[Debian-med-packaging] Bug#1062238: libbpp-raa: NMU diff for 64-bit time_t transition
Steve Langasek
vorlon at debian.org
Wed Jan 31 20:05:28 GMT 2024
Source: libbpp-raa
Version: 2.4.1-7
Severity: serious
Tags: patch pending
Justification: library ABI skew on upgrade
User: debian-arm at lists.debian.org
Usertags: time-t
Dear maintainer,
As part of the 64-bit time_t transition required to support 32-bit
architectures in 2038 and beyond
(https://wiki.debian.org/ReleaseGoals/64bit-time), we have identified
libbpp-raa as a source package shipping runtime libraries whose ABI
either is affected by the change in size of time_t, or could not be
analyzed via abi-compliance-checker (and therefore to be on the safe
side we assume is affected).
To ensure that inconsistent combinations of libraries with their
reverse-dependencies are never installed together, it is necessary to
have a library transition, which is most easily done by renaming the
runtime library package.
Since turning on 64-bit time_t is being handled centrally through a change
to the default dpkg-buildflags (https://bugs.debian.org/1037136), it is
important that libraries affected by this ABI change all be uploaded close
together in time. Therefore I have prepared a 0-day NMU for libbpp-raa
which will initially be uploaded to experimental if possible, then to
unstable after packages have cleared binary NEW.
Please find the patch for this NMU attached.
If you have any concerns about this patch, please reach out ASAP. Although
this package will be uploaded to experimental immediately, there will be a
period of several days before we begin uploads to unstable; so if information
becomes available that your package should not be included in the transition,
there is time for us to amend the planned uploads.
-- System Information:
Debian Release: trixie/sid
APT prefers unstable
APT policy: (500, 'unstable'), (500, 'testing'), (1, 'experimental')
Architecture: amd64 (x86_64)
Kernel: Linux 6.5.0-14-generic (SMP w/12 CPU threads; PREEMPT)
Kernel taint flags: TAINT_PROPRIETARY_MODULE, TAINT_OOT_MODULE
Locale: LANG=C, LC_CTYPE=C.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
-------------- next part --------------
diff -Nru libbpp-raa-2.4.1/debian/changelog libbpp-raa-2.4.1/debian/changelog
--- libbpp-raa-2.4.1/debian/changelog 2022-11-26 07:06:31.000000000 +0000
+++ libbpp-raa-2.4.1/debian/changelog 2024-01-31 20:05:05.000000000 +0000
@@ -1,3 +1,10 @@
+libbpp-raa (2.4.1-7.1) experimental; urgency=medium
+
+ * Non-maintainer upload.
+ * Rename libraries for 64-bit time_t transition.
+
+ -- Steve Langasek <vorlon at debian.org> Wed, 31 Jan 2024 20:05:05 +0000
+
libbpp-raa (2.4.1-7) unstable; urgency=medium
* Fix watch file
diff -Nru libbpp-raa-2.4.1/debian/control libbpp-raa-2.4.1/debian/control
--- libbpp-raa-2.4.1/debian/control 2022-11-26 07:06:31.000000000 +0000
+++ libbpp-raa-2.4.1/debian/control 2024-01-31 20:05:05.000000000 +0000
@@ -18,7 +18,7 @@
Package: libbpp-raa-dev
Architecture: any
Section: libdevel
-Depends: libbpp-raa4 (= ${binary:Version}),
+Depends: libbpp-raa4t64 (= ${binary:Version}),
${misc:Depends},
libbpp-seq-dev
Multi-Arch: same
@@ -29,7 +29,10 @@
.
This package contains header files and static library.
-Package: libbpp-raa4
+Package: libbpp-raa4t64
+Provides: ${t64:Provides}
+Replaces: libbpp-raa4
+Breaks: libbpp-raa4 (<< ${source:Version})
Architecture: any
Section: libs
Depends: ${shlibs:Depends},
diff -Nru libbpp-raa-2.4.1/debian/libbpp-raa4.symbols.amd64 libbpp-raa-2.4.1/debian/libbpp-raa4.symbols.amd64
--- libbpp-raa-2.4.1/debian/libbpp-raa4.symbols.amd64 2022-11-26 07:06:31.000000000 +0000
+++ libbpp-raa-2.4.1/debian/libbpp-raa4.symbols.amd64 1970-01-01 00:00:00.000000000 +0000
@@ -1,186 +0,0 @@
-libbpp-raa.so.4 libbpp-raa4 #MINVER#
- _ZN3bpp14RaaSpeciesTree10firstChildEi at Base 2.4.1
- _ZN3bpp14RaaSpeciesTree11nextSynonymEi at Base 2.4.1
- _ZN3bpp14RaaSpeciesTree5countEi at Base 2.4.1
- _ZN3bpp14RaaSpeciesTree5labelB5cxx11Ei at Base 2.4.1
- _ZN3bpp14RaaSpeciesTree6getTidEi at Base 2.4.1
- _ZN3bpp14RaaSpeciesTree6parentEi at Base 2.4.1
- _ZN3bpp14RaaSpeciesTree7getNameB5cxx11Ei at Base 2.4.1
- _ZN3bpp14RaaSpeciesTree7isChildEii at Base 2.4.1
- _ZN3bpp14RaaSpeciesTree8findNodeERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEb at Base 2.4.1
- _ZN3bpp14RaaSpeciesTree8findNodeEi at Base 2.4.1
- _ZN3bpp14RaaSpeciesTree8getMajorEi at Base 2.4.1
- _ZN3bpp14RaaSpeciesTree9nextChildEii at Base 2.4.1
- _ZN3bpp16BadCharExceptionD0Ev at Base 2.4.1
- _ZN3bpp16BadCharExceptionD1Ev at Base 2.4.1
- _ZN3bpp16BadCharExceptionD2Ev at Base 2.4.1
- _ZN3bpp17AlphabetExceptionD0Ev at Base 2.4.1
- _ZN3bpp17AlphabetExceptionD1Ev at Base 2.4.1
- _ZN3bpp17AlphabetExceptionD2Ev at Base 2.4.1
- _ZN3bpp3RAA10deleteListEPNS_7RaaListE at Base 2.4.1
- _ZN3bpp3RAA10getSeqFragERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiiRS6_ at Base 2.4.1
- _ZN3bpp3RAA10getSeqFragEiiiRNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 2.4.1
- _ZN3bpp3RAA11getSeq_bothERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEii at Base 2.4.1
- _ZN3bpp3RAA12openDatabaseERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPFPcPvESA_ at Base 2.4.1
- _ZN3bpp3RAA12processQueryERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES8_ at Base 2.4.1
- _ZN3bpp3RAA12translateCDSERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 2.4.1
- _ZN3bpp3RAA12translateCDSEi at Base 2.4.1
- _ZN3bpp3RAA13closeDatabaseEv at Base 2.4.1
- _ZN3bpp3RAA13getAttributesERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 2.4.1
- _ZN3bpp3RAA13getAttributesEi at Base 2.4.1
- _ZN3bpp3RAA14getNextFeatureEPv at Base 2.4.1
- _ZN3bpp3RAA14keywordPatternERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 2.4.1
- _ZN3bpp3RAA14knownDatabasesERSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EESA_ at Base 2.4.1
- _ZN3bpp3RAA15createEmptyListERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES8_ at Base 2.4.1
- _ZN3bpp3RAA15freeSpeciesTreeEPNS_14RaaSpeciesTreeE at Base 2.4.1
- _ZN3bpp3RAA15loadSpeciesTreeEb at Base 2.4.1
- _ZN3bpp3RAA16getDirectFeatureERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES8_S8_S8_ at Base 2.4.1
- _ZN3bpp3RAA16getNextAnnotLineB5cxx11Ev at Base 2.4.1
- _ZN3bpp3RAA17getFirstAnnotLineB5cxx11Ei at Base 2.4.1
- _ZN3bpp3RAA18listAllFeatureKeysB5cxx11Ev at Base 2.4.1
- _ZN3bpp3RAA18translateInitCodonEi at Base 2.4.1
- _ZN3bpp3RAA19nextMatchingKeywordERNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 2.4.1
- _ZN3bpp3RAA20prepareGetAnyFeatureEiRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 2.4.1
- _ZN3bpp3RAA21getAnnotLineAtAddressB5cxx11ENS_10RaaAddressE at Base 2.4.1
- _ZN3bpp3RAA21listDirectFeatureKeysB5cxx11Ev at Base 2.4.1
- _ZN3bpp3RAA22getCurrentAnnotAddressEv at Base 2.4.1
- _ZN3bpp3RAA22interruptGetAnyFeatureEPv at Base 2.4.1
- _ZN3bpp3RAA6getSeqERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEi at Base 2.4.1
- _ZN3bpp3RAA6getSeqEii at Base 2.4.1
- _ZN3bpp3RAAC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiS8_ at Base 2.4.1
- _ZN3bpp3RAAC1EiRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 2.4.1
- _ZN3bpp3RAAC2ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiS8_ at Base 2.4.1
- _ZN3bpp3RAAC2EiRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 2.4.1
- _ZN3bpp3RAAD1Ev at Base 2.4.1
- _ZN3bpp3RAAD2Ev at Base 2.4.1
- _ZN3bpp7RaaList10addElementEi at Base 2.4.1
- _ZN3bpp7RaaList11nextElementEv at Base 2.4.1
- _ZN3bpp7RaaList11parentsOnlyEv at Base 2.4.1
- _ZN3bpp7RaaList12LIST_SPECIESB5cxx11E at Base 2.4.1
- _ZN3bpp7RaaList12firstElementEv at Base 2.4.1
- _ZN3bpp7RaaList12modifyByDateERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES8_ at Base 2.4.1
- _ZN3bpp7RaaList12residueCountB5cxx11Ev at Base 2.4.1
- _ZN3bpp7RaaList13LIST_KEYWORDSB5cxx11E at Base 2.4.1
- _ZN3bpp7RaaList13removeElementEi at Base 2.4.1
- _ZN3bpp7RaaList14LIST_SEQUENCESB5cxx11E at Base 2.4.1
- _ZN3bpp7RaaList14modifyByLengthERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES8_ at Base 2.4.1
- _ZN3bpp7RaaList7setFromEi at Base 2.4.1
- _ZN3bpp7RaaList8getCountEv at Base 2.4.1
- _ZN3bpp7RaaList8isInListEi at Base 2.4.1
- _ZN3bpp7RaaList8zeroListEv at Base 2.4.1
- _ZN3bpp7RaaListC1Ev at Base 2.4.1
- _ZN3bpp7RaaListC2Ev at Base 2.4.1
- _ZNK3bpp17AlphabetException11getAlphabetEv at Base 2.4.1
- _ZNSt12_Vector_baseINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED1Ev at Base 2.4.1
- _ZNSt12_Vector_baseINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED2Ev at Base 2.4.1
- _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_default_appendEm at Base 2.4.1
- _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_ at Base 2.4.1
- _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED1Ev at Base 2.4.1
- _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED2Ev at Base 2.4.1
- _ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEC1IS3_EEPKcRKS3_ at Base 2.4.1
- _ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEC2IS3_EEPKcRKS3_ at Base 2.4.1
- _ZSt18__do_uninit_fill_nIPNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEmS5_ET_S7_T0_RKT1_ at Base 2.4.1
- _ZTINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 2.4.1
- _ZTSNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 2.4.1
- ajout_reponse at Base 2.4.1
- aminoacids at Base 2.4.1
- atoi_u at Base 2.4.1
- calc_codon_number at Base 2.4.1
- chg_acnuc at Base 2.4.1
- clear_reponse at Base 2.4.1
- close_sock_gz_r at Base 2.4.1
- codaa at Base 2.4.1
- compact at Base 2.4.1
- compch at Base 2.4.1
- complementer_base at Base 2.4.1
- complementer_seq at Base 2.4.1
- genetic_code at Base 2.4.1
- get_acnuc_gc_number at Base 2.4.1
- get_code_descr at Base 2.4.1
- get_ncbi_gc_number at Base 2.4.1
- gets_no_echo at Base 2.4.1
- init_codon_to_aa at Base 2.4.1
- initreponse at Base 2.4.1
- majuscules at Base 2.4.1
- mycalloc at Base 2.4.1
- notrail2 at Base 2.4.1
- padtosize at Base 2.4.1
- parse at Base 2.4.1
- prepare_sock_gz_r at Base 2.4.1
- prepch at Base 2.4.1
- print_raa_long at Base 2.4.1
- raa_1_coordinate_set at Base 2.4.1
- raa_MD5String at Base 2.4.1
- raa_acnucclose at Base 2.4.1
- raa_acnucopen at Base 2.4.1
- raa_acnucopen_alt at Base 2.4.1
- raa_alllistranks at Base 2.4.1
- raa_bcount at Base 2.4.1
- raa_bit0 at Base 2.4.1
- raa_bit1 at Base 2.4.1
- raa_btest at Base 2.4.1
- raa_copylist at Base 2.4.1
- raa_countfilles at Base 2.4.1
- raa_decode_address at Base 2.4.1
- raa_error_mess_proc at Base 2.4.1
- raa_fcode at Base 2.4.1
- raa_followshrt2 at Base 2.4.1
- raa_get_taxon_info at Base 2.4.1
- raa_getattributes at Base 2.4.1
- raa_getemptylist at Base 2.4.1
- raa_getlistrank at Base 2.4.1
- raa_getliststate at Base 2.4.1
- raa_gfrag at Base 2.4.1
- raa_ghelp at Base 2.4.1
- raa_iknum at Base 2.4.1
- raa_isenum at Base 2.4.1
- raa_knowndbs at Base 2.4.1
- raa_loadtaxonomy at Base 2.4.1
- raa_modifylist at Base 2.4.1
- raa_next_annots at Base 2.4.1
- raa_nexteltinlist at Base 2.4.1
- raa_nexteltinlist_annots at Base 2.4.1
- raa_nextmatchkey at Base 2.4.1
- raa_open_socket at Base 2.4.1
- raa_opendb at Base 2.4.1
- raa_opendb_pw at Base 2.4.1
- raa_prep_acnuc_query at Base 2.4.1
- raa_prep_coordinates at Base 2.4.1
- raa_proc_query at Base 2.4.1
- raa_read_annots at Base 2.4.1
- raa_read_first_rec at Base 2.4.1
- raa_readacc at Base 2.4.1
- raa_readext at Base 2.4.1
- raa_readkey at Base 2.4.1
- raa_readlng at Base 2.4.1
- raa_readloc at Base 2.4.1
- raa_readshrt at Base 2.4.1
- raa_readsmj at Base 2.4.1
- raa_readspec at Base 2.4.1
- raa_readsub at Base 2.4.1
- raa_readsub_pannots at Base 2.4.1
- raa_releaselist at Base 2.4.1
- raa_residuecount at Base 2.4.1
- raa_savelist at Base 2.4.1
- raa_seq_to_annots at Base 2.4.1
- raa_seqrank_attributes at Base 2.4.1
- raa_setlistname at Base 2.4.1
- raa_setliststate at Base 2.4.1
- raa_short_descr at Base 2.4.1
- raa_translate_cds at Base 2.4.1
- raa_translate_init_codon at Base 2.4.1
- raa_zerolist at Base 2.4.1
- read_sock at Base 2.4.1
- read_sock_timeout at Base 2.4.1
- scan_raa_long at Base 2.4.1
- sock_flush at Base 2.4.1
- sock_fputs at Base 2.4.1
- sock_printf at Base 2.4.1
- strcmptrail at Base 2.4.1
- totcodes at Base 2.4.1
- trim_key at Base 2.4.1
- unprotect_quotes at Base 2.4.1
- val at Base 2.4.1
- z_getc at Base 2.4.1
- z_gets at Base 2.4.1
- z_read_sock at Base 2.4.1
diff -Nru libbpp-raa-2.4.1/debian/libbpp-raa4t64.amd64 libbpp-raa-2.4.1/debian/libbpp-raa4t64.amd64
--- libbpp-raa-2.4.1/debian/libbpp-raa4t64.amd64 1970-01-01 00:00:00.000000000 +0000
+++ libbpp-raa-2.4.1/debian/libbpp-raa4t64.amd64 2022-11-26 07:06:31.000000000 +0000
@@ -0,0 +1,186 @@
+libbpp-raa.so.4 libbpp-raa4 #MINVER#
+ _ZN3bpp14RaaSpeciesTree10firstChildEi at Base 2.4.1
+ _ZN3bpp14RaaSpeciesTree11nextSynonymEi at Base 2.4.1
+ _ZN3bpp14RaaSpeciesTree5countEi at Base 2.4.1
+ _ZN3bpp14RaaSpeciesTree5labelB5cxx11Ei at Base 2.4.1
+ _ZN3bpp14RaaSpeciesTree6getTidEi at Base 2.4.1
+ _ZN3bpp14RaaSpeciesTree6parentEi at Base 2.4.1
+ _ZN3bpp14RaaSpeciesTree7getNameB5cxx11Ei at Base 2.4.1
+ _ZN3bpp14RaaSpeciesTree7isChildEii at Base 2.4.1
+ _ZN3bpp14RaaSpeciesTree8findNodeERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEb at Base 2.4.1
+ _ZN3bpp14RaaSpeciesTree8findNodeEi at Base 2.4.1
+ _ZN3bpp14RaaSpeciesTree8getMajorEi at Base 2.4.1
+ _ZN3bpp14RaaSpeciesTree9nextChildEii at Base 2.4.1
+ _ZN3bpp16BadCharExceptionD0Ev at Base 2.4.1
+ _ZN3bpp16BadCharExceptionD1Ev at Base 2.4.1
+ _ZN3bpp16BadCharExceptionD2Ev at Base 2.4.1
+ _ZN3bpp17AlphabetExceptionD0Ev at Base 2.4.1
+ _ZN3bpp17AlphabetExceptionD1Ev at Base 2.4.1
+ _ZN3bpp17AlphabetExceptionD2Ev at Base 2.4.1
+ _ZN3bpp3RAA10deleteListEPNS_7RaaListE at Base 2.4.1
+ _ZN3bpp3RAA10getSeqFragERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiiRS6_ at Base 2.4.1
+ _ZN3bpp3RAA10getSeqFragEiiiRNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 2.4.1
+ _ZN3bpp3RAA11getSeq_bothERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEii at Base 2.4.1
+ _ZN3bpp3RAA12openDatabaseERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPFPcPvESA_ at Base 2.4.1
+ _ZN3bpp3RAA12processQueryERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES8_ at Base 2.4.1
+ _ZN3bpp3RAA12translateCDSERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 2.4.1
+ _ZN3bpp3RAA12translateCDSEi at Base 2.4.1
+ _ZN3bpp3RAA13closeDatabaseEv at Base 2.4.1
+ _ZN3bpp3RAA13getAttributesERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 2.4.1
+ _ZN3bpp3RAA13getAttributesEi at Base 2.4.1
+ _ZN3bpp3RAA14getNextFeatureEPv at Base 2.4.1
+ _ZN3bpp3RAA14keywordPatternERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 2.4.1
+ _ZN3bpp3RAA14knownDatabasesERSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EESA_ at Base 2.4.1
+ _ZN3bpp3RAA15createEmptyListERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES8_ at Base 2.4.1
+ _ZN3bpp3RAA15freeSpeciesTreeEPNS_14RaaSpeciesTreeE at Base 2.4.1
+ _ZN3bpp3RAA15loadSpeciesTreeEb at Base 2.4.1
+ _ZN3bpp3RAA16getDirectFeatureERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES8_S8_S8_ at Base 2.4.1
+ _ZN3bpp3RAA16getNextAnnotLineB5cxx11Ev at Base 2.4.1
+ _ZN3bpp3RAA17getFirstAnnotLineB5cxx11Ei at Base 2.4.1
+ _ZN3bpp3RAA18listAllFeatureKeysB5cxx11Ev at Base 2.4.1
+ _ZN3bpp3RAA18translateInitCodonEi at Base 2.4.1
+ _ZN3bpp3RAA19nextMatchingKeywordERNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 2.4.1
+ _ZN3bpp3RAA20prepareGetAnyFeatureEiRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 2.4.1
+ _ZN3bpp3RAA21getAnnotLineAtAddressB5cxx11ENS_10RaaAddressE at Base 2.4.1
+ _ZN3bpp3RAA21listDirectFeatureKeysB5cxx11Ev at Base 2.4.1
+ _ZN3bpp3RAA22getCurrentAnnotAddressEv at Base 2.4.1
+ _ZN3bpp3RAA22interruptGetAnyFeatureEPv at Base 2.4.1
+ _ZN3bpp3RAA6getSeqERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEi at Base 2.4.1
+ _ZN3bpp3RAA6getSeqEii at Base 2.4.1
+ _ZN3bpp3RAAC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiS8_ at Base 2.4.1
+ _ZN3bpp3RAAC1EiRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 2.4.1
+ _ZN3bpp3RAAC2ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiS8_ at Base 2.4.1
+ _ZN3bpp3RAAC2EiRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 2.4.1
+ _ZN3bpp3RAAD1Ev at Base 2.4.1
+ _ZN3bpp3RAAD2Ev at Base 2.4.1
+ _ZN3bpp7RaaList10addElementEi at Base 2.4.1
+ _ZN3bpp7RaaList11nextElementEv at Base 2.4.1
+ _ZN3bpp7RaaList11parentsOnlyEv at Base 2.4.1
+ _ZN3bpp7RaaList12LIST_SPECIESB5cxx11E at Base 2.4.1
+ _ZN3bpp7RaaList12firstElementEv at Base 2.4.1
+ _ZN3bpp7RaaList12modifyByDateERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES8_ at Base 2.4.1
+ _ZN3bpp7RaaList12residueCountB5cxx11Ev at Base 2.4.1
+ _ZN3bpp7RaaList13LIST_KEYWORDSB5cxx11E at Base 2.4.1
+ _ZN3bpp7RaaList13removeElementEi at Base 2.4.1
+ _ZN3bpp7RaaList14LIST_SEQUENCESB5cxx11E at Base 2.4.1
+ _ZN3bpp7RaaList14modifyByLengthERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES8_ at Base 2.4.1
+ _ZN3bpp7RaaList7setFromEi at Base 2.4.1
+ _ZN3bpp7RaaList8getCountEv at Base 2.4.1
+ _ZN3bpp7RaaList8isInListEi at Base 2.4.1
+ _ZN3bpp7RaaList8zeroListEv at Base 2.4.1
+ _ZN3bpp7RaaListC1Ev at Base 2.4.1
+ _ZN3bpp7RaaListC2Ev at Base 2.4.1
+ _ZNK3bpp17AlphabetException11getAlphabetEv at Base 2.4.1
+ _ZNSt12_Vector_baseINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED1Ev at Base 2.4.1
+ _ZNSt12_Vector_baseINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED2Ev at Base 2.4.1
+ _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_default_appendEm at Base 2.4.1
+ _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_ at Base 2.4.1
+ _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED1Ev at Base 2.4.1
+ _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED2Ev at Base 2.4.1
+ _ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEC1IS3_EEPKcRKS3_ at Base 2.4.1
+ _ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEC2IS3_EEPKcRKS3_ at Base 2.4.1
+ _ZSt18__do_uninit_fill_nIPNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEmS5_ET_S7_T0_RKT1_ at Base 2.4.1
+ _ZTINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 2.4.1
+ _ZTSNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 2.4.1
+ ajout_reponse at Base 2.4.1
+ aminoacids at Base 2.4.1
+ atoi_u at Base 2.4.1
+ calc_codon_number at Base 2.4.1
+ chg_acnuc at Base 2.4.1
+ clear_reponse at Base 2.4.1
+ close_sock_gz_r at Base 2.4.1
+ codaa at Base 2.4.1
+ compact at Base 2.4.1
+ compch at Base 2.4.1
+ complementer_base at Base 2.4.1
+ complementer_seq at Base 2.4.1
+ genetic_code at Base 2.4.1
+ get_acnuc_gc_number at Base 2.4.1
+ get_code_descr at Base 2.4.1
+ get_ncbi_gc_number at Base 2.4.1
+ gets_no_echo at Base 2.4.1
+ init_codon_to_aa at Base 2.4.1
+ initreponse at Base 2.4.1
+ majuscules at Base 2.4.1
+ mycalloc at Base 2.4.1
+ notrail2 at Base 2.4.1
+ padtosize at Base 2.4.1
+ parse at Base 2.4.1
+ prepare_sock_gz_r at Base 2.4.1
+ prepch at Base 2.4.1
+ print_raa_long at Base 2.4.1
+ raa_1_coordinate_set at Base 2.4.1
+ raa_MD5String at Base 2.4.1
+ raa_acnucclose at Base 2.4.1
+ raa_acnucopen at Base 2.4.1
+ raa_acnucopen_alt at Base 2.4.1
+ raa_alllistranks at Base 2.4.1
+ raa_bcount at Base 2.4.1
+ raa_bit0 at Base 2.4.1
+ raa_bit1 at Base 2.4.1
+ raa_btest at Base 2.4.1
+ raa_copylist at Base 2.4.1
+ raa_countfilles at Base 2.4.1
+ raa_decode_address at Base 2.4.1
+ raa_error_mess_proc at Base 2.4.1
+ raa_fcode at Base 2.4.1
+ raa_followshrt2 at Base 2.4.1
+ raa_get_taxon_info at Base 2.4.1
+ raa_getattributes at Base 2.4.1
+ raa_getemptylist at Base 2.4.1
+ raa_getlistrank at Base 2.4.1
+ raa_getliststate at Base 2.4.1
+ raa_gfrag at Base 2.4.1
+ raa_ghelp at Base 2.4.1
+ raa_iknum at Base 2.4.1
+ raa_isenum at Base 2.4.1
+ raa_knowndbs at Base 2.4.1
+ raa_loadtaxonomy at Base 2.4.1
+ raa_modifylist at Base 2.4.1
+ raa_next_annots at Base 2.4.1
+ raa_nexteltinlist at Base 2.4.1
+ raa_nexteltinlist_annots at Base 2.4.1
+ raa_nextmatchkey at Base 2.4.1
+ raa_open_socket at Base 2.4.1
+ raa_opendb at Base 2.4.1
+ raa_opendb_pw at Base 2.4.1
+ raa_prep_acnuc_query at Base 2.4.1
+ raa_prep_coordinates at Base 2.4.1
+ raa_proc_query at Base 2.4.1
+ raa_read_annots at Base 2.4.1
+ raa_read_first_rec at Base 2.4.1
+ raa_readacc at Base 2.4.1
+ raa_readext at Base 2.4.1
+ raa_readkey at Base 2.4.1
+ raa_readlng at Base 2.4.1
+ raa_readloc at Base 2.4.1
+ raa_readshrt at Base 2.4.1
+ raa_readsmj at Base 2.4.1
+ raa_readspec at Base 2.4.1
+ raa_readsub at Base 2.4.1
+ raa_readsub_pannots at Base 2.4.1
+ raa_releaselist at Base 2.4.1
+ raa_residuecount at Base 2.4.1
+ raa_savelist at Base 2.4.1
+ raa_seq_to_annots at Base 2.4.1
+ raa_seqrank_attributes at Base 2.4.1
+ raa_setlistname at Base 2.4.1
+ raa_setliststate at Base 2.4.1
+ raa_short_descr at Base 2.4.1
+ raa_translate_cds at Base 2.4.1
+ raa_translate_init_codon at Base 2.4.1
+ raa_zerolist at Base 2.4.1
+ read_sock at Base 2.4.1
+ read_sock_timeout at Base 2.4.1
+ scan_raa_long at Base 2.4.1
+ sock_flush at Base 2.4.1
+ sock_fputs at Base 2.4.1
+ sock_printf at Base 2.4.1
+ strcmptrail at Base 2.4.1
+ totcodes at Base 2.4.1
+ trim_key at Base 2.4.1
+ unprotect_quotes at Base 2.4.1
+ val at Base 2.4.1
+ z_getc at Base 2.4.1
+ z_gets at Base 2.4.1
+ z_read_sock at Base 2.4.1
diff -Nru libbpp-raa-2.4.1/debian/libbpp-raa4t64.lintian-overrides libbpp-raa-2.4.1/debian/libbpp-raa4t64.lintian-overrides
--- libbpp-raa-2.4.1/debian/libbpp-raa4t64.lintian-overrides 1970-01-01 00:00:00.000000000 +0000
+++ libbpp-raa-2.4.1/debian/libbpp-raa4t64.lintian-overrides 2024-01-31 20:05:05.000000000 +0000
@@ -0,0 +1 @@
+libbpp-raa4t64: package-name-doesnt-match-sonames libbpp-raa4
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