[Debian-med-packaging] Bug#1062891: seqtools: NMU diff for 64-bit time_t transition

[Benjamin Drung]

Source: seqtools
Dear maintainer,

Please find attached a final version of this patch for the time_t
transition.  This patch is being uploaded to unstable.

Note that this adds a versioned build-dependency on dpkg-dev, to guard
against accidental backports with a wrong ABI.

Thanks!


-- System Information:
Debian Release: trixie/sid
  APT prefers unstable
  APT policy: (500, 'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)

Kernel: Linux 6.5.0-21-generic (SMP w/16 CPU threads; PREEMPT)
Kernel taint flags: TAINT_PROPRIETARY_MODULE, TAINT_OOT_MODULE, TAINT_UNSIGNED_MODULE
Locale: LANG=C, LC_CTYPE=C.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: unable to detect
-------------- next part --------------
diff -Nru seqtools-4.44.1+dfsg/debian/changelog seqtools-4.44.1+dfsg/debian/changelog
--- seqtools-4.44.1+dfsg/debian/changelog	2021-11-17 07:47:38.000000000 +0000
+++ seqtools-4.44.1+dfsg/debian/changelog	2024-02-29 15:46:53.000000000 +0000
@@ -1,3 +1,10 @@
+seqtools (4.44.1+dfsg-7.1) unstable; urgency=medium
+
+  * Non-maintainer upload.
+  * Rename libraries for 64-bit time_t transition.  Closes: #1062891
+
+ -- Benjamin Drung <bdrung at debian.org>  Thu, 29 Feb 2024 15:46:53 +0000
+
 seqtools (4.44.1+dfsg-7) unstable; urgency=medium
 
   * Versioned Build-Depends: d-shlibs (>= 0.80)
diff -Nru seqtools-4.44.1+dfsg/debian/control seqtools-4.44.1+dfsg/debian/control
--- seqtools-4.44.1+dfsg/debian/control	2021-11-17 07:47:38.000000000 +0000
+++ seqtools-4.44.1+dfsg/debian/control	2024-02-29 15:46:53.000000000 +0000
@@ -3,19 +3,22 @@
 Uploaders: Andreas Tille <tille at debian.org>
 Section: science
 Priority: optional
-Build-Depends: debhelper-compat (= 13),
+Build-Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13),
                libgtk2.0-dev,
                libsqlite3-dev,
                libcurl4-openssl-dev | libcurl4-dev,
                libjsoncpp-dev,
-               d-shlibs
+               d-shlibs (>= 0.106),
 Standards-Version: 4.6.0
 Vcs-Browser: https://salsa.debian.org/med-team/seqtools
 Vcs-Git: https://salsa.debian.org/med-team/seqtools.git
 Homepage: https://www.sanger.ac.uk/science/tools/seqtools
 Rules-Requires-Root: no
 
-Package: libgbtools0
+Package: libgbtools0t64
+Provides: ${t64:Provides}
+Replaces: libgbtools0
+Conflicts: libgbtools0 (<< ${source:Version})
 Architecture: any
 Multi-Arch: same
 Section: libs
@@ -31,7 +34,7 @@
 Architecture: any
 Multi-Arch: same
 Section: libdevel
-Depends: libgbtools0 (= ${binary:Version}),
+Depends: libgbtools0t64 (= ${binary:Version}),
          ${devlibs:Depends},
          ${misc:Depends}
 Description: library for visualising sequence alignments (devel)
diff -Nru seqtools-4.44.1+dfsg/debian/libgbtools0t64.lintian-overrides seqtools-4.44.1+dfsg/debian/libgbtools0t64.lintian-overrides
--- seqtools-4.44.1+dfsg/debian/libgbtools0t64.lintian-overrides	1970-01-01 00:00:00.000000000 +0000
+++ seqtools-4.44.1+dfsg/debian/libgbtools0t64.lintian-overrides	2024-02-29 15:46:12.000000000 +0000
@@ -0,0 +1 @@
+libgbtools0t64: package-name-doesnt-match-sonames libgbtools0
diff -Nru seqtools-4.44.1+dfsg/debian/rules seqtools-4.44.1+dfsg/debian/rules
--- seqtools-4.44.1+dfsg/debian/rules	2021-11-17 07:47:38.000000000 +0000
+++ seqtools-4.44.1+dfsg/debian/rules	2024-02-29 15:46:51.000000000 +0000
@@ -11,6 +11,7 @@
 override_dh_install:
 	dh_install
 	d-shlibmove --commit \
+		    --t64 \
 		    --multiarch \
 		    --devunversioned \
 		    --exclude-la \