32 at Base 1.14.12
+ iolib_get_exp_path at Base 1.14.12
+ iolib_get_trace_path at Base 1.14.12
+ iolib_set_exp_path at Base 1.14.12
+ iolib_set_trace_path at Base 1.14.12
+ is_directory at Base 1.14.12
+ is_file at Base 1.14.12
+ is_scf at Base 1.14.12
+ itf8_bytes at Base 1.14.12
+ itf8_decode_crc at Base 1.14.12
+ itf8_put_blk at Base 1.14.12
+ itf8_size at Base 1.14.12
+ le_read_int_1 at Base 1.14.12
+ le_read_int_2 at Base 1.14.12
+ le_read_int_4 at Base 1.14.12
+ le_read_int_8 at Base 1.14.12
+ le_write_int_1 at Base 1.14.12
+ le_write_int_2 at Base 1.14.12
+ le_write_int_4 at Base 1.14.12
+ le_write_int_8 at Base 1.14.12
+ load_ref_portion at Base 1.14.12
+ log2_data at Base 1.14.12
+ lossy_read_names at Base 1.14.12
+ ltf8_bytes at Base 1.14.12
+ ltf8_decode at Base 1.14.12
+ ltf8_decode_crc at Base 1.14.12
+ ltf8_put_blk at Base 1.14.12
+ memgunzip at Base 1.14.12
+ memgzip at Base 1.14.12
+ mfascii at Base 1.14.12
+ mfclose at Base 1.14.12
+ mfcreate at Base 1.14.12
+ mfcreate_from at Base 1.14.12
+ mfdestroy at Base 1.14.12
+ mfdetach at Base 1.14.12
+ mfeof at Base 1.14.12
+ mfflush at Base 1.14.12
+ mfgetc at Base 1.14.12
+ mfgets at Base 1.14.12
+ mfmmap at Base 1.14.12
+ mfopen at Base 1.14.12
+ mfprintf at Base 1.14.12
+ mfread at Base 1.14.12
+ mfread_abi at Base 1.14.12
+ mfread_alf at Base 1.14.12
+ mfread_pln at Base 1.14.12
+ mfread_reading at Base 1.14.12
+ mfread_scf at Base 1.14.12
+ mfread_sff at Base 1.14.12
+ mfread_ztr at Base 1.14.12
+ mfrecreate at Base 1.14.12
+ mfreopen at Base 1.14.12
+ mfseek at Base 1.14.12
+ mfsteal at Base 1.14.12
+ mftell at Base 1.14.12
+ mftruncate at Base 1.14.12
+ mfwrite at Base 1.14.12
+ mfwrite_abi at Base 1.14.12
+ mfwrite_alf at Base 1.14.12
+ mfwrite_pln at Base 1.14.12
+ mfwrite_reading at Base 1.14.12
+ mfwrite_scf at Base 1.14.12
+ mfwrite_ztr at Base 1.14.12
+ mkdir_prefix at Base 1.14.12
+ mrewind at Base 1.14.12
+ mstderr at Base 1.14.12
+ mstdin at Base 1.14.12
+ mstdout at Base 1.14.12
+ mungetc at Base 1.14.12
+ myfind at Base 1.14.12
+ mystrtok at Base 1.14.12
+ new_ztr at Base 1.14.12
+ next_symbol at Base 1.14.12
+ open_exp_file at Base 1.14.12
+ open_exp_mfile at Base 1.14.12
+ open_fofn at Base 1.14.12
+ open_path_file at Base 1.14.12
+ open_path_mfile at Base 1.14.12
+ open_trace_file at Base 1.14.12
+ open_trace_mfile at Base 1.14.12
+ opos2str at Base 1.14.12
+ pack_trace_suffix at Base 1.14.12
+ paranoid_fclose at Base 1.14.12
+ partial_decode_ztr at Base 1.14.12
+ pool_alloc at Base 1.14.12
+ pool_create at Base 1.14.12
+ pool_destroy at Base 1.14.12
+ pool_free at Base 1.14.12
+ qshift at Base 1.14.12
+ read2exp at Base 1.14.12
+ read2scf at Base 1.14.12
+ read2ztr at Base 1.14.12
+ read_abi at Base 1.14.12
+ read_alf at Base 1.14.12
+ read_allocate at Base 1.14.12
+ read_deallocate at Base 1.14.12
+ read_dup at Base 1.14.12
+ read_experiment_redirect at Base 1.14.12
+ read_fofn at Base 1.14.12
+ read_pln at Base 1.14.12
+ read_reading at Base 1.14.12
+ read_scf at Base 1.14.12
+ read_scf_base at Base 1.14.12
+ read_scf_bases3 at Base 1.14.12
+ read_scf_bases at Base 1.14.12
+ read_scf_comment at Base 1.14.12
+ read_scf_header at Base 1.14.12
+ read_scf_sample1 at Base 1.14.12
+ read_scf_sample2 at Base 1.14.12
+ read_scf_samples1 at Base 1.14.12
+ read_scf_samples2 at Base 1.14.12
+ read_scf_samples31 at Base 1.14.12
+ read_scf_samples32 at Base 1.14.12
+ read_sections at Base 1.14.12
+ read_sff_common_header at Base 1.14.12
+ read_sff_read_data at Base 1.14.12
+ read_sff_read_header at Base 1.14.12
+ read_update_base_positions at Base 1.14.12
+ read_update_confidence_values at Base 1.14.12
+ recorrelate1 at Base 1.14.12
+ recorrelate2 at Base 1.14.12
+ recorrelate4 at Base 1.14.12
+ refs2id at Base 1.14.12
+ refs_free at Base 1.14.12
+ refs_load_fai at Base 1.14.12
+ remove_extension at Base 1.14.12
+ remove_file at Base 1.14.12
+ reset_metrics at Base 1.14.12
+ restore_codes at Base 1.14.12
+ restore_codes_single at Base 1.14.12
+ rle at Base 1.14.12
+ safe_itf8_put at Base 1.14.12
+ safe_ltf8_put at Base 1.14.12
+ sam_hdr_PG_ID at Base 1.14.12
+ sam_hdr_add at Base 1.14.12
+ sam_hdr_add_PG at Base 1.14.12
+ sam_hdr_add_lines at Base 1.14.12
+ sam_hdr_decr_ref at Base 1.14.12
+ sam_hdr_dump at Base 1.14.12
+ sam_hdr_dup at Base 1.14.12
+ sam_hdr_find at Base 1.14.12
+ sam_hdr_find_key at Base 1.14.12
+ sam_hdr_find_line at Base 1.14.12
+ sam_hdr_find_rg at Base 1.14.12
+ sam_hdr_free at Base 1.14.12
+ sam_hdr_incr_ref at Base 1.14.12
+ sam_hdr_length at Base 1.14.12
+ sam_hdr_link_pg at Base 1.14.12
+ sam_hdr_name2ref at Base 1.14.12
+ sam_hdr_new at Base 1.14.12
+ sam_hdr_parse at Base 1.14.12
+ sam_hdr_rebuild at Base 1.14.12
+ sam_hdr_sort_order at Base 1.14.12
+ sam_hdr_str at Base 1.14.12
+ sam_hdr_update at Base 1.14.12
+ sam_hdr_vadd at Base 1.14.12
+ scf2read at Base 1.14.12
+ scf_allocate at Base 1.14.12
+ scf_deallocate at Base 1.14.12
+ scf_delta_samples1 at Base 1.14.12
+ scf_delta_samples2 at Base 1.14.12
+ scf_version_float2str at Base 1.14.12
+ scf_version_str2float at Base 1.14.12
+ scram_close at Base 1.14.12
+ scram_get_header at Base 1.14.12
+ scram_get_refs at Base 1.14.12
+ scram_get_seq at Base 1.14.12
+ scram_init at Base 1.14.12
+ scram_input_bam_block at Base 1.14.12
+ scram_line at Base 1.14.12
+ scram_next_seq at Base 1.14.12
+ scram_open at Base 1.14.12
+ scram_open_cram_via_callbacks at Base 1.14.12
+ scram_put_seq at Base 1.14.12
+ scram_set_header at Base 1.14.12
+ scram_set_option at Base 1.14.12
+ scram_set_refs at Base 1.14.12
+ scram_write_header at Base 1.14.12
+ set_compression_method at Base 1.14.12
+ set_scf_version at Base 1.14.12
+ shrink_16to8 at Base 1.14.12
+ shrink_32to8 at Base 1.14.12
+ srf_construct_cont_hdr at Base 1.14.12
+ srf_construct_trace_body at Base 1.14.12
+ srf_construct_trace_hdr at Base 1.14.12
+ srf_create at Base 1.14.12
+ srf_destroy at Base 1.14.12
+ srf_destroy_cont_hdr at Base 1.14.12
+ srf_destroy_trace_body at Base 1.14.12
+ srf_destroy_trace_hdr at Base 1.14.12
+ srf_find_trace at Base 1.14.12
+ srf_index_add_cont_hdr at Base 1.14.12
+ srf_index_add_trace_body at Base 1.14.12
+ srf_index_add_trace_hdr at Base 1.14.12
+ srf_index_create at Base 1.14.12
+ srf_index_destroy at Base 1.14.12
+ srf_index_stats at Base 1.14.12
+ srf_index_write at Base 1.14.12
+ srf_next_block_details at Base 1.14.12
+ srf_next_block_type at Base 1.14.12
+ srf_next_trace at Base 1.14.12
+ srf_next_ztr at Base 1.14.12
+ srf_next_ztr_flags at Base 1.14.12
+ srf_open at Base 1.14.12
+ srf_read_cont_hdr at Base 1.14.12
+ srf_read_index_hdr at Base 1.14.12
+ srf_read_pstring at Base 1.14.12
+ srf_read_trace_body at Base 1.14.12
+ srf_read_trace_hdr at Base 1.14.12
+ srf_read_uint32 at Base 1.14.12
+ srf_read_uint64 at Base 1.14.12
+ srf_read_xml at Base 1.14.12
+ srf_write_cont_hdr at Base 1.14.12
+ srf_write_index_hdr at Base 1.14.12
+ srf_write_pstring at Base 1.14.12
+ srf_write_pstringb at Base 1.14.12
+ srf_write_trace_body at Base 1.14.12
+ srf_write_trace_hdr at Base 1.14.12
+ srf_write_uint32 at Base 1.14.12
+ srf_write_uint64 at Base 1.14.12
+ srf_write_xml at Base 1.14.12
+ sthuff at Base 1.14.12
+ store_bytes at Base 1.14.12
+ store_codes at Base 1.14.12
+ store_codes_single at Base 1.14.12
+ str2conf at Base 1.14.12
+ str2opos at Base 1.14.12
+ str_tolower at Base 1.14.12
+ str_toupper at Base 1.14.12
+ string_alloc at Base 1.14.12
+ string_dup at Base 1.14.12
+ string_ndup at Base 1.14.12
+ string_pool_create at Base 1.14.12
+ string_pool_destroy at Base 1.14.12
+ stringify_argv at Base 1.14.12
+ t_pool_delete_result at Base 1.14.12
+ t_pool_destroy at Base 1.14.12
+ t_pool_dispatch2 at Base 1.14.12
+ t_pool_dispatch at Base 1.14.12
+ t_pool_flush at Base 1.14.12
+ t_pool_init at Base 1.14.12
+ t_pool_next_result at Base 1.14.12
+ t_pool_next_result_wait at Base 1.14.12
+ t_pool_results_queue_empty at Base 1.14.12
+ t_pool_results_queue_len at Base 1.14.12
+ t_pool_results_queue_sz at Base 1.14.12
+ t_results_queue_destroy at Base 1.14.12
+ t_results_queue_init at Base 1.14.12
+ tokenise_search_path at Base 1.14.12
+ trace_type_int2str at Base 1.14.12
+ trace_type_str2int at Base 1.14.12
+ trace_type_str at Base 1.14.12
+ tshift at Base 1.14.12
+ uncompress_chunk at Base 1.14.12
+ uncompress_ztr at Base 1.14.12
+ unfollow1 at Base 1.14.12
+ unlog2_data at Base 1.14.12
+ unqshift at Base 1.14.12
+ unrle at Base 1.14.12
+ unsthuff at Base 1.14.12
+ untshift at Base 1.14.12
+ unxrle2 at Base 1.14.12
+ unxrle at Base 1.14.12
+ vflen at Base 1.14.12
+ write_abi at Base 1.14.12
+ write_alf at Base 1.14.12
+ write_pln at Base 1.14.12
+ write_reading at Base 1.14.12
+ write_scf at Base 1.14.12
+ write_scf_base at Base 1.14.12
+ write_scf_bases3 at Base 1.14.12
+ write_scf_bases at Base 1.14.12
+ write_scf_comment at Base 1.14.12
+ write_scf_header at Base 1.14.12
+ write_scf_sample1 at Base 1.14.12
+ write_scf_sample2 at Base 1.14.12
+ write_scf_samples1 at Base 1.14.12
+ write_scf_samples2 at Base 1.14.12
+ write_scf_samples31 at Base 1.14.12
+ write_scf_samples32 at Base 1.14.12
+ xcalloc at Base 1.14.12
+ xfree at Base 1.14.12
+ xmalloc at Base 1.14.12
+ xrealloc at Base 1.14.12
+ xrle2 at Base 1.14.12
+ xrle at Base 1.14.12
+ zfclose at Base 1.14.12
+ zfeof at Base 1.14.12
+ zfgets at Base 1.14.12
+ zfopen at Base 1.14.12
+ zfpeek at Base 1.14.12
+ zfputs at Base 1.14.12
+ zfseeko at Base 1.14.12
+ zftello at Base 1.14.12
+ zlib_dehuff at Base 1.14.12
+ zlib_huff at Base 1.14.12
+ zlib_mem_inflate at Base 1.14.12
+ ztr2read at Base 1.14.12
+ ztr_add_hcode at Base 1.14.12
+ ztr_add_text at Base 1.14.12
+ ztr_dup at Base 1.14.12
+ ztr_find_chunks at Base 1.14.12
+ ztr_find_hcode at Base 1.14.12
+ ztr_find_hcode_chunk at Base 1.14.12
+ ztr_lookup_mdata_value at Base 1.14.12
+ ztr_new_chunk at Base 1.14.12
+ ztr_process_text at Base 1.14.12
+ ztr_read_chunk_hdr at Base 1.14.12
+ ztr_read_header at Base 1.14.12
+ ztr_store_hcodes at Base 1.14.12
diff -Nru staden-io-lib-1.15.0/debian/rules staden-io-lib-1.15.0/debian/rules
--- staden-io-lib-1.15.0/debian/rules 2024-01-20 19:35:25.000000000 +0000
+++ staden-io-lib-1.15.0/debian/rules 2024-02-05 16:18:04.000000000 +0000
@@ -26,6 +26,7 @@
#
# Call d-shlibmove to comply with library packaging guide
d-shlibmove --commit \
+ --t64 \
--multiarch \
--devunversioned \
--exclude-la \
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