[Debian-med-packaging] Bug#1076914: q2-quality-control: FTBFS: rm: cannot remove '/<<PKGBUILDDIR>>/debian/*/usr/lib/python3*/dist-packages/run_decontam.R': No such file or directory

Santiago Vila sanvila at debian.org
Wed Jul 24 11:49:01 BST 2024


Package: src:q2-quality-control
Version: 2024.5.0-1
Severity: serious
Tags: ftbfs

Dear maintainer:

During a rebuild of all packages in unstable, your package failed to build:

--------------------------------------------------------------------------------
[...]
  debian/rules binary
dh binary --buildsystem=pybuild
    dh_update_autotools_config -O--buildsystem=pybuild
    dh_autoreconf -O--buildsystem=pybuild
    dh_auto_configure -O--buildsystem=pybuild
    dh_auto_build -O--buildsystem=pybuild
    debian/rules override_dh_auto_test
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_test -- -s custom --test-args="cd {build_dir}; py.test-3 --cov=q2_quality_control" || true
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
    create-stamp debian/debhelper-build-stamp
    dh_testroot -O--buildsystem=pybuild
    dh_prep -O--buildsystem=pybuild
    dh_auto_install --destdir=debian/q2-quality-control/ -O--buildsystem=pybuild
    debian/rules execute_after_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
rm -v /<<PKGBUILDDIR>>/debian/*/usr/lib/python3*/dist-packages/run_decontam.R
rm: cannot remove '/<<PKGBUILDDIR>>/debian/*/usr/lib/python3*/dist-packages/run_decontam.R': No such file or directory
make[1]: *** [debian/rules:32: execute_after_dh_install] Error 1
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:22: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------

The above is just how the build ends and not necessarily the most relevant part.
If required, the full build log is available here:

https://people.debian.org/~sanvila/build-logs/202407/

About the archive rebuild: The build was made on virtual machines
of type m6a.large and r6a.large from AWS, using sbuild and a
reduced chroot with only build-essential packages.

If you could not reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.

If this is really a bug in one of the build-depends, please use
reassign and affects, so that this is still visible in the BTS web
page for this package.

Thanks.



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