[Debian-med-packaging] Bug#1073321: libsbml: FTBFS: LibXMLParser.cpp:427:46: error: invalid conversion from ‘const xmlError*’ {aka ‘const _xmlError*’} to ‘xmlErrorPtr’ {aka ‘_xmlError*’} [-fpermissive]

[Lucas Nussbaum]

Source: libsbml
Version: 5.20.2+dfsg-7
Severity: serious
Justification: FTBFS
Tags: trixie sid ftbfs
User: lucas at debian.org
Usertags: ftbfs-20240615 ftbfs-trixie

Hi,

During a rebuild of all packages in sid, your package failed to build
on amd64.


Relevant part (hopefully):
> cd /<<PKGBUILDDIR>>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<<PKGBUILDDIR>>/build/src/src/sbml -I/<<PKGBUILDDIR>>/build/src/src -I/<<PKGBUILDDIR>>/build/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/sbml -I/<<PKGBUILDDIR>>/src/sbml/packages/comp/common -I/<<PKGBUILDDIR>>/src/sbml/packages/comp/extension -I/<<PKGBUILDDIR>>/src/sbml/packages/comp/sbml -I/<<PKGBUILDDIR>>/src/sbml/packages/comp/util -I/<<PKGBUILDDIR>>/src/sbml/packages/comp/validator -I/<<PKGBUILDDIR>>/src/sbml/packages/comp/validator/constraints -I/<<PKGBUILDDIR>>/src/sbml/packages/fbc/common -I/<<PKGBUILDDIR>>/src/sbml/packages/fbc/extension -I/<<PKGBUILDDIR>>/src/sbml/packages/fbc/sbml -I/<<PKGBUILDDIR>>/src/sbml/packages/fbc/util -I/<<PKGBUILDDIR>>/src/sbml/packages/fbc/validator -I/<<PKGBUILDDIR>>/src/sbml/packages/fbc/validator/constraints -I/<<PKGBUILDDIR>>/src/sbml/packages/groups/common -I/<<PKGBUILDDIR>>/src/sbml/packages/groups/extension -I/<<PKGBUILDDIR>>/src/sbml/packages/groups/sbml -I/<<PKGBUILDDIR>>/src/sbml/packages/groups/validator -I/<<PKGBUILDDIR>>/src/sbml/packages/groups/validator/constraints -I/<<PKGBUILDDIR>>/src/sbml/packages/l3v2extendedmath/common -I/<<PKGBUILDDIR>>/src/sbml/packages/l3v2extendedmath/extension -I/<<PKGBUILDDIR>>/src/sbml/packages/l3v2extendedmath/sbml -I/<<PKGBUILDDIR>>/src/sbml/packages/l3v2extendedmath/validator -I/<<PKGBUILDDIR>>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<<PKGBUILDDIR>>/src/sbml/packages/qual/common -I/<<PKGBUILDDIR>>/src/sbml/packages/qual/extension -I/<<PKGBUILDDIR>>/src/sbml/packages/qual/sbml -I/<<PKGBUILDDIR>>/src/sbml/packages/qual/validator -I/<<PKGBUILDDIR>>/src/sbml/packages/qual/validator/constraints -I/<<PKGBUILDDIR>>/src/sbml/packages/render/common -I/<<PKGBUILDDIR>>/src/sbml/packages/render/extension -I/<<PKGBUILDDIR>>/src/sbml/packages/render/sbml -I/<<PKGBUILDDIR>>/src/sbml/packages/render/util -I/<<PKGBUILDDIR>>/src/sbml/packages/render/validator -I/<<PKGBUILDDIR>>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC   -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/xml/LibXMLParser.cpp.o -MF CMakeFiles/sbml.dir/sbml/xml/LibXMLParser.cpp.o.d -o CMakeFiles/sbml.dir/sbml/xml/LibXMLParser.cpp.o -c /<<PKGBUILDDIR>>/src/sbml/xml/LibXMLParser.cpp
> /<<PKGBUILDDIR>>/src/sbml/xml/LibXMLParser.cpp: In member function ‘virtual bool LibXMLParser::parseNext()’:
> /<<PKGBUILDDIR>>/src/sbml/xml/LibXMLParser.cpp:427:46: error: invalid conversion from ‘const xmlError*’ {aka ‘const _xmlError*’} to ‘xmlErrorPtr’ {aka ‘_xmlError*’} [-fpermissive]
>   427 |     xmlErrorPtr libxmlError = xmlGetLastError();
>       |                               ~~~~~~~~~~~~~~~^~
>       |                                              |
>       |                                              const xmlError* {aka const _xmlError*}
> make[3]: *** [src/CMakeFiles/sbml.dir/build.make:5623: src/CMakeFiles/sbml.dir/sbml/xml/LibXMLParser.cpp.o] Error 1


The full build log is available from:
http://qa-logs.debian.net/2024/06/15/libsbml_5.20.2+dfsg-7_unstable.log

All bugs filed during this archive rebuild are listed at:
https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20240615;users=lucas@debian.org
or:
https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20240615&fusertaguser=lucas@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results

A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects

If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.