[Debian-med-packaging] Bug#1075154: libbpp-seq-omics: ftbfs with GCC-14

Wed Jul 3 13:32:48 BST 2024

Package: src:libbpp-seq-omics
Version: 2.4.1-11
Severity: important
Tags: sid trixie
User: debian-gcc at lists.debian.org
Usertags: ftbfs-gcc-14

[This bug is targeted to the upcoming trixie release]

Please keep this issue open in the bug tracker for the package it
was filed for.  If a fix in another package is required, please
file a bug for the other package (or clone), and add a block in this
package. Please keep the issue open until the package can be built in
a follow-up test rebuild.

The package fails to build in a test rebuild on at least amd64 with
gcc-14/g++-14, but succeeds to build with gcc-13/g++-13. The
severity of this report will be raised before the trixie release.

The full build log can be found at:
http://qa-logs.debian.net/2024/07/01/libbpp-seq-omics_2.4.1-11_unstable_gccexp.log
The last lines of the build log are at the end of this report.

To build with GCC 14, either set CC=gcc-14 CXX=g++-14 explicitly,
or install the gcc, g++, gfortran, ... packages from experimental.

  apt-get -t=experimental install g++ 

Common build failures are new warnings resulting in build failures with
-Werror turned on, or new/dropped symbols in Debian symbols files.
For other C/C++ related build failures see the porting guide at
http://gcc.gnu.org/gcc-14/porting_to.html

[...]
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  _ZNSt6vectorIS_IiSaIiEESaIS1_EED1Ev at Base 2.4.1
  _ZNSt6vectorIS_IiSaIiEESaIS1_EED2Ev at Base 2.4.1
  _ZNSt6vectorIS_ImSaImEESaIS1_EED1Ev at Base 2.4.1
@@ -545,35 +553,41 @@
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  _ZNSt6vectorIbSaIbEEC2ERKS1_ at Base 2.4.1
  _ZNSt6vectorIiSaIiEE17_M_default_appendEm at Base 2.4.1
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  _ZSt16__do_uninit_copyIN9__gnu_cxx17__normal_iteratorIPKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt6vectorIS7_SaIS7_EEEEPS7_ET0_T_SG_SF_ at Base 2.4.1
  _ZSt16__introsort_loopIN9__gnu_cxx17__normal_iteratorIPPN3bpp5RangeImEESt6vectorIS5_SaIS5_EEEElNS0_5__ops15_Iter_comp_iterINS2_10rangeComp_ImEEEEEvT_SG_T0_T1_ at Base 2.4.1
- _ZSteqIbSaIbEEbRKSt6vectorIT_T0_ES6_ at Base 2.4.1-11~
+#MISSING: 2.4.1-11# _ZSteqIbSaIbEEbRKSt6vectorIT_T0_ES6_ at Base 2.4.1-11~
  _ZStplIcSt11char_traitsIcESaIcEENSt7__cxx1112basic_stringIT_T0_T1_EEOS8_S9_ at Base 2.4.1
  _ZStplIcSt11char_traitsIcESaIcEENSt7__cxx1112basic_stringIT_T0_T1_EEPKS5_OS8_ at Base 2.4.1
  _ZTIN3bpp10BppIntegerE at Base 2.4.1
dh_makeshlibs: error: failing due to earlier errors
make: *** [debian/rules:8: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2

