[Debian-med-packaging] Bug#1074158: FTBFS against dlib in experimental
Pierre Gruet
pgt at debian.org
Sun Jun 23 22:50:43 BST 2024
Package: vienna-rna
Version: 2.5.1+dfsg-1
Severity: important
Tags: patch ftbfs
Hi,
dlib is will undergo a transition, its new version currently lies in
experimental. vienna-rna fails to build against it because dlib needs C++14
while the source of vienna-rna includes --std=c++11 flags (build log enclosed).
Nevertheless, the build becomes successful when one turns
AX_CXX_COMPILE_STDCXX(11, noext, mandatory)
into
AX_CXX_COMPILE_STDCXX(14, noext, mandatory)
in m4/ac_rna_build_requirements.m4.
The severity of thus bug will be increased to serious once the transition
formally starts. I plan to do the necessary team uploads.
Best,
--
Pierre
-------------- next part --------------
sbuild (Debian sbuild) 0.85.10 (30 May 2024) on mendelssohn
+==============================================================================+
| vienna-rna 2.5.1+dfsg-1 (amd64) Sun, 23 Jun 2024 20:28:51 +0000 |
+==============================================================================+
Package: vienna-rna
Version: 2.5.1+dfsg-1
Source Version: 2.5.1+dfsg-1
Distribution: unstable
Machine Architecture: amd64
Host Architecture: amd64
Build Architecture: amd64
Build Type: full
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-4480b176-0af4-47c5-a3b4-471013defbee' with '<<CHROOT>>'
Copying /home/pierre/Documents/informatique/debian/paquets/dlib/libdlib19.1t64-dbgsym_19.24.4+dfsg-1_amd64.deb to /<<CHROOT>>...
Copying /home/pierre/Documents/informatique/debian/paquets/dlib/libdlib19.2-dbgsym_19.24.4+dfsg-1_amd64.deb to /<<CHROOT>>...
Copying /home/pierre/Documents/informatique/debian/paquets/dlib/libdlib-dev_19.24.4+dfsg-1_amd64.deb to /<<CHROOT>>...
Copying /home/pierre/Documents/informatique/debian/paquets/dlib/libdlib19.2_19.24.4+dfsg-1_amd64.deb to /<<CHROOT>>...
Copying /home/pierre/Documents/informatique/debian/paquets/dlib/libdlib-data_19.24.4+dfsg-1_all.deb to /<<CHROOT>>...
Copying /home/pierre/Documents/informatique/debian/paquets/dlib/libdlib19.1t64_19.24.4+dfsg-1_amd64.deb to /<<CHROOT>>...
I: NOTICE: Log filtering will replace 'build/vienna-rna-6y0QnS/resolver-9Z5u6L' with '<<RESOLVERDIR>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 file:/build/vienna-rna-6y0QnS/resolver-G31o1K/apt_archive ./ InRelease
Ign:1 file:/build/vienna-rna-6y0QnS/resolver-G31o1K/apt_archive ./ InRelease
Get:2 file:/build/vienna-rna-6y0QnS/resolver-G31o1K/apt_archive ./ Release [606 B]
Get:2 file:/build/vienna-rna-6y0QnS/resolver-G31o1K/apt_archive ./ Release [606 B]
Get:3 file:/build/vienna-rna-6y0QnS/resolver-G31o1K/apt_archive ./ Release.gpg
Ign:3 file:/build/vienna-rna-6y0QnS/resolver-G31o1K/apt_archive ./ Release.gpg
Get:4 file:/build/vienna-rna-6y0QnS/resolver-G31o1K/apt_archive ./ Packages [5942 B]
Get:5 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable InRelease [198 kB]
Get:6 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main Sources.diff/Index [63.6 kB]
Get:7 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 Packages.diff/Index [63.6 kB]
Get:8 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main Sources T-2024-06-23-1406.34-F-2024-06-23-1406.34.pdiff [12.6 kB]
Get:8 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main Sources T-2024-06-23-1406.34-F-2024-06-23-1406.34.pdiff [12.6 kB]
Get:9 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 Packages T-2024-06-23-1406.34-F-2024-06-23-1406.34.pdiff [16.5 kB]
Get:9 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 Packages T-2024-06-23-1406.34-F-2024-06-23-1406.34.pdiff [16.5 kB]
Fetched 355 kB in 5s (75.7 kB/s)
Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
Calculating upgrade...
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Local sources
-------------
/tmp/vienna-rna_2.5.1+dfsg-1.dsc exists in /tmp; copying to chroot
I: NOTICE: Log filtering will replace 'build/vienna-rna-6y0QnS/vienna-rna-2.5.1+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/vienna-rna-6y0QnS' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-python, python3-dev, pkg-config, libtool, gettext, swig (>= 4.0.2), perl-doc, perl, graphviz, libdlib-dev, libgsl-dev, liblapack-dev, libmpfr-dev, libsvm-dev, xxd, texlive-latex-extra, help2man, gengetopt, cthreadpool-dev, ghostscript, doxygen, texinfo, build-essential, fakeroot
Filtered Build-Depends: debhelper-compat (= 13), dh-python, python3-dev, pkg-config, libtool, gettext, swig (>= 4.0.2), perl-doc, perl, graphviz, libdlib-dev, libgsl-dev, liblapack-dev, libmpfr-dev, libsvm-dev, xxd, texlive-latex-extra, help2man, gengetopt, cthreadpool-dev, ghostscript, doxygen, texinfo, build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [609 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [874 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [907 B]
Fetched 2390 B in 0s (231 kB/s)
Reading package lists...
Get:1 file:/<<BUILDDIR>>/resolver-G31o1K/apt_archive ./ InRelease
Ign:1 file:/<<BUILDDIR>>/resolver-G31o1K/apt_archive ./ InRelease
Get:2 file:/<<BUILDDIR>>/resolver-G31o1K/apt_archive ./ Release [606 B]
Get:2 file:/<<BUILDDIR>>/resolver-G31o1K/apt_archive ./ Release [606 B]
Get:3 file:/<<BUILDDIR>>/resolver-G31o1K/apt_archive ./ Release.gpg
Ign:3 file:/<<BUILDDIR>>/resolver-G31o1K/apt_archive ./ Release.gpg
Reading package lists...
Reading package lists...
Install main build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils cthreadpool-dev
debhelper dh-autoreconf dh-python dh-strip-nondeterminism doxygen dwz file
fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
fonts-lmodern fonts-urw-base35 gengetopt gettext gettext-base ghostscript
graphviz groff-base help2man intltool-debian libabsl20230802 libann0 libaom3
libapache-pom-java libarchive-zip-perl libavahi-client3 libavahi-common-data
libavahi-common3 libavif16 libblas-dev libblas3 libbrotli1 libcairo2 libcdt5
libcgraph6 libclang-cpp16t64 libclang1-16t64 libcom-err2
libcommons-logging-java libcommons-parent-java libcups2t64 libdatrie1
libdav1d7 libdbus-1-3 libde265-0 libdebhelper-perl libdeflate0 libdlib-data
libdlib-dev libdlib19.2 libdrm-amdgpu1 libdrm-common libdrm-intel1
libdrm-radeon1 libdrm2 libedit2 libelf1t64 libexpat1 libexpat1-dev
libfile-stripnondeterminism-perl libfmt9 libfontbox-java libfontconfig1
libfontenc1 libfreetype6 libfribidi0 libgav1-1 libgd3 libgfortran5
libgl1-mesa-dri libglapi-mesa libglib2.0-0t64 libglvnd0 libglx-mesa0 libglx0
libgmp-dev libgmpxx4ldbl libgraphite2-3 libgs-common libgs10 libgs10-common
libgsl-dev libgsl27 libgslcblas0 libgssapi-krb5-2 libgts-0.7-5t64 libgvc6
libgvpr2 libharfbuzz0b libheif-plugin-dav1d libheif-plugin-libde265 libheif1
libhwloc15 libice6 libicu72 libidn12 libijs-0.35 libjbig0 libjbig2dec0
libjpeg62-turbo libjs-jquery libjs-sphinxdoc libjs-underscore libk5crypto3
libkeyutils1 libkpathsea6 libkrb5-3 libkrb5support0 liblab-gamut1
liblapack-dev liblapack3 liblcms2-2 liblerc4 libllvm16t64 libllvm17t64
liblocale-gettext-perl libltdl7 libmagic-mgc libmagic1t64 libmpfi0
libmpfr-dev libncursesw6 libopencv-core-dev libopencv-core406t64
libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
libpaper-utils libpaper1 libpathplan4 libpciaccess0 libpdfbox-java
libpipeline1 libpixman-1-0 libpkgconf3 libpng-dev libpng16-16t64 libpotrace0
libptexenc1 libpython3-dev libpython3-stdlib libpython3.11-dev
libpython3.11-minimal libpython3.11-stdlib libpython3.11t64 librav1e0
libreadline8t64 libsensors-config libsensors5 libsharpyuv0 libsm6
libsqlite3-0 libsqlite3-dev libsvm-dev libsvm3 libsvtav1enc1d1 libsynctex2
libtbb-dev libtbb12 libtbbbind-2-5 libtbbmalloc2 libteckit0 libtexlua53-5
libtext-unidecode-perl libthai-data libthai0 libtiff6 libtool libuchardet0
libvulkan1 libwebp7 libx11-6 libx11-data libx11-dev libx11-xcb1 libxapian30
libxau-dev libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0
libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shm0 libxcb-sync1
libxcb-xfixes0 libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxext6
libxfixes3 libxi6 libxml-libxml-perl libxml-namespacesupport-perl
libxml-sax-base-perl libxml-sax-perl libxml2 libxmu6 libxpm4 libxrender1
libxshmfence1 libxt6t64 libxxf86vm1 libyuv0 libz3-4 libzzip-0-13t64 m4
man-db media-types netbase perl-doc pkg-config pkgconf pkgconf-bin
po-debconf poppler-data preview-latex-style pybind11-dev python3 python3-dev
python3-distutils python3-lib2to3 python3-minimal python3-pkg-resources
python3-setuptools python3.11 python3.11-dev python3.11-minimal
readline-common sensible-utils swig t1utils tex-common texinfo texinfo-lib
texlive-base texlive-binaries texlive-latex-base texlive-latex-extra
texlive-latex-recommended texlive-pictures tzdata ucf x11-common
x11proto-dev xdg-utils xfonts-encodings xfonts-utils xorg-sgml-doctools
xtrans-dev xxd zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc dh-make flit python3-build
python3-installer python3-wheel doxygen-latex doxygen-doc doxygen-gui
fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre gettext-doc
libasprintf-dev libgettextpo-dev gsfonts graphviz-doc groff liblapack-doc
libavalon-framework-java libexcalibur-logkit-java liblog4j1.2-java
cups-common libgd-tools low-memory-monitor gmp-doc libgmp10-doc
gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html krb5-doc krb5-user
libheif-plugin-ffmpegdec libheif-plugin-jpegdec libheif-plugin-jpegenc
libheif-plugin-j2kdec libheif-plugin-j2kenc libheif-plugin-rav1e
libheif-plugin-svtenc libhwloc-contrib-plugins liblcms2-utils libmpfi-doc
libmpfr-doc pciutils lm-sensors sqlite3-doc libtbb-doc libtool-doc gfortran
| fortran95-compiler gcj-jdk libx11-doc xapian-tools libxcb-doc m4-doc
apparmor less www-browser libmail-box-perl poppler-utils
fonts-japanese-mincho | fonts-ipafont-mincho fonts-japanese-gothic
| fonts-ipafont-gothic fonts-arphic-ukai fonts-arphic-uming fonts-nanum
pybind11-doc python3-doc python3-tk python3-venv python-setuptools-doc
python3.11-venv python3.11-doc binfmt-support readline-doc swig-doc
swig-examples texlive-plain-generic texlive-fonts-recommended perl-tk xpdf
| pdf-viewer xzdec texlive-binaries-sse2 hintview texlive-latex-base-doc
wp2latex python3-pygments icc-profiles libfile-which-perl
texlive-latex-extra-doc texlive-science texlive-latex-recommended-doc
texlive-luatex texlive-pstricks dot2tex prerex texlive-pictures-doc vprerex
Recommended packages:
curl | wget | lynx fonts-liberation2 dbus libarchive-cpio-perl
libglib2.0-data shared-mime-info xdg-user-dirs fonts-droid-fallback
libgts-bin libheif-plugin-x265 libheif-plugin-aomenc libhwloc-plugins
javascript-common krb5-locales libgpm2 libpng-tools libltdl-dev
mesa-vulkan-drivers | vulkan-icd libwww-perl libxml-sax-expat-perl
libmail-sendmail-perl libeigen3-dev ca-certificates lmodern dvisvgm
default-jre libspreadsheet-parseexcel-perl texlive-fonts-recommended
texlive-plain-generic ruby tk libfile-mimeinfo-perl libnet-dbus-perl
libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils cthreadpool-dev
debhelper dh-autoreconf dh-python dh-strip-nondeterminism doxygen dwz file
fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
fonts-lmodern fonts-urw-base35 gengetopt gettext gettext-base ghostscript
graphviz groff-base help2man intltool-debian libabsl20230802 libann0 libaom3
libapache-pom-java libarchive-zip-perl libavahi-client3 libavahi-common-data
libavahi-common3 libavif16 libblas-dev libblas3 libbrotli1 libcairo2 libcdt5
libcgraph6 libclang-cpp16t64 libclang1-16t64 libcom-err2
libcommons-logging-java libcommons-parent-java libcups2t64 libdatrie1
libdav1d7 libdbus-1-3 libde265-0 libdebhelper-perl libdeflate0 libdlib-data
libdlib-dev libdlib19.2 libdrm-amdgpu1 libdrm-common libdrm-intel1
libdrm-radeon1 libdrm2 libedit2 libelf1t64 libexpat1 libexpat1-dev
libfile-stripnondeterminism-perl libfmt9 libfontbox-java libfontconfig1
libfontenc1 libfreetype6 libfribidi0 libgav1-1 libgd3 libgfortran5
libgl1-mesa-dri libglapi-mesa libglib2.0-0t64 libglvnd0 libglx-mesa0 libglx0
libgmp-dev libgmpxx4ldbl libgraphite2-3 libgs-common libgs10 libgs10-common
libgsl-dev libgsl27 libgslcblas0 libgssapi-krb5-2 libgts-0.7-5t64 libgvc6
libgvpr2 libharfbuzz0b libheif-plugin-dav1d libheif-plugin-libde265 libheif1
libhwloc15 libice6 libicu72 libidn12 libijs-0.35 libjbig0 libjbig2dec0
libjpeg62-turbo libjs-jquery libjs-sphinxdoc libjs-underscore libk5crypto3
libkeyutils1 libkpathsea6 libkrb5-3 libkrb5support0 liblab-gamut1
liblapack-dev liblapack3 liblcms2-2 liblerc4 libllvm16t64 libllvm17t64
liblocale-gettext-perl libltdl7 libmagic-mgc libmagic1t64 libmpfi0
libmpfr-dev libncursesw6 libopencv-core-dev libopencv-core406t64
libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
libpaper-utils libpaper1 libpathplan4 libpciaccess0 libpdfbox-java
libpipeline1 libpixman-1-0 libpkgconf3 libpng-dev libpng16-16t64 libpotrace0
libptexenc1 libpython3-dev libpython3-stdlib libpython3.11-dev
libpython3.11-minimal libpython3.11-stdlib libpython3.11t64 librav1e0
libreadline8t64 libsensors-config libsensors5 libsharpyuv0 libsm6
libsqlite3-0 libsqlite3-dev libsvm-dev libsvm3 libsvtav1enc1d1 libsynctex2
libtbb-dev libtbb12 libtbbbind-2-5 libtbbmalloc2 libteckit0 libtexlua53-5
libtext-unidecode-perl libthai-data libthai0 libtiff6 libtool libuchardet0
libvulkan1 libwebp7 libx11-6 libx11-data libx11-dev libx11-xcb1 libxapian30
libxau-dev libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0
libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shm0 libxcb-sync1
libxcb-xfixes0 libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxext6
libxfixes3 libxi6 libxml-libxml-perl libxml-namespacesupport-perl
libxml-sax-base-perl libxml-sax-perl libxml2 libxmu6 libxpm4 libxrender1
libxshmfence1 libxt6t64 libxxf86vm1 libyuv0 libz3-4 libzzip-0-13t64 m4
man-db media-types netbase perl-doc pkg-config pkgconf pkgconf-bin
po-debconf poppler-data preview-latex-style pybind11-dev python3 python3-dev
python3-distutils python3-lib2to3 python3-minimal python3-pkg-resources
python3-setuptools python3.11 python3.11-dev python3.11-minimal
readline-common sbuild-build-depends-main-dummy sensible-utils swig t1utils
tex-common texinfo texinfo-lib texlive-base texlive-binaries
texlive-latex-base texlive-latex-extra texlive-latex-recommended
texlive-pictures tzdata ucf x11-common x11proto-dev xdg-utils
xfonts-encodings xfonts-utils xorg-sgml-doctools xtrans-dev xxd zlib1g-dev
0 upgraded, 264 newly installed, 0 to remove and 0 not upgraded.
Need to get 286 MB/355 MB of archives.
After this operation, 1258 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [1028 B]
Get:2 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-7 [15.0 kB]
Get:3 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 poppler-data all 0.4.12-1 [1601 kB]
Get:4 file:/<<BUILDDIR>>/resolver-G31o1K/apt_archive ./ libdlib-data 19.24.4+dfsg-1 [63.4 MB]
Get:5 file:/<<BUILDDIR>>/resolver-G31o1K/apt_archive ./ libdlib19.2 19.24.4+dfsg-1 [3815 kB]
Get:6 file:/<<BUILDDIR>>/resolver-G31o1K/apt_archive ./ libdlib-dev 19.24.4+dfsg-1 [2184 kB]
Get:7 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libpython3.11-minimal amd64 3.11.9-1 [817 kB]
Get:8 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.2-1 [103 kB]
Get:9 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 python3.11-minimal amd64 3.11.9-1 [1879 kB]
Get:10 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 python3-minimal amd64 3.11.8-1 [26.3 kB]
Get:11 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 media-types all 10.1.0 [26.9 kB]
Get:12 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 netbase all 6.4 [12.8 kB]
Get:13 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 tzdata all 2024a-4 [255 kB]
Get:14 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libncursesw6 amd64 6.5-2 [135 kB]
Get:15 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 readline-common all 8.2-4 [69.3 kB]
Get:16 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-4 [167 kB]
Get:17 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libsqlite3-0 amd64 3.46.0-1 [902 kB]
Get:18 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libpython3.11-stdlib amd64 3.11.9-1 [1792 kB]
Get:19 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 python3.11 amd64 3.11.9-1 [602 kB]
Get:20 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.11.8-1 [9332 B]
Get:21 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 python3 amd64 3.11.8-1 [27.4 kB]
Get:22 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 sensible-utils all 0.0.23 [24.7 kB]
Get:23 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB]
Get:24 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB]
Get:25 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 file amd64 1:5.45-3 [42.9 kB]
Get:26 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 gettext-base amd64 0.21-15 [161 kB]
Get:27 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB]
Get:28 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-4 [1180 kB]
Get:29 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.1-8.1 [96.2 kB]
Get:30 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB]
Get:31 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 man-db amd64 2.12.1-2 [1411 kB]
Get:32 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 ucf all 3.0043+nmu1 [55.2 kB]
Get:33 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB]
Get:34 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 autoconf all 2.71-3 [332 kB]
Get:35 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB]
Get:36 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB]
Get:37 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 autopoint all 0.21-15 [683 kB]
Get:38 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 cthreadpool-dev all 0.0+git20231218.4eb5a69-1 [11.7 kB]
Get:39 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.16 [88.6 kB]
Get:40 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libtool all 2.4.7-7 [517 kB]
Get:41 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB]
Get:42 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB]
Get:43 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB]
Get:44 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B]
Get:45 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB]
Get:46 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB]
Get:47 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB]
Get:48 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg-3 [670 kB]
Get:49 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 gettext amd64 0.21-15 [1301 kB]
Get:50 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:51 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB]
Get:52 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 debhelper all 13.16 [891 kB]
Get:53 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 python3-pkg-resources all 68.1.2-2 [241 kB]
Get:54 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 python3-lib2to3 all 3.12.3-3.1 [77.7 kB]
Get:55 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 python3-distutils all 3.12.3-3.1 [131 kB]
Get:56 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 python3-setuptools all 68.1.2-2 [468 kB]
Get:57 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 dh-python all 6.20240422 [107 kB]
Get:58 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libedit2 amd64 3.1-20240517-1 [93.3 kB]
Get:59 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libz3-4 amd64 4.8.12-3.1+b2 [7346 kB]
Get:60 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libllvm16t64 amd64 1:16.0.6-27 [23.1 MB]
Get:61 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libclang-cpp16t64 amd64 1:16.0.6-27 [11.5 MB]
Get:62 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libclang1-16t64 amd64 1:16.0.6-27 [6581 kB]
Get:63 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libfmt9 amd64 9.1.0+ds1-2 [113 kB]
Get:64 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libxapian30 amd64 1.4.25-1 [1139 kB]
Get:65 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 doxygen amd64 1.9.8+ds-2+b1 [4913 kB]
Get:66 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b3 [305 kB]
Get:67 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libpng16-16t64 amd64 1.6.43-5 [278 kB]
Get:68 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libfreetype6 amd64 2.13.2+dfsg-1+b4 [439 kB]
Get:69 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB]
Get:70 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 fonts-dejavu-core all 2.37-8 [840 kB]
Get:71 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libfontenc1 amd64 1:1.1.8-1 [23.0 kB]
Get:72 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 x11-common all 1:7.7+23 [252 kB]
Get:73 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB]
Get:74 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 xfonts-utils amd64 1:7.7+6 [93.0 kB]
Get:75 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 fonts-urw-base35 all 20200910-8 [10.8 MB]
Get:76 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 fontconfig-config amd64 2.15.0-1.1 [317 kB]
Get:77 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libfontconfig1 amd64 2.15.0-1.1 [388 kB]
Get:78 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 fontconfig amd64 2.15.0-1.1 [463 kB]
Get:79 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 fonts-lmodern all 2.005-1 [4540 kB]
Get:80 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 gengetopt amd64 2.23+dfsg1-1 [173 kB]
Get:81 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libgs-common all 10.03.1~dfsg-1 [148 kB]
Get:82 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libgs10-common all 10.03.1~dfsg-1 [474 kB]
Get:83 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libavahi-common-data amd64 0.8-13+b2 [112 kB]
Get:84 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libavahi-common3 amd64 0.8-13+b2 [43.3 kB]
Get:85 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libdbus-1-3 amd64 1.14.10-4+b1 [203 kB]
Get:86 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libavahi-client3 amd64 0.8-13+b2 [47.0 kB]
Get:87 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.2-1 [32.2 kB]
Get:88 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.1-1 [22.9 kB]
Get:89 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.2-1 [80.0 kB]
Get:90 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B]
Get:91 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.2-1 [324 kB]
Get:92 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.2-1 [136 kB]
Get:93 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libcups2t64 amd64 2.4.10-1 [249 kB]
Get:94 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libidn12 amd64 1.42-2 [80.4 kB]
Get:95 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libijs-0.35 amd64 0.35-15.1+b1 [15.1 kB]
Get:96 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libjbig2dec0 amd64 0.20-1+b2 [64.3 kB]
Get:97 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.1.5-3 [167 kB]
Get:98 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 liblcms2-2 amd64 2.14-2+b1 [154 kB]
Get:99 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libopenjp2-7 amd64 2.5.0-2+b3 [190 kB]
Get:100 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libpaper1 amd64 1.1.29+b1 [12.9 kB]
Get:101 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libdeflate0 amd64 1.20-1 [46.0 kB]
Get:102 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libjbig0 amd64 2.1-6.1+b1 [32.0 kB]
Get:103 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 liblerc4 amd64 4.0.0+ds-4+b1 [171 kB]
Get:104 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libsharpyuv0 amd64 1.4.0-0.1 [113 kB]
Get:105 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libwebp7 amd64 1.4.0-0.1 [311 kB]
Get:106 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libtiff6 amd64 4.5.1+git230720-4 [322 kB]
Get:107 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.9-1+b1 [18.1 kB]
Get:108 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.2-3+b1 [24.3 kB]
Get:109 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-2 [144 kB]
Get:110 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.7-1 [328 kB]
Get:111 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.7-1+b1 [799 kB]
Get:112 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libice6 amd64 2:1.0.10-1+b1 [56.7 kB]
Get:113 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libsm6 amd64 2:1.2.3-1+b1 [33.6 kB]
Get:114 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libxt6t64 amd64 1:1.2.1-1.2 [187 kB]
Get:115 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libgs10 amd64 10.03.1~dfsg-1 [2510 kB]
Get:116 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 ghostscript amd64 10.03.1~dfsg-1 [50.2 kB]
Get:117 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libann0 amd64 1.1.2+doc-9+b1 [25.1 kB]
Get:118 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libcdt5 amd64 2.42.2-9+b1 [39.8 kB]
Get:119 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libcgraph6 amd64 2.42.2-9+b1 [63.6 kB]
Get:120 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libaom3 amd64 3.8.2-3 [1869 kB]
Get:121 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libdav1d7 amd64 1.4.2-1 [551 kB]
Get:122 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libabsl20230802 amd64 20230802.1-4 [464 kB]
Get:123 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libgav1-1 amd64 0.19.0-2+b1 [351 kB]
Get:124 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 librav1e0 amd64 0.7.1-2 [900 kB]
Get:125 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libsvtav1enc1d1 amd64 1.7.0+dfsg-2+b1 [2169 kB]
Get:126 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libyuv0 amd64 0.0.1888.20240607-1 [170 kB]
Get:127 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libavif16 amd64 1.0.4-3 [106 kB]
Get:128 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libheif-plugin-dav1d amd64 1.17.6-3+b1 [10.1 kB]
Get:129 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libde265-0 amd64 1.0.15-1+b1 [187 kB]
Get:130 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libheif-plugin-libde265 amd64 1.17.6-3+b1 [13.4 kB]
Get:131 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libheif1 amd64 1.17.6-3+b1 [284 kB]
Get:132 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libxpm4 amd64 1:3.5.17-1+b1 [56.1 kB]
Get:133 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libgd3 amd64 2.3.3-9+b3 [125 kB]
Get:134 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libglib2.0-0t64 amd64 2.80.3-1 [1485 kB]
Get:135 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libgts-0.7-5t64 amd64 0.7.6+darcs121130-5.2 [157 kB]
Get:136 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libpixman-1-0 amd64 0.42.2-1+b1 [556 kB]
Get:137 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libxcb-render0 amd64 1.17.0-2 [115 kB]
Get:138 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libxcb-shm0 amd64 1.17.0-2 [105 kB]
Get:139 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB]
Get:140 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libxrender1 amd64 1:0.9.10-1.1+b1 [27.9 kB]
Get:141 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libcairo2 amd64 1.18.0-3+b1 [531 kB]
Get:142 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libltdl7 amd64 2.4.7-7+b1 [393 kB]
Get:143 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libfribidi0 amd64 1.0.13-3+b1 [71.4 kB]
Get:144 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libgraphite2-3 amd64 1.3.14-2 [74.9 kB]
Get:145 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libharfbuzz0b amd64 8.3.0-2+b1 [2214 kB]
Get:146 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libthai-data all 0.1.29-2 [168 kB]
Get:147 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libdatrie1 amd64 0.2.13-3 [37.7 kB]
Get:148 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libthai0 amd64 0.1.29-2 [49.1 kB]
Get:149 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libpango-1.0-0 amd64 1.54.0+ds-1 [219 kB]
Get:150 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libpangoft2-1.0-0 amd64 1.54.0+ds-1 [48.0 kB]
Get:151 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libpangocairo-1.0-0 amd64 1.54.0+ds-1 [35.0 kB]
Get:152 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libpathplan4 amd64 2.42.2-9+b1 [42.2 kB]
Get:153 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libgvc6 amd64 2.42.2-9+b1 [682 kB]
Get:154 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libgvpr2 amd64 2.42.2-9+b1 [189 kB]
Get:155 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 liblab-gamut1 amd64 2.42.2-9+b1 [198 kB]
Get:156 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libxmu6 amd64 2:1.1.3-3+b2 [58.7 kB]
Get:157 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libxaw7 amd64 2:1.0.14-1+b2 [199 kB]
Get:158 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 graphviz amd64 2.42.2-9+b1 [614 kB]
Get:159 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 help2man amd64 1.49.3 [198 kB]
Get:160 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libapache-pom-java all 29-2 [5276 B]
Get:161 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.0-3 [148 kB]
Get:162 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libblas-dev amd64 3.12.0-3 [159 kB]
Get:163 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libcommons-parent-java all 56-1 [10.8 kB]
Get:164 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libcommons-logging-java all 1.3.0-1 [68.6 kB]
Get:165 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libgfortran5 amd64 14.1.0-2 [837 kB]
Get:166 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.0-3 [2407 kB]
Get:167 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libglvnd0 amd64 1.7.0-1+b1 [56.3 kB]
Get:168 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libdrm-common all 2.4.121-2 [7972 B]
Get:169 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libdrm2 amd64 2.4.121-2 [38.3 kB]
Get:170 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libglapi-mesa amd64 24.1.1-2 [36.6 kB]
Get:171 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libx11-xcb1 amd64 2:1.8.7-1+b1 [232 kB]
Get:172 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libxcb-dri2-0 amd64 1.17.0-2 [106 kB]
Get:173 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libxcb-dri3-0 amd64 1.17.0-2 [107 kB]
Get:174 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libxcb-glx0 amd64 1.17.0-2 [122 kB]
Get:175 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libxcb-present0 amd64 1.17.0-2 [105 kB]
Get:176 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libxcb-randr0 amd64 1.17.0-2 [116 kB]
Get:177 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libxcb-sync1 amd64 1.17.0-2 [108 kB]
Get:178 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libxcb-xfixes0 amd64 1.17.0-2 [109 kB]
Get:179 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libxfixes3 amd64 1:6.0.0-2+b1 [20.3 kB]
Get:180 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libxshmfence1 amd64 1.3-1+b1 [8852 B]
Get:181 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b2 [20.8 kB]
Get:182 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libvulkan1 amd64 1.3.283.0-1 [125 kB]
Get:183 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libdrm-amdgpu1 amd64 2.4.121-2 [22.0 kB]
Get:184 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libpciaccess0 amd64 0.17-3+b1 [51.9 kB]
Get:185 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libdrm-intel1 amd64 2.4.121-2 [62.7 kB]
Get:186 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libdrm-radeon1 amd64 2.4.121-2 [22.3 kB]
Get:187 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libllvm17t64 amd64 1:17.0.6-12 [23.7 MB]
Get:188 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libsensors-config all 1:3.6.0-10 [14.6 kB]
Get:189 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libsensors5 amd64 1:3.6.0-10 [34.7 kB]
Get:190 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libgl1-mesa-dri amd64 24.1.1-2 [8635 kB]
Get:191 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libglx-mesa0 amd64 24.1.1-2 [152 kB]
Get:192 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libglx0 amd64 1.7.0-1+b1 [35.0 kB]
Get:193 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libtbbmalloc2 amd64 2021.11.0-2 [48.6 kB]
Get:194 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libhwloc15 amd64 2.10.0-1+b1 [161 kB]
Get:195 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libtbbbind-2-5 amd64 2021.11.0-2 [14.1 kB]
Get:196 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libtbb12 amd64 2021.11.0-2 [87.6 kB]
Get:197 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libopencv-core406t64 amd64 4.6.0+dfsg-13.1+b4 [1115 kB]
Get:198 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libtbb-dev amd64 2021.11.0-2 [193 kB]
Get:199 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1 [919 kB]
Get:200 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libopencv-core-dev amd64 4.6.0+dfsg-13.1+b4 [1863 kB]
Get:201 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libpng-dev amd64 1.6.43-5 [360 kB]
Get:202 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libsqlite3-dev amd64 3.46.0-1 [1096 kB]
Get:203 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB]
Get:204 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 x11proto-dev all 2024.1-1 [603 kB]
Get:205 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libxau-dev amd64 1:1.0.9-1+b1 [21.3 kB]
Get:206 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libxdmcp-dev amd64 1:1.1.2-3+b1 [40.8 kB]
Get:207 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 xtrans-dev all 1.4.0-1 [98.7 kB]
Get:208 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libxcb1-dev amd64 1.17.0-2 [181 kB]
Get:209 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libx11-dev amd64 2:1.8.7-1+b1 [875 kB]
Get:210 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libpython3.11t64 amd64 3.11.9-1 [1960 kB]
Get:211 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libexpat1-dev amd64 2.6.2-1 [155 kB]
Get:212 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libpython3.11-dev amd64 3.11.9-1 [4513 kB]
Get:213 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libpython3-dev amd64 3.11.8-1 [9560 B]
Get:214 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 pybind11-dev all 2.12.0-1 [198 kB]
Get:215 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libfontbox-java all 1:1.8.16-5 [211 kB]
Get:216 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-2+b1 [329 kB]
Get:217 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-2+b1 [640 kB]
Get:218 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libgslcblas0 amd64 2.7.1+dfsg-6+b1 [107 kB]
Get:219 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libgsl27 amd64 2.7.1+dfsg-6+b1 [934 kB]
Get:220 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libgsl-dev amd64 2.7.1+dfsg-6+b1 [1146 kB]
Get:221 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get:222 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB]
Get:223 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libjs-sphinxdoc all 7.2.6-9 [150 kB]
Get:224 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libkpathsea6 amd64 2024.20240313.70630+ds-2 [156 kB]
Get:225 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 liblapack-dev amd64 3.12.0-3 [4880 kB]
Get:226 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libmpfi0 amd64 1.5.4+ds-3 [35.1 kB]
Get:227 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libmpfr-dev amd64 4.2.1-1+b1 [263 kB]
Get:228 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libpaper-utils amd64 1.1.29+b1 [9176 B]
Get:229 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libpdfbox-java all 1:1.8.16-5 [5527 kB]
Get:230 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libpkgconf3 amd64 1.8.1-3 [36.2 kB]
Get:231 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libpotrace0 amd64 1.16-2+b1 [25.2 kB]
Get:232 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libptexenc1 amd64 2024.20240313.70630+ds-2 [48.5 kB]
Get:233 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libsvm3 amd64 3.24+ds-6+b1 [41.5 kB]
Get:234 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libsvm-dev amd64 3.24+ds-6+b1 [62.1 kB]
Get:235 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libsynctex2 amd64 2024.20240313.70630+ds-2 [62.2 kB]
Get:236 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libteckit0 amd64 2.5.12+ds1-1 [339 kB]
Get:237 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libtexlua53-5 amd64 2024.20240313.70630+ds-2 [113 kB]
Get:238 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libtext-unidecode-perl all 1.30-3 [101 kB]
Get:239 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libxi6 amd64 2:1.8.1-1 [79.0 kB]
Get:240 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB]
Get:241 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB]
Get:242 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB]
Get:243 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-3.1 [313 kB]
Get:244 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libzzip-0-13t64 amd64 0.13.72+dfsg.1-1.2+b1 [56.2 kB]
Get:245 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 perl-doc all 5.38.2-5 [7833 kB]
Get:246 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 pkgconf-bin amd64 1.8.1-3 [29.9 kB]
Get:247 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 pkgconf amd64 1.8.1-3 [26.1 kB]
Get:248 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 pkg-config amd64 1.8.1-3 [13.9 kB]
Get:249 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 tex-common all 6.18 [32.5 kB]
Get:250 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 preview-latex-style all 13.2-1 [350 kB]
Get:251 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 python3.11-dev amd64 3.11.9-1 [501 kB]
Get:252 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 python3-dev amd64 3.11.8-1 [26.1 kB]
Get:253 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 swig amd64 4.2.1-1 [1437 kB]
Get:254 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB]
Get:255 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 texinfo-lib amd64 7.1-3+b1 [224 kB]
Get:256 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 texinfo all 7.1-3 [1748 kB]
Get:257 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 texlive-binaries amd64 2024.20240313.70630+ds-2 [8438 kB]
Get:258 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 xdg-utils all 1.1.3-4.1 [75.5 kB]
Get:259 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 texlive-base all 2024.20240401-3 [22.7 MB]
Get:260 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 texlive-latex-base all 2024.20240401-3 [1258 kB]
Get:261 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 texlive-latex-recommended all 2024.20240401-3 [8847 kB]
Get:262 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 texlive-pictures all 2024.20240401-3 [17.0 MB]
Get:263 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 texlive-latex-extra all 2024.20240401-2 [19.8 MB]
Get:264 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 xxd amd64 2:9.1.0496-1 [94.9 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 286 MB in 3min 8s (1522 kB/s)
Selecting previously unselected package liblocale-gettext-perl.
(Reading database ... 11946 files and directories currently installed.)
Preparing to unpack .../liblocale-gettext-perl_1.07-7_amd64.deb ...
Unpacking liblocale-gettext-perl (1.07-7) ...
Selecting previously unselected package poppler-data.
Preparing to unpack .../poppler-data_0.4.12-1_all.deb ...
Unpacking poppler-data (0.4.12-1) ...
Selecting previously unselected package libpython3.11-minimal:amd64.
Preparing to unpack .../libpython3.11-minimal_3.11.9-1_amd64.deb ...
Unpacking libpython3.11-minimal:amd64 (3.11.9-1) ...
Selecting previously unselected package libexpat1:amd64.
Preparing to unpack .../libexpat1_2.6.2-1_amd64.deb ...
Unpacking libexpat1:amd64 (2.6.2-1) ...
Selecting previously unselected package python3.11-minimal.
Preparing to unpack .../python3.11-minimal_3.11.9-1_amd64.deb ...
Unpacking python3.11-minimal (3.11.9-1) ...
Setting up libpython3.11-minimal:amd64 (3.11.9-1) ...
Setting up libexpat1:amd64 (2.6.2-1) ...
Setting up python3.11-minimal (3.11.9-1) ...
Selecting previously unselected package python3-minimal.
(Reading database ... 12810 files and directories currently installed.)
Preparing to unpack .../00-python3-minimal_3.11.8-1_amd64.deb ...
Unpacking python3-minimal (3.11.8-1) ...
Selecting previously unselected package media-types.
Preparing to unpack .../01-media-types_10.1.0_all.deb ...
Unpacking media-types (10.1.0) ...
Selecting previously unselected package netbase.
Preparing to unpack .../02-netbase_6.4_all.deb ...
Unpacking netbase (6.4) ...
Selecting previously unselected package tzdata.
Preparing to unpack .../03-tzdata_2024a-4_all.deb ...
Unpacking tzdata (2024a-4) ...
Selecting previously unselected package libncursesw6:amd64.
Preparing to unpack .../04-libncursesw6_6.5-2_amd64.deb ...
Unpacking libncursesw6:amd64 (6.5-2) ...
Selecting previously unselected package readline-common.
Preparing to unpack .../05-readline-common_8.2-4_all.deb ...
Unpacking readline-common (8.2-4) ...
Selecting previously unselected package libreadline8t64:amd64.
Preparing to unpack .../06-libreadline8t64_8.2-4_amd64.deb ...
Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64'
Unpacking libreadline8t64:amd64 (8.2-4) ...
Selecting previously unselected package libsqlite3-0:amd64.
Preparing to unpack .../07-libsqlite3-0_3.46.0-1_amd64.deb ...
Unpacking libsqlite3-0:amd64 (3.46.0-1) ...
Selecting previously unselected package libpython3.11-stdlib:amd64.
Preparing to unpack .../08-libpython3.11-stdlib_3.11.9-1_amd64.deb ...
Unpacking libpython3.11-stdlib:amd64 (3.11.9-1) ...
Selecting previously unselected package python3.11.
Preparing to unpack .../09-python3.11_3.11.9-1_amd64.deb ...
Unpacking python3.11 (3.11.9-1) ...
Selecting previously unselected package libpython3-stdlib:amd64.
Preparing to unpack .../10-libpython3-stdlib_3.11.8-1_amd64.deb ...
Unpacking libpython3-stdlib:amd64 (3.11.8-1) ...
Setting up python3-minimal (3.11.8-1) ...
Selecting previously unselected package python3.
(Reading database ... 13819 files and directories currently installed.)
Preparing to unpack .../000-python3_3.11.8-1_amd64.deb ...
Unpacking python3 (3.11.8-1) ...
Selecting previously unselected package sensible-utils.
Preparing to unpack .../001-sensible-utils_0.0.23_all.deb ...
Unpacking sensible-utils (0.0.23) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../002-libmagic-mgc_1%3a5.45-3_amd64.deb ...
Unpacking libmagic-mgc (1:5.45-3) ...
Selecting previously unselected package libmagic1t64:amd64.
Preparing to unpack .../003-libmagic1t64_1%3a5.45-3_amd64.deb ...
Unpacking libmagic1t64:amd64 (1:5.45-3) ...
Selecting previously unselected package file.
Preparing to unpack .../004-file_1%3a5.45-3_amd64.deb ...
Unpacking file (1:5.45-3) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../005-gettext-base_0.21-15_amd64.deb ...
Unpacking gettext-base (0.21-15) ...
Selecting previously unselected package libuchardet0:amd64.
Preparing to unpack .../006-libuchardet0_0.0.8-1+b1_amd64.deb ...
Unpacking libuchardet0:amd64 (0.0.8-1+b1) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../007-groff-base_1.23.0-4_amd64.deb ...
Unpacking groff-base (1.23.0-4) ...
Selecting previously unselected package bsdextrautils.
Preparing to unpack .../008-bsdextrautils_2.40.1-8.1_amd64.deb ...
Unpacking bsdextrautils (2.40.1-8.1) ...
Selecting previously unselected package libpipeline1:amd64.
Preparing to unpack .../009-libpipeline1_1.5.7-2_amd64.deb ...
Unpacking libpipeline1:amd64 (1.5.7-2) ...
Selecting previously unselected package man-db.
Preparing to unpack .../010-man-db_2.12.1-2_amd64.deb ...
Unpacking man-db (2.12.1-2) ...
Selecting previously unselected package ucf.
Preparing to unpack .../011-ucf_3.0043+nmu1_all.deb ...
Moving old data out of the way
Unpacking ucf (3.0043+nmu1) ...
Selecting previously unselected package m4.
Preparing to unpack .../012-m4_1.4.19-4_amd64.deb ...
Unpacking m4 (1.4.19-4) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../013-autoconf_2.71-3_all.deb ...
Unpacking autoconf (2.71-3) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../014-autotools-dev_20220109.1_all.deb ...
Unpacking autotools-dev (20220109.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../015-automake_1%3a1.16.5-1.3_all.deb ...
Unpacking automake (1:1.16.5-1.3) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../016-autopoint_0.21-15_all.deb ...
Unpacking autopoint (0.21-15) ...
Selecting previously unselected package cthreadpool-dev.
Preparing to unpack .../017-cthreadpool-dev_0.0+git20231218.4eb5a69-1_all.deb ...
Unpacking cthreadpool-dev (0.0+git20231218.4eb5a69-1) ...
Selecting previously unselected package libdebhelper-perl.
Preparing to unpack .../018-libdebhelper-perl_13.16_all.deb ...
Unpacking libdebhelper-perl (13.16) ...
Selecting previously unselected package libtool.
Preparing to unpack .../019-libtool_2.4.7-7_all.deb ...
Unpacking libtool (2.4.7-7) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../020-dh-autoreconf_20_all.deb ...
Unpacking dh-autoreconf (20) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../021-libarchive-zip-perl_1.68-1_all.deb ...
Unpacking libarchive-zip-perl (1.68-1) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../022-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../023-dh-strip-nondeterminism_1.14.0-1_all.deb ...
Unpacking dh-strip-nondeterminism (1.14.0-1) ...
Selecting previously unselected package libelf1t64:amd64.
Preparing to unpack .../024-libelf1t64_0.191-1+b1_amd64.deb ...
Unpacking libelf1t64:amd64 (0.191-1+b1) ...
Selecting previously unselected package dwz.
Preparing to unpack .../025-dwz_0.15-1+b1_amd64.deb ...
Unpacking dwz (0.15-1+b1) ...
Selecting previously unselected package libicu72:amd64.
Preparing to unpack .../026-libicu72_72.1-4+b1_amd64.deb ...
Unpacking libicu72:amd64 (72.1-4+b1) ...
Selecting previously unselected package libxml2:amd64.
Preparing to unpack .../027-libxml2_2.12.7+dfsg-3_amd64.deb ...
Unpacking libxml2:amd64 (2.12.7+dfsg-3) ...
Selecting previously unselected package gettext.
Preparing to unpack .../028-gettext_0.21-15_amd64.deb ...
Unpacking gettext (0.21-15) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../029-intltool-debian_0.35.0+20060710.6_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.6) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../030-po-debconf_1.0.21+nmu1_all.deb ...
Unpacking po-debconf (1.0.21+nmu1) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../031-debhelper_13.16_all.deb ...
Unpacking debhelper (13.16) ...
Selecting previously unselected package python3-pkg-resources.
Preparing to unpack .../032-python3-pkg-resources_68.1.2-2_all.deb ...
Unpacking python3-pkg-resources (68.1.2-2) ...
Selecting previously unselected package python3-lib2to3.
Preparing to unpack .../033-python3-lib2to3_3.12.3-3.1_all.deb ...
Unpacking python3-lib2to3 (3.12.3-3.1) ...
Selecting previously unselected package python3-distutils.
Preparing to unpack .../034-python3-distutils_3.12.3-3.1_all.deb ...
Unpacking python3-distutils (3.12.3-3.1) ...
Selecting previously unselected package python3-setuptools.
Preparing to unpack .../035-python3-setuptools_68.1.2-2_all.deb ...
Unpacking python3-setuptools (68.1.2-2) ...
Selecting previously unselected package dh-python.
Preparing to unpack .../036-dh-python_6.20240422_all.deb ...
Unpacking dh-python (6.20240422) ...
Selecting previously unselected package libedit2:amd64.
Preparing to unpack .../037-libedit2_3.1-20240517-1_amd64.deb ...
Unpacking libedit2:amd64 (3.1-20240517-1) ...
Selecting previously unselected package libz3-4:amd64.
Preparing to unpack .../038-libz3-4_4.8.12-3.1+b2_amd64.deb ...
Unpacking libz3-4:amd64 (4.8.12-3.1+b2) ...
Selecting previously unselected package libllvm16t64:amd64.
Preparing to unpack .../039-libllvm16t64_1%3a16.0.6-27_amd64.deb ...
Unpacking libllvm16t64:amd64 (1:16.0.6-27) ...
Selecting previously unselected package libclang-cpp16t64.
Preparing to unpack .../040-libclang-cpp16t64_1%3a16.0.6-27_amd64.deb ...
Unpacking libclang-cpp16t64 (1:16.0.6-27) ...
Selecting previously unselected package libclang1-16t64.
Preparing to unpack .../041-libclang1-16t64_1%3a16.0.6-27_amd64.deb ...
Unpacking libclang1-16t64 (1:16.0.6-27) ...
Selecting previously unselected package libfmt9:amd64.
Preparing to unpack .../042-libfmt9_9.1.0+ds1-2_amd64.deb ...
Unpacking libfmt9:amd64 (9.1.0+ds1-2) ...
Selecting previously unselected package libxapian30:amd64.
Preparing to unpack .../043-libxapian30_1.4.25-1_amd64.deb ...
Unpacking libxapian30:amd64 (1.4.25-1) ...
Selecting previously unselected package doxygen.
Preparing to unpack .../044-doxygen_1.9.8+ds-2+b1_amd64.deb ...
Unpacking doxygen (1.9.8+ds-2+b1) ...
Selecting previously unselected package libbrotli1:amd64.
Preparing to unpack .../045-libbrotli1_1.1.0-2+b3_amd64.deb ...
Unpacking libbrotli1:amd64 (1.1.0-2+b3) ...
Selecting previously unselected package libpng16-16t64:amd64.
Preparing to unpack .../046-libpng16-16t64_1.6.43-5_amd64.deb ...
Unpacking libpng16-16t64:amd64 (1.6.43-5) ...
Selecting previously unselected package libfreetype6:amd64.
Preparing to unpack .../047-libfreetype6_2.13.2+dfsg-1+b4_amd64.deb ...
Unpacking libfreetype6:amd64 (2.13.2+dfsg-1+b4) ...
Selecting previously unselected package fonts-dejavu-mono.
Preparing to unpack .../048-fonts-dejavu-mono_2.37-8_all.deb ...
Unpacking fonts-dejavu-mono (2.37-8) ...
Selecting previously unselected package fonts-dejavu-core.
Preparing to unpack .../049-fonts-dejavu-core_2.37-8_all.deb ...
Unpacking fonts-dejavu-core (2.37-8) ...
Selecting previously unselected package libfontenc1:amd64.
Preparing to unpack .../050-libfontenc1_1%3a1.1.8-1_amd64.deb ...
Unpacking libfontenc1:amd64 (1:1.1.8-1) ...
Selecting previously unselected package x11-common.
Preparing to unpack .../051-x11-common_1%3a7.7+23_all.deb ...
Unpacking x11-common (1:7.7+23) ...
Selecting previously unselected package xfonts-encodings.
Preparing to unpack .../052-xfonts-encodings_1%3a1.0.4-2.2_all.deb ...
Unpacking xfonts-encodings (1:1.0.4-2.2) ...
Selecting previously unselected package xfonts-utils.
Preparing to unpack .../053-xfonts-utils_1%3a7.7+6_amd64.deb ...
Unpacking xfonts-utils (1:7.7+6) ...
Selecting previously unselected package fonts-urw-base35.
Preparing to unpack .../054-fonts-urw-base35_20200910-8_all.deb ...
Unpacking fonts-urw-base35 (20200910-8) ...
Selecting previously unselected package fontconfig-config.
Preparing to unpack .../055-fontconfig-config_2.15.0-1.1_amd64.deb ...
Unpacking fontconfig-config (2.15.0-1.1) ...
Selecting previously unselected package libfontconfig1:amd64.
Preparing to unpack .../056-libfontconfig1_2.15.0-1.1_amd64.deb ...
Unpacking libfontconfig1:amd64 (2.15.0-1.1) ...
Selecting previously unselected package fontconfig.
Preparing to unpack .../057-fontconfig_2.15.0-1.1_amd64.deb ...
Unpacking fontconfig (2.15.0-1.1) ...
Selecting previously unselected package fonts-lmodern.
Preparing to unpack .../058-fonts-lmodern_2.005-1_all.deb ...
Unpacking fonts-lmodern (2.005-1) ...
Selecting previously unselected package gengetopt.
Preparing to unpack .../059-gengetopt_2.23+dfsg1-1_amd64.deb ...
Unpacking gengetopt (2.23+dfsg1-1) ...
Selecting previously unselected package libgs-common.
Preparing to unpack .../060-libgs-common_10.03.1~dfsg-1_all.deb ...
Unpacking libgs-common (10.03.1~dfsg-1) ...
Selecting previously unselected package libgs10-common.
Preparing to unpack .../061-libgs10-common_10.03.1~dfsg-1_all.deb ...
Unpacking libgs10-common (10.03.1~dfsg-1) ...
Selecting previously unselected package libavahi-common-data:amd64.
Preparing to unpack .../062-libavahi-common-data_0.8-13+b2_amd64.deb ...
Unpacking libavahi-common-data:amd64 (0.8-13+b2) ...
Selecting previously unselected package libavahi-common3:amd64.
Preparing to unpack .../063-libavahi-common3_0.8-13+b2_amd64.deb ...
Unpacking libavahi-common3:amd64 (0.8-13+b2) ...
Selecting previously unselected package libdbus-1-3:amd64.
Preparing to unpack .../064-libdbus-1-3_1.14.10-4+b1_amd64.deb ...
Unpacking libdbus-1-3:amd64 (1.14.10-4+b1) ...
Selecting previously unselected package libavahi-client3:amd64.
Preparing to unpack .../065-libavahi-client3_0.8-13+b2_amd64.deb ...
Unpacking libavahi-client3:amd64 (0.8-13+b2) ...
Selecting previously unselected package libkrb5support0:amd64.
Preparing to unpack .../066-libkrb5support0_1.21.2-1_amd64.deb ...
Unpacking libkrb5support0:amd64 (1.21.2-1) ...
Selecting previously unselected package libcom-err2:amd64.
Preparing to unpack .../067-libcom-err2_1.47.1-1_amd64.deb ...
Unpacking libcom-err2:amd64 (1.47.1-1) ...
Selecting previously unselected package libk5crypto3:amd64.
Preparing to unpack .../068-libk5crypto3_1.21.2-1_amd64.deb ...
Unpacking libk5crypto3:amd64 (1.21.2-1) ...
Selecting previously unselected package libkeyutils1:amd64.
Preparing to unpack .../069-libkeyutils1_1.6.3-3_amd64.deb ...
Unpacking libkeyutils1:amd64 (1.6.3-3) ...
Selecting previously unselected package libkrb5-3:amd64.
Preparing to unpack .../070-libkrb5-3_1.21.2-1_amd64.deb ...
Unpacking libkrb5-3:amd64 (1.21.2-1) ...
Selecting previously unselected package libgssapi-krb5-2:amd64.
Preparing to unpack .../071-libgssapi-krb5-2_1.21.2-1_amd64.deb ...
Unpacking libgssapi-krb5-2:amd64 (1.21.2-1) ...
Selecting previously unselected package libcups2t64:amd64.
Preparing to unpack .../072-libcups2t64_2.4.10-1_amd64.deb ...
Unpacking libcups2t64:amd64 (2.4.10-1) ...
Selecting previously unselected package libidn12:amd64.
Preparing to unpack .../073-libidn12_1.42-2_amd64.deb ...
Unpacking libidn12:amd64 (1.42-2) ...
Selecting previously unselected package libijs-0.35:amd64.
Preparing to unpack .../074-libijs-0.35_0.35-15.1+b1_amd64.deb ...
Unpacking libijs-0.35:amd64 (0.35-15.1+b1) ...
Selecting previously unselected package libjbig2dec0:amd64.
Preparing to unpack .../075-libjbig2dec0_0.20-1+b2_amd64.deb ...
Unpacking libjbig2dec0:amd64 (0.20-1+b2) ...
Selecting previously unselected package libjpeg62-turbo:amd64.
Preparing to unpack .../076-libjpeg62-turbo_1%3a2.1.5-3_amd64.deb ...
Unpacking libjpeg62-turbo:amd64 (1:2.1.5-3) ...
Selecting previously unselected package liblcms2-2:amd64.
Preparing to unpack .../077-liblcms2-2_2.14-2+b1_amd64.deb ...
Unpacking liblcms2-2:amd64 (2.14-2+b1) ...
Selecting previously unselected package libopenjp2-7:amd64.
Preparing to unpack .../078-libopenjp2-7_2.5.0-2+b3_amd64.deb ...
Unpacking libopenjp2-7:amd64 (2.5.0-2+b3) ...
Selecting previously unselected package libpaper1:amd64.
Preparing to unpack .../079-libpaper1_1.1.29+b1_amd64.deb ...
Unpacking libpaper1:amd64 (1.1.29+b1) ...
Selecting previously unselected package libdeflate0:amd64.
Preparing to unpack .../080-libdeflate0_1.20-1_amd64.deb ...
Unpacking libdeflate0:amd64 (1.20-1) ...
Selecting previously unselected package libjbig0:amd64.
Preparing to unpack .../081-libjbig0_2.1-6.1+b1_amd64.deb ...
Unpacking libjbig0:amd64 (2.1-6.1+b1) ...
Selecting previously unselected package liblerc4:amd64.
Preparing to unpack .../082-liblerc4_4.0.0+ds-4+b1_amd64.deb ...
Unpacking liblerc4:amd64 (4.0.0+ds-4+b1) ...
Selecting previously unselected package libsharpyuv0:amd64.
Preparing to unpack .../083-libsharpyuv0_1.4.0-0.1_amd64.deb ...
Unpacking libsharpyuv0:amd64 (1.4.0-0.1) ...
Selecting previously unselected package libwebp7:amd64.
Preparing to unpack .../084-libwebp7_1.4.0-0.1_amd64.deb ...
Unpacking libwebp7:amd64 (1.4.0-0.1) ...
Selecting previously unselected package libtiff6:amd64.
Preparing to unpack .../085-libtiff6_4.5.1+git230720-4_amd64.deb ...
Unpacking libtiff6:amd64 (4.5.1+git230720-4) ...
Selecting previously unselected package libxau6:amd64.
Preparing to unpack .../086-libxau6_1%3a1.0.9-1+b1_amd64.deb ...
Unpacking libxau6:amd64 (1:1.0.9-1+b1) ...
Selecting previously unselected package libxdmcp6:amd64.
Preparing to unpack .../087-libxdmcp6_1%3a1.1.2-3+b1_amd64.deb ...
Unpacking libxdmcp6:amd64 (1:1.1.2-3+b1) ...
Selecting previously unselected package libxcb1:amd64.
Preparing to unpack .../088-libxcb1_1.17.0-2_amd64.deb ...
Unpacking libxcb1:amd64 (1.17.0-2) ...
Selecting previously unselected package libx11-data.
Preparing to unpack .../089-libx11-data_2%3a1.8.7-1_all.deb ...
Unpacking libx11-data (2:1.8.7-1) ...
Selecting previously unselected package libx11-6:amd64.
Preparing to unpack .../090-libx11-6_2%3a1.8.7-1+b1_amd64.deb ...
Unpacking libx11-6:amd64 (2:1.8.7-1+b1) ...
Selecting previously unselected package libice6:amd64.
Preparing to unpack .../091-libice6_2%3a1.0.10-1+b1_amd64.deb ...
Unpacking libice6:amd64 (2:1.0.10-1+b1) ...
Selecting previously unselected package libsm6:amd64.
Preparing to unpack .../092-libsm6_2%3a1.2.3-1+b1_amd64.deb ...
Unpacking libsm6:amd64 (2:1.2.3-1+b1) ...
Selecting previously unselected package libxt6t64:amd64.
Preparing to unpack .../093-libxt6t64_1%3a1.2.1-1.2_amd64.deb ...
Unpacking libxt6t64:amd64 (1:1.2.1-1.2) ...
Selecting previously unselected package libgs10:amd64.
Preparing to unpack .../094-libgs10_10.03.1~dfsg-1_amd64.deb ...
Unpacking libgs10:amd64 (10.03.1~dfsg-1) ...
Selecting previously unselected package ghostscript.
Preparing to unpack .../095-ghostscript_10.03.1~dfsg-1_amd64.deb ...
Unpacking ghostscript (10.03.1~dfsg-1) ...
Selecting previously unselected package libann0.
Preparing to unpack .../096-libann0_1.1.2+doc-9+b1_amd64.deb ...
Unpacking libann0 (1.1.2+doc-9+b1) ...
Selecting previously unselected package libcdt5:amd64.
Preparing to unpack .../097-libcdt5_2.42.2-9+b1_amd64.deb ...
Unpacking libcdt5:amd64 (2.42.2-9+b1) ...
Selecting previously unselected package libcgraph6:amd64.
Preparing to unpack .../098-libcgraph6_2.42.2-9+b1_amd64.deb ...
Unpacking libcgraph6:amd64 (2.42.2-9+b1) ...
Selecting previously unselected package libaom3:amd64.
Preparing to unpack .../099-libaom3_3.8.2-3_amd64.deb ...
Unpacking libaom3:amd64 (3.8.2-3) ...
Selecting previously unselected package libdav1d7:amd64.
Preparing to unpack .../100-libdav1d7_1.4.2-1_amd64.deb ...
Unpacking libdav1d7:amd64 (1.4.2-1) ...
Selecting previously unselected package libabsl20230802:amd64.
Preparing to unpack .../101-libabsl20230802_20230802.1-4_amd64.deb ...
Unpacking libabsl20230802:amd64 (20230802.1-4) ...
Selecting previously unselected package libgav1-1:amd64.
Preparing to unpack .../102-libgav1-1_0.19.0-2+b1_amd64.deb ...
Unpacking libgav1-1:amd64 (0.19.0-2+b1) ...
Selecting previously unselected package librav1e0:amd64.
Preparing to unpack .../103-librav1e0_0.7.1-2_amd64.deb ...
Unpacking librav1e0:amd64 (0.7.1-2) ...
Selecting previously unselected package libsvtav1enc1d1:amd64.
Preparing to unpack .../104-libsvtav1enc1d1_1.7.0+dfsg-2+b1_amd64.deb ...
Unpacking libsvtav1enc1d1:amd64 (1.7.0+dfsg-2+b1) ...
Selecting previously unselected package libyuv0:amd64.
Preparing to unpack .../105-libyuv0_0.0.1888.20240607-1_amd64.deb ...
Unpacking libyuv0:amd64 (0.0.1888.20240607-1) ...
Selecting previously unselected package libavif16:amd64.
Preparing to unpack .../106-libavif16_1.0.4-3_amd64.deb ...
Unpacking libavif16:amd64 (1.0.4-3) ...
Selecting previously unselected package libheif-plugin-dav1d:amd64.
Preparing to unpack .../107-libheif-plugin-dav1d_1.17.6-3+b1_amd64.deb ...
Unpacking libheif-plugin-dav1d:amd64 (1.17.6-3+b1) ...
Selecting previously unselected package libde265-0:amd64.
Preparing to unpack .../108-libde265-0_1.0.15-1+b1_amd64.deb ...
Unpacking libde265-0:amd64 (1.0.15-1+b1) ...
Selecting previously unselected package libheif-plugin-libde265:amd64.
Preparing to unpack .../109-libheif-plugin-libde265_1.17.6-3+b1_amd64.deb ...
Unpacking libheif-plugin-libde265:amd64 (1.17.6-3+b1) ...
Selecting previously unselected package libheif1:amd64.
Preparing to unpack .../110-libheif1_1.17.6-3+b1_amd64.deb ...
Unpacking libheif1:amd64 (1.17.6-3+b1) ...
Selecting previously unselected package libxpm4:amd64.
Preparing to unpack .../111-libxpm4_1%3a3.5.17-1+b1_amd64.deb ...
Unpacking libxpm4:amd64 (1:3.5.17-1+b1) ...
Selecting previously unselected package libgd3:amd64.
Preparing to unpack .../112-libgd3_2.3.3-9+b3_amd64.deb ...
Unpacking libgd3:amd64 (2.3.3-9+b3) ...
Selecting previously unselected package libglib2.0-0t64:amd64.
Preparing to unpack .../113-libglib2.0-0t64_2.80.3-1_amd64.deb ...
Unpacking libglib2.0-0t64:amd64 (2.80.3-1) ...
Selecting previously unselected package libgts-0.7-5t64:amd64.
Preparing to unpack .../114-libgts-0.7-5t64_0.7.6+darcs121130-5.2_amd64.deb ...
Unpacking libgts-0.7-5t64:amd64 (0.7.6+darcs121130-5.2) ...
Selecting previously unselected package libpixman-1-0:amd64.
Preparing to unpack .../115-libpixman-1-0_0.42.2-1+b1_amd64.deb ...
Unpacking libpixman-1-0:amd64 (0.42.2-1+b1) ...
Selecting previously unselected package libxcb-render0:amd64.
Preparing to unpack .../116-libxcb-render0_1.17.0-2_amd64.deb ...
Unpacking libxcb-render0:amd64 (1.17.0-2) ...
Selecting previously unselected package libxcb-shm0:amd64.
Preparing to unpack .../117-libxcb-shm0_1.17.0-2_amd64.deb ...
Unpacking libxcb-shm0:amd64 (1.17.0-2) ...
Selecting previously unselected package libxext6:amd64.
Preparing to unpack .../118-libxext6_2%3a1.3.4-1+b1_amd64.deb ...
Unpacking libxext6:amd64 (2:1.3.4-1+b1) ...
Selecting previously unselected package libxrender1:amd64.
Preparing to unpack .../119-libxrender1_1%3a0.9.10-1.1+b1_amd64.deb ...
Unpacking libxrender1:amd64 (1:0.9.10-1.1+b1) ...
Selecting previously unselected package libcairo2:amd64.
Preparing to unpack .../120-libcairo2_1.18.0-3+b1_amd64.deb ...
Unpacking libcairo2:amd64 (1.18.0-3+b1) ...
Selecting previously unselected package libltdl7:amd64.
Preparing to unpack .../121-libltdl7_2.4.7-7+b1_amd64.deb ...
Unpacking libltdl7:amd64 (2.4.7-7+b1) ...
Selecting previously unselected package libfribidi0:amd64.
Preparing to unpack .../122-libfribidi0_1.0.13-3+b1_amd64.deb ...
Unpacking libfribidi0:amd64 (1.0.13-3+b1) ...
Selecting previously unselected package libgraphite2-3:amd64.
Preparing to unpack .../123-libgraphite2-3_1.3.14-2_amd64.deb ...
Unpacking libgraphite2-3:amd64 (1.3.14-2) ...
Selecting previously unselected package libharfbuzz0b:amd64.
Preparing to unpack .../124-libharfbuzz0b_8.3.0-2+b1_amd64.deb ...
Unpacking libharfbuzz0b:amd64 (8.3.0-2+b1) ...
Selecting previously unselected package libthai-data.
Preparing to unpack .../125-libthai-data_0.1.29-2_all.deb ...
Unpacking libthai-data (0.1.29-2) ...
Selecting previously unselected package libdatrie1:amd64.
Preparing to unpack .../126-libdatrie1_0.2.13-3_amd64.deb ...
Unpacking libdatrie1:amd64 (0.2.13-3) ...
Selecting previously unselected package libthai0:amd64.
Preparing to unpack .../127-libthai0_0.1.29-2_amd64.deb ...
Unpacking libthai0:amd64 (0.1.29-2) ...
Selecting previously unselected package libpango-1.0-0:amd64.
Preparing to unpack .../128-libpango-1.0-0_1.54.0+ds-1_amd64.deb ...
Unpacking libpango-1.0-0:amd64 (1.54.0+ds-1) ...
Selecting previously unselected package libpangoft2-1.0-0:amd64.
Preparing to unpack .../129-libpangoft2-1.0-0_1.54.0+ds-1_amd64.deb ...
Unpacking libpangoft2-1.0-0:amd64 (1.54.0+ds-1) ...
Selecting previously unselected package libpangocairo-1.0-0:amd64.
Preparing to unpack .../130-libpangocairo-1.0-0_1.54.0+ds-1_amd64.deb ...
Unpacking libpangocairo-1.0-0:amd64 (1.54.0+ds-1) ...
Selecting previously unselected package libpathplan4:amd64.
Preparing to unpack .../131-libpathplan4_2.42.2-9+b1_amd64.deb ...
Unpacking libpathplan4:amd64 (2.42.2-9+b1) ...
Selecting previously unselected package libgvc6.
Preparing to unpack .../132-libgvc6_2.42.2-9+b1_amd64.deb ...
Unpacking libgvc6 (2.42.2-9+b1) ...
Selecting previously unselected package libgvpr2:amd64.
Preparing to unpack .../133-libgvpr2_2.42.2-9+b1_amd64.deb ...
Unpacking libgvpr2:amd64 (2.42.2-9+b1) ...
Selecting previously unselected package liblab-gamut1:amd64.
Preparing to unpack .../134-liblab-gamut1_2.42.2-9+b1_amd64.deb ...
Unpacking liblab-gamut1:amd64 (2.42.2-9+b1) ...
Selecting previously unselected package libxmu6:amd64.
Preparing to unpack .../135-libxmu6_2%3a1.1.3-3+b2_amd64.deb ...
Unpacking libxmu6:amd64 (2:1.1.3-3+b2) ...
Selecting previously unselected package libxaw7:amd64.
Preparing to unpack .../136-libxaw7_2%3a1.0.14-1+b2_amd64.deb ...
Unpacking libxaw7:amd64 (2:1.0.14-1+b2) ...
Selecting previously unselected package graphviz.
Preparing to unpack .../137-graphviz_2.42.2-9+b1_amd64.deb ...
Unpacking graphviz (2.42.2-9+b1) ...
Selecting previously unselected package help2man.
Preparing to unpack .../138-help2man_1.49.3_amd64.deb ...
Unpacking help2man (1.49.3) ...
Selecting previously unselected package libapache-pom-java.
Preparing to unpack .../139-libapache-pom-java_29-2_all.deb ...
Unpacking libapache-pom-java (29-2) ...
Selecting previously unselected package libblas3:amd64.
Preparing to unpack .../140-libblas3_3.12.0-3_amd64.deb ...
Unpacking libblas3:amd64 (3.12.0-3) ...
Selecting previously unselected package libblas-dev:amd64.
Preparing to unpack .../141-libblas-dev_3.12.0-3_amd64.deb ...
Unpacking libblas-dev:amd64 (3.12.0-3) ...
Selecting previously unselected package libcommons-parent-java.
Preparing to unpack .../142-libcommons-parent-java_56-1_all.deb ...
Unpacking libcommons-parent-java (56-1) ...
Selecting previously unselected package libcommons-logging-java.
Preparing to unpack .../143-libcommons-logging-java_1.3.0-1_all.deb ...
Unpacking libcommons-logging-java (1.3.0-1) ...
Selecting previously unselected package libdlib-data.
Preparing to unpack .../144-libdlib-data_19.24.4+dfsg-1_all.deb ...
Unpacking libdlib-data (19.24.4+dfsg-1) ...
Selecting previously unselected package libgfortran5:amd64.
Preparing to unpack .../145-libgfortran5_14.1.0-2_amd64.deb ...
Unpacking libgfortran5:amd64 (14.1.0-2) ...
Selecting previously unselected package liblapack3:amd64.
Preparing to unpack .../146-liblapack3_3.12.0-3_amd64.deb ...
Unpacking liblapack3:amd64 (3.12.0-3) ...
Selecting previously unselected package libdlib19.2:amd64.
Preparing to unpack .../147-libdlib19.2_19.24.4+dfsg-1_amd64.deb ...
Unpacking libdlib19.2:amd64 (19.24.4+dfsg-1) ...
Selecting previously unselected package libglvnd0:amd64.
Preparing to unpack .../148-libglvnd0_1.7.0-1+b1_amd64.deb ...
Unpacking libglvnd0:amd64 (1.7.0-1+b1) ...
Selecting previously unselected package libdrm-common.
Preparing to unpack .../149-libdrm-common_2.4.121-2_all.deb ...
Unpacking libdrm-common (2.4.121-2) ...
Selecting previously unselected package libdrm2:amd64.
Preparing to unpack .../150-libdrm2_2.4.121-2_amd64.deb ...
Unpacking libdrm2:amd64 (2.4.121-2) ...
Selecting previously unselected package libglapi-mesa:amd64.
Preparing to unpack .../151-libglapi-mesa_24.1.1-2_amd64.deb ...
Unpacking libglapi-mesa:amd64 (24.1.1-2) ...
Selecting previously unselected package libx11-xcb1:amd64.
Preparing to unpack .../152-libx11-xcb1_2%3a1.8.7-1+b1_amd64.deb ...
Unpacking libx11-xcb1:amd64 (2:1.8.7-1+b1) ...
Selecting previously unselected package libxcb-dri2-0:amd64.
Preparing to unpack .../153-libxcb-dri2-0_1.17.0-2_amd64.deb ...
Unpacking libxcb-dri2-0:amd64 (1.17.0-2) ...
Selecting previously unselected package libxcb-dri3-0:amd64.
Preparing to unpack .../154-libxcb-dri3-0_1.17.0-2_amd64.deb ...
Unpacking libxcb-dri3-0:amd64 (1.17.0-2) ...
Selecting previously unselected package libxcb-glx0:amd64.
Preparing to unpack .../155-libxcb-glx0_1.17.0-2_amd64.deb ...
Unpacking libxcb-glx0:amd64 (1.17.0-2) ...
Selecting previously unselected package libxcb-present0:amd64.
Preparing to unpack .../156-libxcb-present0_1.17.0-2_amd64.deb ...
Unpacking libxcb-present0:amd64 (1.17.0-2) ...
Selecting previously unselected package libxcb-randr0:amd64.
Preparing to unpack .../157-libxcb-randr0_1.17.0-2_amd64.deb ...
Unpacking libxcb-randr0:amd64 (1.17.0-2) ...
Selecting previously unselected package libxcb-sync1:amd64.
Preparing to unpack .../158-libxcb-sync1_1.17.0-2_amd64.deb ...
Unpacking libxcb-sync1:amd64 (1.17.0-2) ...
Selecting previously unselected package libxcb-xfixes0:amd64.
Preparing to unpack .../159-libxcb-xfixes0_1.17.0-2_amd64.deb ...
Unpacking libxcb-xfixes0:amd64 (1.17.0-2) ...
Selecting previously unselected package libxfixes3:amd64.
Preparing to unpack .../160-libxfixes3_1%3a6.0.0-2+b1_amd64.deb ...
Unpacking libxfixes3:amd64 (1:6.0.0-2+b1) ...
Selecting previously unselected package libxshmfence1:amd64.
Preparing to unpack .../161-libxshmfence1_1.3-1+b1_amd64.deb ...
Unpacking libxshmfence1:amd64 (1.3-1+b1) ...
Selecting previously unselected package libxxf86vm1:amd64.
Preparing to unpack .../162-libxxf86vm1_1%3a1.1.4-1+b2_amd64.deb ...
Unpacking libxxf86vm1:amd64 (1:1.1.4-1+b2) ...
Selecting previously unselected package libvulkan1:amd64.
Preparing to unpack .../163-libvulkan1_1.3.283.0-1_amd64.deb ...
Unpacking libvulkan1:amd64 (1.3.283.0-1) ...
Selecting previously unselected package libdrm-amdgpu1:amd64.
Preparing to unpack .../164-libdrm-amdgpu1_2.4.121-2_amd64.deb ...
Unpacking libdrm-amdgpu1:amd64 (2.4.121-2) ...
Selecting previously unselected package libpciaccess0:amd64.
Preparing to unpack .../165-libpciaccess0_0.17-3+b1_amd64.deb ...
Unpacking libpciaccess0:amd64 (0.17-3+b1) ...
Selecting previously unselected package libdrm-intel1:amd64.
Preparing to unpack .../166-libdrm-intel1_2.4.121-2_amd64.deb ...
Unpacking libdrm-intel1:amd64 (2.4.121-2) ...
Selecting previously unselected package libdrm-radeon1:amd64.
Preparing to unpack .../167-libdrm-radeon1_2.4.121-2_amd64.deb ...
Unpacking libdrm-radeon1:amd64 (2.4.121-2) ...
Selecting previously unselected package libllvm17t64:amd64.
Preparing to unpack .../168-libllvm17t64_1%3a17.0.6-12_amd64.deb ...
Unpacking libllvm17t64:amd64 (1:17.0.6-12) ...
Selecting previously unselected package libsensors-config.
Preparing to unpack .../169-libsensors-config_1%3a3.6.0-10_all.deb ...
Unpacking libsensors-config (1:3.6.0-10) ...
Selecting previously unselected package libsensors5:amd64.
Preparing to unpack .../170-libsensors5_1%3a3.6.0-10_amd64.deb ...
Unpacking libsensors5:amd64 (1:3.6.0-10) ...
Selecting previously unselected package libgl1-mesa-dri:amd64.
Preparing to unpack .../171-libgl1-mesa-dri_24.1.1-2_amd64.deb ...
Unpacking libgl1-mesa-dri:amd64 (24.1.1-2) ...
Selecting previously unselected package libglx-mesa0:amd64.
Preparing to unpack .../172-libglx-mesa0_24.1.1-2_amd64.deb ...
Unpacking libglx-mesa0:amd64 (24.1.1-2) ...
Selecting previously unselected package libglx0:amd64.
Preparing to unpack .../173-libglx0_1.7.0-1+b1_amd64.deb ...
Unpacking libglx0:amd64 (1.7.0-1+b1) ...
Selecting previously unselected package libtbbmalloc2:amd64.
Preparing to unpack .../174-libtbbmalloc2_2021.11.0-2_amd64.deb ...
Unpacking libtbbmalloc2:amd64 (2021.11.0-2) ...
Selecting previously unselected package libhwloc15:amd64.
Preparing to unpack .../175-libhwloc15_2.10.0-1+b1_amd64.deb ...
Unpacking libhwloc15:amd64 (2.10.0-1+b1) ...
Selecting previously unselected package libtbbbind-2-5:amd64.
Preparing to unpack .../176-libtbbbind-2-5_2021.11.0-2_amd64.deb ...
Unpacking libtbbbind-2-5:amd64 (2021.11.0-2) ...
Selecting previously unselected package libtbb12:amd64.
Preparing to unpack .../177-libtbb12_2021.11.0-2_amd64.deb ...
Unpacking libtbb12:amd64 (2021.11.0-2) ...
Selecting previously unselected package libopencv-core406t64:amd64.
Preparing to unpack .../178-libopencv-core406t64_4.6.0+dfsg-13.1+b4_amd64.deb ...
Unpacking libopencv-core406t64:amd64 (4.6.0+dfsg-13.1+b4) ...
Selecting previously unselected package libtbb-dev:amd64.
Preparing to unpack .../179-libtbb-dev_2021.11.0-2_amd64.deb ...
Unpacking libtbb-dev:amd64 (2021.11.0-2) ...
Selecting previously unselected package zlib1g-dev:amd64.
Preparing to unpack .../180-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1_amd64.deb ...
Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1) ...
Selecting previously unselected package libopencv-core-dev:amd64.
Preparing to unpack .../181-libopencv-core-dev_4.6.0+dfsg-13.1+b4_amd64.deb ...
Unpacking libopencv-core-dev:amd64 (4.6.0+dfsg-13.1+b4) ...
Selecting previously unselected package libpng-dev:amd64.
Preparing to unpack .../182-libpng-dev_1.6.43-5_amd64.deb ...
Unpacking libpng-dev:amd64 (1.6.43-5) ...
Selecting previously unselected package libsqlite3-dev:amd64.
Preparing to unpack .../183-libsqlite3-dev_3.46.0-1_amd64.deb ...
Unpacking libsqlite3-dev:amd64 (3.46.0-1) ...
Selecting previously unselected package xorg-sgml-doctools.
Preparing to unpack .../184-xorg-sgml-doctools_1%3a1.11-1.1_all.deb ...
Unpacking xorg-sgml-doctools (1:1.11-1.1) ...
Selecting previously unselected package x11proto-dev.
Preparing to unpack .../185-x11proto-dev_2024.1-1_all.deb ...
Unpacking x11proto-dev (2024.1-1) ...
Selecting previously unselected package libxau-dev:amd64.
Preparing to unpack .../186-libxau-dev_1%3a1.0.9-1+b1_amd64.deb ...
Unpacking libxau-dev:amd64 (1:1.0.9-1+b1) ...
Selecting previously unselected package libxdmcp-dev:amd64.
Preparing to unpack .../187-libxdmcp-dev_1%3a1.1.2-3+b1_amd64.deb ...
Unpacking libxdmcp-dev:amd64 (1:1.1.2-3+b1) ...
Selecting previously unselected package xtrans-dev.
Preparing to unpack .../188-xtrans-dev_1.4.0-1_all.deb ...
Unpacking xtrans-dev (1.4.0-1) ...
Selecting previously unselected package libxcb1-dev:amd64.
Preparing to unpack .../189-libxcb1-dev_1.17.0-2_amd64.deb ...
Unpacking libxcb1-dev:amd64 (1.17.0-2) ...
Selecting previously unselected package libx11-dev:amd64.
Preparing to unpack .../190-libx11-dev_2%3a1.8.7-1+b1_amd64.deb ...
Unpacking libx11-dev:amd64 (2:1.8.7-1+b1) ...
Selecting previously unselected package libpython3.11t64:amd64.
Preparing to unpack .../191-libpython3.11t64_3.11.9-1_amd64.deb ...
Unpacking libpython3.11t64:amd64 (3.11.9-1) ...
Selecting previously unselected package libexpat1-dev:amd64.
Preparing to unpack .../192-libexpat1-dev_2.6.2-1_amd64.deb ...
Unpacking libexpat1-dev:amd64 (2.6.2-1) ...
Selecting previously unselected package libpython3.11-dev:amd64.
Preparing to unpack .../193-libpython3.11-dev_3.11.9-1_amd64.deb ...
Unpacking libpython3.11-dev:amd64 (3.11.9-1) ...
Selecting previously unselected package libpython3-dev:amd64.
Preparing to unpack .../194-libpython3-dev_3.11.8-1_amd64.deb ...
Unpacking libpython3-dev:amd64 (3.11.8-1) ...
Selecting previously unselected package pybind11-dev.
Preparing to unpack .../195-pybind11-dev_2.12.0-1_all.deb ...
Unpacking pybind11-dev (2.12.0-1) ...
Selecting previously unselected package libdlib-dev:amd64.
Preparing to unpack .../196-libdlib-dev_19.24.4+dfsg-1_amd64.deb ...
Unpacking libdlib-dev:amd64 (19.24.4+dfsg-1) ...
Selecting previously unselected package libfontbox-java.
Preparing to unpack .../197-libfontbox-java_1%3a1.8.16-5_all.deb ...
Unpacking libfontbox-java (1:1.8.16-5) ...
Selecting previously unselected package libgmpxx4ldbl:amd64.
Preparing to unpack .../198-libgmpxx4ldbl_2%3a6.3.0+dfsg-2+b1_amd64.deb ...
Unpacking libgmpxx4ldbl:amd64 (2:6.3.0+dfsg-2+b1) ...
Selecting previously unselected package libgmp-dev:amd64.
Preparing to unpack .../199-libgmp-dev_2%3a6.3.0+dfsg-2+b1_amd64.deb ...
Unpacking libgmp-dev:amd64 (2:6.3.0+dfsg-2+b1) ...
Selecting previously unselected package libgslcblas0:amd64.
Preparing to unpack .../200-libgslcblas0_2.7.1+dfsg-6+b1_amd64.deb ...
Unpacking libgslcblas0:amd64 (2.7.1+dfsg-6+b1) ...
Selecting previously unselected package libgsl27:amd64.
Preparing to unpack .../201-libgsl27_2.7.1+dfsg-6+b1_amd64.deb ...
Unpacking libgsl27:amd64 (2.7.1+dfsg-6+b1) ...
Selecting previously unselected package libgsl-dev.
Preparing to unpack .../202-libgsl-dev_2.7.1+dfsg-6+b1_amd64.deb ...
Unpacking libgsl-dev (2.7.1+dfsg-6+b1) ...
Selecting previously unselected package libjs-jquery.
Preparing to unpack .../203-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ...
Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
Selecting previously unselected package libjs-underscore.
Preparing to unpack .../204-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ...
Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ...
Selecting previously unselected package libjs-sphinxdoc.
Preparing to unpack .../205-libjs-sphinxdoc_7.2.6-9_all.deb ...
Unpacking libjs-sphinxdoc (7.2.6-9) ...
Selecting previously unselected package libkpathsea6:amd64.
Preparing to unpack .../206-libkpathsea6_2024.20240313.70630+ds-2_amd64.deb ...
Unpacking libkpathsea6:amd64 (2024.20240313.70630+ds-2) ...
Selecting previously unselected package liblapack-dev:amd64.
Preparing to unpack .../207-liblapack-dev_3.12.0-3_amd64.deb ...
Unpacking liblapack-dev:amd64 (3.12.0-3) ...
Selecting previously unselected package libmpfi0:amd64.
Preparing to unpack .../208-libmpfi0_1.5.4+ds-3_amd64.deb ...
Unpacking libmpfi0:amd64 (1.5.4+ds-3) ...
Selecting previously unselected package libmpfr-dev:amd64.
Preparing to unpack .../209-libmpfr-dev_4.2.1-1+b1_amd64.deb ...
Unpacking libmpfr-dev:amd64 (4.2.1-1+b1) ...
Selecting previously unselected package libpaper-utils.
Preparing to unpack .../210-libpaper-utils_1.1.29+b1_amd64.deb ...
Unpacking libpaper-utils (1.1.29+b1) ...
Selecting previously unselected package libpdfbox-java.
Preparing to unpack .../211-libpdfbox-java_1%3a1.8.16-5_all.deb ...
Unpacking libpdfbox-java (1:1.8.16-5) ...
Selecting previously unselected package libpkgconf3:amd64.
Preparing to unpack .../212-libpkgconf3_1.8.1-3_amd64.deb ...
Unpacking libpkgconf3:amd64 (1.8.1-3) ...
Selecting previously unselected package libpotrace0:amd64.
Preparing to unpack .../213-libpotrace0_1.16-2+b1_amd64.deb ...
Unpacking libpotrace0:amd64 (1.16-2+b1) ...
Selecting previously unselected package libptexenc1:amd64.
Preparing to unpack .../214-libptexenc1_2024.20240313.70630+ds-2_amd64.deb ...
Unpacking libptexenc1:amd64 (2024.20240313.70630+ds-2) ...
Selecting previously unselected package libsvm3:amd64.
Preparing to unpack .../215-libsvm3_3.24+ds-6+b1_amd64.deb ...
Unpacking libsvm3:amd64 (3.24+ds-6+b1) ...
Selecting previously unselected package libsvm-dev:amd64.
Preparing to unpack .../216-libsvm-dev_3.24+ds-6+b1_amd64.deb ...
Unpacking libsvm-dev:amd64 (3.24+ds-6+b1) ...
Selecting previously unselected package libsynctex2:amd64.
Preparing to unpack .../217-libsynctex2_2024.20240313.70630+ds-2_amd64.deb ...
Unpacking libsynctex2:amd64 (2024.20240313.70630+ds-2) ...
Selecting previously unselected package libteckit0:amd64.
Preparing to unpack .../218-libteckit0_2.5.12+ds1-1_amd64.deb ...
Unpacking libteckit0:amd64 (2.5.12+ds1-1) ...
Selecting previously unselected package libtexlua53-5:amd64.
Preparing to unpack .../219-libtexlua53-5_2024.20240313.70630+ds-2_amd64.deb ...
Unpacking libtexlua53-5:amd64 (2024.20240313.70630+ds-2) ...
Selecting previously unselected package libtext-unidecode-perl.
Preparing to unpack .../220-libtext-unidecode-perl_1.30-3_all.deb ...
Unpacking libtext-unidecode-perl (1.30-3) ...
Selecting previously unselected package libxi6:amd64.
Preparing to unpack .../221-libxi6_2%3a1.8.1-1_amd64.deb ...
Unpacking libxi6:amd64 (2:1.8.1-1) ...
Selecting previously unselected package libxml-namespacesupport-perl.
Preparing to unpack .../222-libxml-namespacesupport-perl_1.12-2_all.deb ...
Unpacking libxml-namespacesupport-perl (1.12-2) ...
Selecting previously unselected package libxml-sax-base-perl.
Preparing to unpack .../223-libxml-sax-base-perl_1.09-3_all.deb ...
Unpacking libxml-sax-base-perl (1.09-3) ...
Selecting previously unselected package libxml-sax-perl.
Preparing to unpack .../224-libxml-sax-perl_1.02+dfsg-3_all.deb ...
Unpacking libxml-sax-perl (1.02+dfsg-3) ...
Selecting previously unselected package libxml-libxml-perl.
Preparing to unpack .../225-libxml-libxml-perl_2.0207+dfsg+really+2.0134-3.1_amd64.deb ...
Unpacking libxml-libxml-perl (2.0207+dfsg+really+2.0134-3.1) ...
Selecting previously unselected package libzzip-0-13t64:amd64.
Preparing to unpack .../226-libzzip-0-13t64_0.13.72+dfsg.1-1.2+b1_amd64.deb ...
Unpacking libzzip-0-13t64:amd64 (0.13.72+dfsg.1-1.2+b1) ...
Selecting previously unselected package perl-doc.
Preparing to unpack .../227-perl-doc_5.38.2-5_all.deb ...
Adding 'diversion of /usr/bin/perldoc to /usr/bin/perldoc.stub by perl-doc'
Unpacking perl-doc (5.38.2-5) ...
Selecting previously unselected package pkgconf-bin.
Preparing to unpack .../228-pkgconf-bin_1.8.1-3_amd64.deb ...
Unpacking pkgconf-bin (1.8.1-3) ...
Selecting previously unselected package pkgconf:amd64.
Preparing to unpack .../229-pkgconf_1.8.1-3_amd64.deb ...
Unpacking pkgconf:amd64 (1.8.1-3) ...
Selecting previously unselected package pkg-config:amd64.
Preparing to unpack .../230-pkg-config_1.8.1-3_amd64.deb ...
Unpacking pkg-config:amd64 (1.8.1-3) ...
Selecting previously unselected package tex-common.
Preparing to unpack .../231-tex-common_6.18_all.deb ...
Unpacking tex-common (6.18) ...
Selecting previously unselected package preview-latex-style.
Preparing to unpack .../232-preview-latex-style_13.2-1_all.deb ...
Unpacking preview-latex-style (13.2-1) ...
Selecting previously unselected package python3.11-dev.
Preparing to unpack .../233-python3.11-dev_3.11.9-1_amd64.deb ...
Unpacking python3.11-dev (3.11.9-1) ...
Selecting previously unselected package python3-dev.
Preparing to unpack .../234-python3-dev_3.11.8-1_amd64.deb ...
Unpacking python3-dev (3.11.8-1) ...
Selecting previously unselected package swig.
Preparing to unpack .../235-swig_4.2.1-1_amd64.deb ...
Unpacking swig (4.2.1-1) ...
Selecting previously unselected package t1utils.
Preparing to unpack .../236-t1utils_1.41-4_amd64.deb ...
Unpacking t1utils (1.41-4) ...
Selecting previously unselected package texinfo-lib.
Preparing to unpack .../237-texinfo-lib_7.1-3+b1_amd64.deb ...
Unpacking texinfo-lib (7.1-3+b1) ...
Selecting previously unselected package texinfo.
Preparing to unpack .../238-texinfo_7.1-3_all.deb ...
Unpacking texinfo (7.1-3) ...
Selecting previously unselected package texlive-binaries.
Preparing to unpack .../239-texlive-binaries_2024.20240313.70630+ds-2_amd64.deb ...
Unpacking texlive-binaries (2024.20240313.70630+ds-2) ...
Selecting previously unselected package xdg-utils.
Preparing to unpack .../240-xdg-utils_1.1.3-4.1_all.deb ...
Unpacking xdg-utils (1.1.3-4.1) ...
Selecting previously unselected package texlive-base.
Preparing to unpack .../241-texlive-base_2024.20240401-3_all.deb ...
Unpacking texlive-base (2024.20240401-3) ...
Selecting previously unselected package texlive-latex-base.
Preparing to unpack .../242-texlive-latex-base_2024.20240401-3_all.deb ...
Unpacking texlive-latex-base (2024.20240401-3) ...
Selecting previously unselected package texlive-latex-recommended.
Preparing to unpack .../243-texlive-latex-recommended_2024.20240401-3_all.deb ...
Unpacking texlive-latex-recommended (2024.20240401-3) ...
Selecting previously unselected package texlive-pictures.
Preparing to unpack .../244-texlive-pictures_2024.20240401-3_all.deb ...
Unpacking texlive-pictures (2024.20240401-3) ...
Selecting previously unselected package texlive-latex-extra.
Preparing to unpack .../245-texlive-latex-extra_2024.20240401-2_all.deb ...
Unpacking texlive-latex-extra (2024.20240401-2) ...
Selecting previously unselected package xxd.
Preparing to unpack .../246-xxd_2%3a9.1.0496-1_amd64.deb ...
Unpacking xxd (2:9.1.0496-1) ...
Selecting previously unselected package sbuild-build-depends-main-dummy.
Preparing to unpack .../247-sbuild-build-depends-main-dummy_0.invalid.0_amd64.deb ...
Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ...
Setting up media-types (10.1.0) ...
Setting up libpipeline1:amd64 (1.5.7-2) ...
Setting up libgraphite2-3:amd64 (1.3.14-2) ...
Setting up liblcms2-2:amd64 (2.14-2+b1) ...
Setting up libtbbmalloc2:amd64 (2021.11.0-2) ...
Setting up libpixman-1-0:amd64 (0.42.2-1+b1) ...
Setting up libxapian30:amd64 (1.4.25-1) ...
Setting up libsharpyuv0:amd64 (1.4.0-0.1) ...
Setting up libaom3:amd64 (3.8.2-3) ...
Setting up libpciaccess0:amd64 (0.17-3+b1) ...
Setting up libxau6:amd64 (1:1.0.9-1+b1) ...
Setting up libxdmcp6:amd64 (1:1.1.2-3+b1) ...
Setting up libkeyutils1:amd64 (1.6.3-3) ...
Setting up libxcb1:amd64 (1.17.0-2) ...
Setting up swig (4.2.1-1) ...
Setting up libicu72:amd64 (72.1-4+b1) ...
Setting up libxcb-xfixes0:amd64 (1.17.0-2) ...
Setting up gengetopt (2.23+dfsg1-1) ...
Setting up liblerc4:amd64 (4.0.0+ds-4+b1) ...
Setting up bsdextrautils (2.40.1-8.1) ...
Setting up libdatrie1:amd64 (0.2.13-3) ...
Setting up libgslcblas0:amd64 (2.7.1+dfsg-6+b1) ...
Setting up libmagic-mgc (1:5.45-3) ...
Setting up libxcb-render0:amd64 (1.17.0-2) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libglvnd0:amd64 (1.7.0-1+b1) ...
Setting up libijs-0.35:amd64 (0.35-15.1+b1) ...
Setting up libxcb-glx0:amd64 (1.17.0-2) ...
Setting up libdebhelper-perl (13.16) ...
Setting up libgs-common (10.03.1~dfsg-1) ...
Setting up libbrotli1:amd64 (1.1.0-2+b3) ...
Setting up libfontbox-java (1:1.8.16-5) ...
Setting up libedit2:amd64 (3.1-20240517-1) ...
Setting up libsqlite3-0:amd64 (3.46.0-1) ...
Setting up liblab-gamut1:amd64 (2.42.2-9+b1) ...
Setting up libmagic1t64:amd64 (1:5.45-3) ...
Setting up x11-common (1:7.7+23) ...
invoke-rc.d: could not determine current runlevel
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of restart.
Setting up libsensors-config (1:3.6.0-10) ...
Setting up libdeflate0:amd64 (1.20-1) ...
Setting up perl-doc (5.38.2-5) ...
Setting up libxml-namespacesupport-perl (1.12-2) ...
Setting up gettext-base (0.21-15) ...
Setting up libgsl27:amd64 (2.7.1+dfsg-6+b1) ...
Setting up m4 (1.4.19-4) ...
Setting up libsvtav1enc1d1:amd64 (1.7.0+dfsg-2+b1) ...
Setting up libxcb-shm0:amd64 (1.17.0-2) ...
Setting up libcom-err2:amd64 (1.47.1-1) ...
Setting up file (1:5.45-3) ...
Setting up texinfo-lib (7.1-3+b1) ...
Setting up cthreadpool-dev (0.0+git20231218.4eb5a69-1) ...
Setting up libjbig0:amd64 (2.1-6.1+b1) ...
Setting up librav1e0:amd64 (0.7.1-2) ...
Setting up xxd (2:9.1.0496-1) ...
Setting up libelf1t64:amd64 (0.191-1+b1) ...
Setting up poppler-data (0.4.12-1) ...
Setting up libkrb5support0:amd64 (1.21.2-1) ...
Setting up tzdata (2024a-4) ...
Current default time zone: 'Etc/UTC'
Local time is now: Sun Jun 23 20:44:22 UTC 2024.
Universal Time is now: Sun Jun 23 20:44:22 UTC 2024.
Run 'dpkg-reconfigure tzdata' if you wish to change it.
Setting up libxcb-present0:amd64 (1.17.0-2) ...
Setting up libxml-sax-base-perl (1.09-3) ...
Setting up xtrans-dev (1.4.0-1) ...
Setting up libfontenc1:amd64 (1:1.1.8-1) ...
Setting up autotools-dev (20220109.1) ...
Setting up libz3-4:amd64 (4.8.12-3.1+b2) ...
Setting up libglib2.0-0t64:amd64 (2.80.3-1) ...
No schema files found: doing nothing.
Setting up libblas3:amd64 (3.12.0-3) ...
update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode
Setting up libpkgconf3:amd64 (1.8.1-3) ...
Setting up libgmpxx4ldbl:amd64 (2:6.3.0+dfsg-2+b1) ...
Setting up libexpat1-dev:amd64 (2.6.2-1) ...
Setting up libjpeg62-turbo:amd64 (1:2.1.5-3) ...
Setting up libzzip-0-13t64:amd64 (0.13.72+dfsg.1-1.2+b1) ...
Setting up libsqlite3-dev:amd64 (3.46.0-1) ...
Setting up libx11-data (2:1.8.7-1) ...
Setting up libxcb-sync1:amd64 (1.17.0-2) ...
Setting up libjbig2dec0:amd64 (0.20-1+b2) ...
Setting up libteckit0:amd64 (2.5.12+ds1-1) ...
Setting up libpathplan4:amd64 (2.42.2-9+b1) ...
Setting up libapache-pom-java (29-2) ...
Setting up libavahi-common-data:amd64 (0.8-13+b2) ...
Setting up libann0 (1.1.2+doc-9+b1) ...
Setting up libdbus-1-3:amd64 (1.14.10-4+b1) ...
Setting up xfonts-encodings (1:1.0.4-2.2) ...
Setting up libfribidi0:amd64 (1.0.13-3+b1) ...
Setting up t1utils (1.41-4) ...
Setting up libtexlua53-5:amd64 (2024.20240313.70630+ds-2) ...
Setting up fonts-dejavu-mono (2.37-8) ...
Setting up libpng16-16t64:amd64 (1.6.43-5) ...
Setting up libhwloc15:amd64 (2.10.0-1+b1) ...
Setting up libidn12:amd64 (1.42-2) ...
Setting up autopoint (0.21-15) ...
Setting up libmpfi0:amd64 (1.5.4+ds-3) ...
Setting up fonts-dejavu-core (2.37-8) ...
Setting up pkgconf-bin (1.8.1-3) ...
Setting up libsensors5:amd64 (1:3.6.0-10) ...
Setting up libncursesw6:amd64 (6.5-2) ...
Setting up libk5crypto3:amd64 (1.21.2-1) ...
Setting up libltdl7:amd64 (2.4.7-7+b1) ...
Setting up libglapi-mesa:amd64 (24.1.1-2) ...
Setting up libkpathsea6:amd64 (2024.20240313.70630+ds-2) ...
Setting up libgfortran5:amd64 (14.1.0-2) ...
Setting up libvulkan1:amd64 (1.3.283.0-1) ...
Setting up autoconf (2.71-3) ...
Setting up libwebp7:amd64 (1.4.0-0.1) ...
Setting up libfmt9:amd64 (9.1.0+ds1-2) ...
Setting up libxcb-dri2-0:amd64 (1.17.0-2) ...
Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1) ...
Setting up dwz (0.15-1+b1) ...
Setting up libdav1d7:amd64 (1.4.2-1) ...
Setting up sensible-utils (0.0.23) ...
Setting up libxshmfence1:amd64 (1.3-1+b1) ...
Setting up libtiff6:amd64 (4.5.1+git230720-4) ...
Setting up libxcb-randr0:amd64 (1.17.0-2) ...
Setting up libuchardet0:amd64 (0.0.8-1+b1) ...
Setting up fonts-lmodern (2.005-1) ...
Setting up libopenjp2-7:amd64 (2.5.0-2+b3) ...
Setting up libx11-6:amd64 (2:1.8.7-1+b1) ...
Setting up libthai-data (0.1.29-2) ...
Setting up xorg-sgml-doctools (1:1.11-1.1) ...
Setting up netbase (6.4) ...
Setting up libabsl20230802:amd64 (20230802.1-4) ...
Setting up libgts-0.7-5t64:amd64 (0.7.6+darcs121130-5.2) ...
Setting up libcdt5:amd64 (2.42.2-9+b1) ...
Setting up libkrb5-3:amd64 (1.21.2-1) ...
Setting up libcgraph6:amd64 (2.42.2-9+b1) ...
Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
Setting up libtext-unidecode-perl (1.30-3) ...
Setting up libde265-0:amd64 (1.0.15-1+b1) ...
Setting up libdrm-common (2.4.121-2) ...
Setting up libyuv0:amd64 (0.0.1888.20240607-1) ...
Setting up readline-common (8.2-4) ...
Setting up libxml2:amd64 (2.12.7+dfsg-3) ...
Setting up libdlib-data (19.24.4+dfsg-1) ...
Setting up xdg-utils (1.1.3-4.1) ...
update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
Setting up liblocale-gettext-perl (1.07-7) ...
Setting up libblas-dev:amd64 (3.12.0-3) ...
update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode
Setting up libsvm3:amd64 (3.24+ds-6+b1) ...
Setting up libsynctex2:amd64 (2024.20240313.70630+ds-2) ...
Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ...
Setting up libpotrace0:amd64 (1.16-2+b1) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up x11proto-dev (2024.1-1) ...
Setting up libfile-stripnondeterminism-perl (1.14.0-1) ...
Setting up libxcb-dri3-0:amd64 (1.17.0-2) ...
Setting up libx11-xcb1:amd64 (2:1.8.7-1+b1) ...
Setting up libice6:amd64 (2:1.0.10-1+b1) ...
Setting up liblapack3:amd64 (3.12.0-3) ...
update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
Setting up gettext (0.21-15) ...
Setting up libgsl-dev (2.7.1+dfsg-6+b1) ...
Setting up libgmp-dev:amd64 (2:6.3.0+dfsg-2+b1) ...
Setting up libpdfbox-java (1:1.8.16-5) ...
Setting up libxau-dev:amd64 (1:1.0.9-1+b1) ...
Setting up libxpm4:amd64 (1:3.5.17-1+b1) ...
Setting up libxrender1:amd64 (1:0.9.10-1.1+b1) ...
Setting up libtool (2.4.7-7) ...
Setting up fontconfig-config (2.15.0-1.1) ...
Setting up libpng-dev:amd64 (1.6.43-5) ...
Setting up libcommons-parent-java (56-1) ...
Setting up libavahi-common3:amd64 (0.8-13+b2) ...
Setting up libcommons-logging-java (1.3.0-1) ...
Setting up libxext6:amd64 (2:1.3.4-1+b1) ...
Setting up libmpfr-dev:amd64 (4.2.1-1+b1) ...
Setting up pkgconf:amd64 (1.8.1-3) ...
Setting up libxxf86vm1:amd64 (1:1.1.4-1+b2) ...
Setting up libtbbbind-2-5:amd64 (2021.11.0-2) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up libdlib19.2:amd64 (19.24.4+dfsg-1) ...
Setting up libllvm16t64:amd64 (1:16.0.6-27) ...
Setting up help2man (1.49.3) ...
Setting up dh-autoreconf (20) ...
Setting up libthai0:amd64 (0.1.29-2) ...
Setting up libxdmcp-dev:amd64 (1:1.1.2-3+b1) ...
Setting up libptexenc1:amd64 (2024.20240313.70630+ds-2) ...
Setting up libllvm17t64:amd64 (1:17.0.6-12) ...
Setting up libfreetype6:amd64 (2.13.2+dfsg-1+b4) ...
Setting up libxfixes3:amd64 (1:6.0.0-2+b1) ...
Setting up libsvm-dev:amd64 (3.24+ds-6+b1) ...
Setting up liblapack-dev:amd64 (3.12.0-3) ...
update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode
Setting up libgssapi-krb5-2:amd64 (1.21.2-1) ...
Setting up pkg-config:amd64 (1.8.1-3) ...
Setting up libgav1-1:amd64 (0.19.0-2+b1) ...
Setting up ucf (3.0043+nmu1) ...
Setting up libjs-sphinxdoc (7.2.6-9) ...
Setting up libreadline8t64:amd64 (8.2-4) ...
Setting up dh-strip-nondeterminism (1.14.0-1) ...
Setting up libgvpr2:amd64 (2.42.2-9+b1) ...
Setting up libdrm2:amd64 (2.4.121-2) ...
Setting up groff-base (1.23.0-4) ...
Setting up libharfbuzz0b:amd64 (8.3.0-2+b1) ...
Setting up libfontconfig1:amd64 (2.15.0-1.1) ...
Setting up libsm6:amd64 (2:1.2.3-1+b1) ...
Setting up libavahi-client3:amd64 (0.8-13+b2) ...
Setting up libdrm-amdgpu1:amd64 (2.4.121-2) ...
Setting up libpaper1:amd64 (1.1.29+b1) ...
Creating config file /etc/papersize with new version
Setting up fontconfig (2.15.0-1.1) ...
Regenerating fonts cache... done.
Setting up libavif16:amd64 (1.0.4-3) ...
Setting up libxcb1-dev:amd64 (1.17.0-2) ...
Setting up libxi6:amd64 (2:1.8.1-1) ...
Setting up libdrm-radeon1:amd64 (2.4.121-2) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libpython3.11-stdlib:amd64 (3.11.9-1) ...
Setting up libpango-1.0-0:amd64 (1.54.0+ds-1) ...
Setting up libdrm-intel1:amd64 (2.4.121-2) ...
Setting up libgl1-mesa-dri:amd64 (24.1.1-2) ...
Setting up libpython3.11t64:amd64 (3.11.9-1) ...
Setting up libx11-dev:amd64 (2:1.8.7-1+b1) ...
Setting up libtbb12:amd64 (2021.11.0-2) ...
Setting up libpaper-utils (1.1.29+b1) ...
Setting up libclang1-16t64 (1:16.0.6-27) ...
Setting up xfonts-utils (1:7.7+6) ...
Setting up man-db (2.12.1-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libxml-sax-perl (1.02+dfsg-3) ...
update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version
Setting up libclang-cpp16t64 (1:16.0.6-27) ...
Setting up libcairo2:amd64 (1.18.0-3+b1) ...
Setting up tex-common (6.18) ...
update-language: texlive-base not installed and configured, doing nothing!
Setting up doxygen (1.9.8+ds-2+b1) ...
Setting up libpython3.11-dev:amd64 (3.11.9-1) ...
Setting up libxt6t64:amd64 (1:1.2.1-1.2) ...
Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-3.1) ...
update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50...
update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version
Setting up libtbb-dev:amd64 (2021.11.0-2) ...
Setting up libpangoft2-1.0-0:amd64 (1.54.0+ds-1) ...
Setting up libcups2t64:amd64 (2.4.10-1) ...
Setting up libpangocairo-1.0-0:amd64 (1.54.0+ds-1) ...
Setting up libpython3-stdlib:amd64 (3.11.8-1) ...
Setting up python3.11 (3.11.9-1) ...
Setting up libxmu6:amd64 (2:1.1.3-3+b2) ...
Setting up libglx-mesa0:amd64 (24.1.1-2) ...
Setting up libpython3-dev:amd64 (3.11.8-1) ...
Setting up libglx0:amd64 (1.7.0-1+b1) ...
Setting up python3.11-dev (3.11.9-1) ...
Setting up preview-latex-style (13.2-1) ...
Setting up debhelper (13.16) ...
Setting up python3 (3.11.8-1) ...
Setting up libxaw7:amd64 (2:1.0.14-1+b2) ...
Setting up fonts-urw-base35 (20200910-8) ...
Setting up pybind11-dev (2.12.0-1) ...
Setting up texinfo (7.1-3) ...
Running mktexlsr. This may take some time. ... done.
Setting up texlive-binaries (2024.20240313.70630+ds-2) ...
update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode
update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode
Setting up python3-lib2to3 (3.12.3-3.1) ...
Setting up texlive-base (2024.20240401-3) ...
tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps
tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg
tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper
tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex
Setting up libopencv-core406t64:amd64 (4.6.0+dfsg-13.1+b4) ...
Setting up python3-pkg-resources (68.1.2-2) ...
Setting up python3-distutils (3.12.3-3.1) ...
Setting up libgs10-common (10.03.1~dfsg-1) ...
Setting up python3-setuptools (68.1.2-2) ...
Setting up texlive-latex-base (2024.20240401-3) ...
Setting up python3-dev (3.11.8-1) ...
Setting up texlive-latex-recommended (2024.20240401-3) ...
Setting up texlive-pictures (2024.20240401-3) ...
Setting up libopencv-core-dev:amd64 (4.6.0+dfsg-13.1+b4) ...
Setting up libgs10:amd64 (10.03.1~dfsg-1) ...
Setting up dh-python (6.20240422) ...
Setting up texlive-latex-extra (2024.20240401-2) ...
Setting up ghostscript (10.03.1~dfsg-1) ...
Setting up libdlib-dev:amd64 (19.24.4+dfsg-1) ...
Setting up libheif-plugin-dav1d:amd64 (1.17.6-3+b1) ...
Setting up libheif-plugin-libde265:amd64 (1.17.6-3+b1) ...
Setting up libheif1:amd64 (1.17.6-3+b1) ...
Setting up libgd3:amd64 (2.3.3-9+b3) ...
Setting up libgvc6 (2.42.2-9+b1) ...
Setting up graphviz (2.42.2-9+b1) ...
Setting up sbuild-build-depends-main-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.38-13) ...
Processing triggers for tex-common (6.18) ...
Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
Building format(s) --all.
This may take some time... done.
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (amd64 included in any)
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 6.8.12-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.8.12-1 (2024-05-31) amd64 (x86_64)
Toolchain package versions: binutils_2.42.50.20240618-1 dpkg-dev_1.22.6 g++-13_13.3.0-1 gcc-13_13.3.0-1 libc6-dev_2.38-13 libstdc++-13-dev_13.3.0-1 libstdc++6_14.1.0-2 linux-libc-dev_6.8.12-1
Package versions: apt_2.9.5 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-15 autotools-dev_20220109.1 base-files_13.3 base-passwd_3.6.3 bash_5.2.21-2.1 binutils_2.42.50.20240618-1 binutils-common_2.42.50.20240618-1 binutils-x86-64-linux-gnu_2.42.50.20240618-1 bsdextrautils_2.40.1-8.1 bsdutils_1:2.40.1-8.1 build-essential_12.10 bzip2_1.0.8-5.1 ccache_4.9.1-1 coreutils_9.4-3.1 cpp_4:13.2.0-7 cpp-13_13.3.0-1 cpp-13-x86-64-linux-gnu_13.3.0-1 cpp-x86-64-linux-gnu_4:13.2.0-7 cthreadpool-dev_0.0+git20231218.4eb5a69-1 dash_0.5.12-9 debconf_1.5.86 debhelper_13.16 debian-archive-keyring_2023.4 debianutils_5.19 dh-autoreconf_20 dh-python_6.20240422 dh-strip-nondeterminism_1.14.0-1 diffutils_1:3.10-1 doxygen_1.9.8+ds-2+b1 dpkg_1.22.6 dpkg-dev_1.22.6 dwz_0.15-1+b1 eatmydata_131-2 fakeroot_1.35-1 file_1:5.45-3 findutils_4.10.0-2 fontconfig_2.15.0-1.1 fontconfig-config_2.15.0-1.1 fonts-dejavu-core_2.37-8 fonts-dejavu-mono_2.37-8 fonts-lmodern_2.005-1 fonts-urw-base35_20200910-8 g++_4:13.2.0-7 g++-13_13.3.0-1 g++-13-x86-64-linux-gnu_13.3.0-1 g++-x86-64-linux-gnu_4:13.2.0-7 gcc_4:13.2.0-7 gcc-13_13.3.0-1 gcc-13-base_13.3.0-1 gcc-13-x86-64-linux-gnu_13.3.0-1 gcc-14-base_14.1.0-2 gcc-x86-64-linux-gnu_4:13.2.0-7 gengetopt_2.23+dfsg1-1 gettext_0.21-15 gettext-base_0.21-15 ghostscript_10.03.1~dfsg-1 gpgv_2.2.43-7 graphviz_2.42.2-9+b1 grep_3.11-4 groff-base_1.23.0-4 gzip_1.12-1.1 help2man_1.49.3 hostname_3.23+nmu2 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 libabsl20230802_20230802.1-4 libacl1_2.3.2-2 libann0_1.1.2+doc-9+b1 libaom3_3.8.2-3 libapache-pom-java_29-2 libapt-pkg6.0t64_2.9.5 libarchive-zip-perl_1.68-1 libasan8_14.1.0-2 libatomic1_14.1.0-2 libattr1_1:2.5.2-1 libaudit-common_1:3.1.2-4 libaudit1_1:3.1.2-4 libavahi-client3_0.8-13+b2 libavahi-common-data_0.8-13+b2 libavahi-common3_0.8-13+b2 libavif16_1.0.4-3 libbinutils_2.42.50.20240618-1 libblas-dev_3.12.0-3 libblas3_3.12.0-3 libblkid1_2.40.1-8.1 libbrotli1_1.1.0-2+b3 libbsd0_0.12.2-1 libbz2-1.0_1.0.8-5.1 libc-bin_2.38-13 libc-dev-bin_2.38-13 libc6_2.38-13 libc6-dev_2.38-13 libcairo2_1.18.0-3+b1 libcap-ng0_0.8.5-1 libcap2_1:2.66-5 libcc1-0_14.1.0-2 libcdt5_2.42.2-9+b1 libcgraph6_2.42.2-9+b1 libclang-cpp16t64_1:16.0.6-27 libclang1-16t64_1:16.0.6-27 libcom-err2_1.47.1-1 libcommons-logging-java_1.3.0-1 libcommons-parent-java_56-1 libcrypt-dev_1:4.4.36-4 libcrypt1_1:4.4.36-4 libctf-nobfd0_2.42.50.20240618-1 libctf0_2.42.50.20240618-1 libcups2t64_2.4.10-1 libdatrie1_0.2.13-3 libdav1d7_1.4.2-1 libdb5.3t64_5.3.28+dfsg2-7 libdbus-1-3_1.14.10-4+b1 libde265-0_1.0.15-1+b1 libdebconfclient0_0.272 libdebhelper-perl_13.16 libdeflate0_1.20-1 libdlib-data_19.24.4+dfsg-1 libdlib-dev_19.24.4+dfsg-1 libdlib19.2_19.24.4+dfsg-1 libdpkg-perl_1.22.6 libdrm-amdgpu1_2.4.121-2 libdrm-common_2.4.121-2 libdrm-intel1_2.4.121-2 libdrm-radeon1_2.4.121-2 libdrm2_2.4.121-2 libeatmydata1_131-2 libedit2_3.1-20240517-1 libelf1t64_0.191-1+b1 libexpat1_2.6.2-1 libexpat1-dev_2.6.2-1 libfakeroot_1.35-1 libffi8_3.4.6-1 libfile-stripnondeterminism-perl_1.14.0-1 libfmt9_9.1.0+ds1-2 libfontbox-java_1:1.8.16-5 libfontconfig1_2.15.0-1.1 libfontenc1_1:1.1.8-1 libfreetype6_2.13.2+dfsg-1+b4 libfribidi0_1.0.13-3+b1 libgav1-1_0.19.0-2+b1 libgcc-13-dev_13.3.0-1 libgcc-s1_14.1.0-2 libgcrypt20_1.10.3-3 libgd3_2.3.3-9+b3 libgdbm-compat4t64_1.23-6 libgdbm6t64_1.23-6 libgfortran5_14.1.0-2 libgl1-mesa-dri_24.1.1-2 libglapi-mesa_24.1.1-2 libglib2.0-0t64_2.80.3-1 libglvnd0_1.7.0-1+b1 libglx-mesa0_24.1.1-2 libglx0_1.7.0-1+b1 libgmp-dev_2:6.3.0+dfsg-2+b1 libgmp10_2:6.3.0+dfsg-2+b1 libgmpxx4ldbl_2:6.3.0+dfsg-2+b1 libgnutls30t64_3.8.5-4 libgomp1_14.1.0-2 libgpg-error0_1.49-2 libgprofng0_2.42.50.20240618-1 libgraphite2-3_1.3.14-2 libgs-common_10.03.1~dfsg-1 libgs10_10.03.1~dfsg-1 libgs10-common_10.03.1~dfsg-1 libgsl-dev_2.7.1+dfsg-6+b1 libgsl27_2.7.1+dfsg-6+b1 libgslcblas0_2.7.1+dfsg-6+b1 libgssapi-krb5-2_1.21.2-1 libgts-0.7-5t64_0.7.6+darcs121130-5.2 libgvc6_2.42.2-9+b1 libgvpr2_2.42.2-9+b1 libharfbuzz0b_8.3.0-2+b1 libheif-plugin-dav1d_1.17.6-3+b1 libheif-plugin-libde265_1.17.6-3+b1 libheif1_1.17.6-3+b1 libhiredis1.1.0_1.2.0-6+b2 libhogweed6t64_3.10-1 libhwasan0_14.1.0-2 libhwloc15_2.10.0-1+b1 libice6_2:1.0.10-1+b1 libicu72_72.1-4+b1 libidn12_1.42-2 libidn2-0_2.3.7-2 libijs-0.35_0.35-15.1+b1 libisl23_0.26-3+b2 libitm1_14.1.0-2 libjansson4_2.14-2+b2 libjbig0_2.1-6.1+b1 libjbig2dec0_0.20-1+b2 libjpeg62-turbo_1:2.1.5-3 libjs-jquery_3.6.1+dfsg+~3.5.14-1 libjs-sphinxdoc_7.2.6-9 libjs-underscore_1.13.4~dfsg+~1.11.4-3 libk5crypto3_1.21.2-1 libkeyutils1_1.6.3-3 libkpathsea6_2024.20240313.70630+ds-2 libkrb5-3_1.21.2-1 libkrb5support0_1.21.2-1 liblab-gamut1_2.42.2-9+b1 liblapack-dev_3.12.0-3 liblapack3_3.12.0-3 liblcms2-2_2.14-2+b1 liblerc4_4.0.0+ds-4+b1 libllvm16t64_1:16.0.6-27 libllvm17t64_1:17.0.6-12 liblocale-gettext-perl_1.07-7 liblsan0_14.1.0-2 libltdl7_2.4.7-7+b1 liblz4-1_1.9.4-2 liblzma5_5.6.2-1 libmagic-mgc_1:5.45-3 libmagic1t64_1:5.45-3 libmd0_1.1.0-2 libmount1_2.40.1-8.1 libmpc3_1.3.1-1+b2 libmpfi0_1.5.4+ds-3 libmpfr-dev_4.2.1-1+b1 libmpfr6_4.2.1-1+b1 libncursesw6_6.5-2 libnettle8t64_3.10-1 libopencv-core-dev_4.6.0+dfsg-13.1+b4 libopencv-core406t64_4.6.0+dfsg-13.1+b4 libopenjp2-7_2.5.0-2+b3 libp11-kit0_0.25.3-5 libpam-modules_1.5.3-7 libpam-modules-bin_1.5.3-7 libpam-runtime_1.5.3-7 libpam0g_1.5.3-7 libpango-1.0-0_1.54.0+ds-1 libpangocairo-1.0-0_1.54.0+ds-1 libpangoft2-1.0-0_1.54.0+ds-1 libpaper-utils_1.1.29+b1 libpaper1_1.1.29+b1 libpathplan4_2.42.2-9+b1 libpciaccess0_0.17-3+b1 libpcre2-8-0_10.42-4+b1 libpdfbox-java_1:1.8.16-5 libperl5.38t64_5.38.2-5 libpipeline1_1.5.7-2 libpixman-1-0_0.42.2-1+b1 libpkgconf3_1.8.1-3 libpng-dev_1.6.43-5 libpng16-16t64_1.6.43-5 libpotrace0_1.16-2+b1 libptexenc1_2024.20240313.70630+ds-2 libpython3-dev_3.11.8-1 libpython3-stdlib_3.11.8-1 libpython3.11-dev_3.11.9-1 libpython3.11-minimal_3.11.9-1 libpython3.11-stdlib_3.11.9-1 libpython3.11t64_3.11.9-1 libquadmath0_14.1.0-2 librav1e0_0.7.1-2 libreadline8t64_8.2-4 libseccomp2_2.5.5-1 libselinux1_3.5-2+b2 libsensors-config_1:3.6.0-10 libsensors5_1:3.6.0-10 libsframe1_2.42.50.20240618-1 libsharpyuv0_1.4.0-0.1 libsm6_2:1.2.3-1+b1 libsmartcols1_2.40.1-8.1 libsqlite3-0_3.46.0-1 libsqlite3-dev_3.46.0-1 libssl3t64_3.2.2-1 libstdc++-13-dev_13.3.0-1 libstdc++6_14.1.0-2 libsvm-dev_3.24+ds-6+b1 libsvm3_3.24+ds-6+b1 libsvtav1enc1d1_1.7.0+dfsg-2+b1 libsynctex2_2024.20240313.70630+ds-2 libsystemd0_256.1-1 libtasn1-6_4.19.0-3+b2 libtbb-dev_2021.11.0-2 libtbb12_2021.11.0-2 libtbbbind-2-5_2021.11.0-2 libtbbmalloc2_2021.11.0-2 libteckit0_2.5.12+ds1-1 libtexlua53-5_2024.20240313.70630+ds-2 libtext-unidecode-perl_1.30-3 libthai-data_0.1.29-2 libthai0_0.1.29-2 libtiff6_4.5.1+git230720-4 libtinfo6_6.5-2 libtool_2.4.7-7 libtsan2_14.1.0-2 libubsan1_14.1.0-2 libuchardet0_0.0.8-1+b1 libudev1_256.1-1 libunistring5_1.2-1 libuuid1_2.40.1-8.1 libvulkan1_1.3.283.0-1 libwebp7_1.4.0-0.1 libx11-6_2:1.8.7-1+b1 libx11-data_2:1.8.7-1 libx11-dev_2:1.8.7-1+b1 libx11-xcb1_2:1.8.7-1+b1 libxapian30_1.4.25-1 libxau-dev_1:1.0.9-1+b1 libxau6_1:1.0.9-1+b1 libxaw7_2:1.0.14-1+b2 libxcb-dri2-0_1.17.0-2 libxcb-dri3-0_1.17.0-2 libxcb-glx0_1.17.0-2 libxcb-present0_1.17.0-2 libxcb-randr0_1.17.0-2 libxcb-render0_1.17.0-2 libxcb-shm0_1.17.0-2 libxcb-sync1_1.17.0-2 libxcb-xfixes0_1.17.0-2 libxcb1_1.17.0-2 libxcb1-dev_1.17.0-2 libxdmcp-dev_1:1.1.2-3+b1 libxdmcp6_1:1.1.2-3+b1 libxext6_2:1.3.4-1+b1 libxfixes3_1:6.0.0-2+b1 libxi6_2:1.8.1-1 libxml-libxml-perl_2.0207+dfsg+really+2.0134-3.1 libxml-namespacesupport-perl_1.12-2 libxml-sax-base-perl_1.09-3 libxml-sax-perl_1.02+dfsg-3 libxml2_2.12.7+dfsg-3 libxmu6_2:1.1.3-3+b2 libxpm4_1:3.5.17-1+b1 libxrender1_1:0.9.10-1.1+b1 libxshmfence1_1.3-1+b1 libxt6t64_1:1.2.1-1.2 libxxf86vm1_1:1.1.4-1+b2 libxxhash0_0.8.2-2+b1 libyuv0_0.0.1888.20240607-1 libz3-4_4.8.12-3.1+b2 libzstd1_1.5.6+dfsg-1 libzzip-0-13t64_0.13.72+dfsg.1-1.2+b1 linux-libc-dev_6.8.12-1 login_1:4.15.2-1 m4_1.4.19-4 make_4.3-4.1 man-db_2.12.1-2 mawk_1.3.4.20240123-1 media-types_10.1.0 ncurses-base_6.5-2 ncurses-bin_6.5-2 netbase_6.4 patch_2.7.6-7 perl_5.38.2-5 perl-base_5.38.2-5 perl-doc_5.38.2-5 perl-modules-5.38_5.38.2-5 pkg-config_1.8.1-3 pkgconf_1.8.1-3 pkgconf-bin_1.8.1-3 po-debconf_1.0.21+nmu1 poppler-data_0.4.12-1 preview-latex-style_13.2-1 pybind11-dev_2.12.0-1 python3_3.11.8-1 python3-dev_3.11.8-1 python3-distutils_3.12.3-3.1 python3-lib2to3_3.12.3-3.1 python3-minimal_3.11.8-1 python3-pkg-resources_68.1.2-2 python3-setuptools_68.1.2-2 python3.11_3.11.9-1 python3.11-dev_3.11.9-1 python3.11-minimal_3.11.9-1 readline-common_8.2-4 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.23 swig_4.2.1-1 sysvinit-utils_3.09-2 t1utils_1.41-4 tar_1.35+dfsg-3 tex-common_6.18 texinfo_7.1-3 texinfo-lib_7.1-3+b1 texlive-base_2024.20240401-3 texlive-binaries_2024.20240313.70630+ds-2 texlive-latex-base_2024.20240401-3 texlive-latex-extra_2024.20240401-2 texlive-latex-recommended_2024.20240401-3 texlive-pictures_2024.20240401-3 tzdata_2024a-4 ucf_3.0043+nmu1 usr-is-merged_39 util-linux_2.40.1-8.1 x11-common_1:7.7+23 x11proto-dev_2024.1-1 xdg-utils_1.1.3-4.1 xfonts-encodings_1:1.0.4-2.2 xfonts-utils_1:7.7+6 xorg-sgml-doctools_1:1.11-1.1 xtrans-dev_1.4.0-1 xxd_2:9.1.0496-1 xz-utils_5.6.2-1 zlib1g_1:1.3.dfsg+really1.3.1-1 zlib1g-dev_1:1.3.dfsg+really1.3.1-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
Format: 3.0 (quilt)
Source: vienna-rna
Binary: vienna-rna, python3-rna, librna-perl
Architecture: any
Version: 2.5.1+dfsg-1
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Uploaders: Olivier Sallou <osallou at debian.org>, Steffen Moeller <moeller at debian.org>
Homepage: https://www.tbi.univie.ac.at/RNA/
Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/med-team/vienna-rna
Vcs-Git: https://salsa.debian.org/med-team/vienna-rna.git
Build-Depends: debhelper-compat (= 13), dh-python, python3-dev, pkg-config, libtool, gettext, swig (>= 4.0.2), perl-doc, perl, graphviz, libdlib-dev, libgsl-dev, liblapack-dev, libmpfr-dev, libsvm-dev, xxd, texlive-latex-extra, help2man, gengetopt, cthreadpool-dev, ghostscript, doxygen, texinfo
Package-List:
librna-perl deb non-free/perl optional arch=any
python3-rna deb non-free/python optional arch=any
vienna-rna deb non-free/science optional arch=any
Checksums-Sha1:
3a4f05befe16b0cfbd319e122311cb9ff2fcaadb 20223836 vienna-rna_2.5.1+dfsg.orig.tar.xz
8d36249eadc16a75978b4b0cba62fe72574c4be6 11640 vienna-rna_2.5.1+dfsg-1.debian.tar.xz
Checksums-Sha256:
00aa22ba147d35bb545207edc07de6c43e16dd2f0f52b82369c89cd85d3a0f8d 20223836 vienna-rna_2.5.1+dfsg.orig.tar.xz
bfd69220530520f0fca68a89ebb16ec16a9cf1a81689f136790f089c8dab6f97 11640 vienna-rna_2.5.1+dfsg-1.debian.tar.xz
Files:
dd4c0c5a93f0b168ae26c4315651d618 20223836 vienna-rna_2.5.1+dfsg.orig.tar.xz
4189fd061b335f1e4780e0b3a229241a 11640 vienna-rna_2.5.1+dfsg-1.debian.tar.xz
Autobuild: yes
dpkg-source: warning: extracting unsigned source package (vienna-rna_2.5.1+dfsg-1.dsc)
dpkg-source: info: extracting vienna-rna in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking vienna-rna_2.5.1+dfsg.orig.tar.xz
dpkg-source: info: unpacking vienna-rna_2.5.1+dfsg-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying g2.patch
dpkg-source: info: applying tutorial.patch
dpkg-source: info: applying use_debian_packaged_dlib.patch
dpkg-source: info: applying python3.11.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
HOME=/sbuild-nonexistent
LANG=fr_FR.UTF-8
LC_ALL=C.UTF-8
LOGNAME=pierre
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=unstable-amd64-sbuild
SCHROOT_CHROOT_NAME=unstable-amd64-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=1000
SCHROOT_GROUP=pierre
SCHROOT_SESSION_ID=unstable-amd64-sbuild-4480b176-0af4-47c5-a3b4-471013defbee
SCHROOT_UID=1000
SCHROOT_USER=pierre
SHELL=/bin/sh
USER=pierre
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage --sanitize-env -us -uc -rfakeroot
dpkg-buildpackage: info: source package vienna-rna
dpkg-buildpackage: info: source version 2.5.1+dfsg-1
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille at debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture amd64
debian/rules clean
dh clean --with python3
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
rm -f doc/RNAlib*
rm -f doc/*.db
rm -f interfaces/Perl/Makefile.perl.old
rm -f interfaces/Python/install.record
rm -rf doc/html
rm -rf doc/latex
rm -rf src/cthreadpool
#find . \( -type f -a \( -name config.status -o -name config.sub -o -name config.guess \) \) -delete
find src/ViennaRNA -name "*.hex" -delete
find . -name "*eps-converted-to.pdf" -delete
rm -f src/bin/RNAfold_cmdl.[ch]
rm -f aclocal.m4 src/Kinfold/aclocal.m4
grep -rl "DO NOT MODIFY THIS FILE! It was generated by help2man" man | xargs -r rm -f
grep -lri "DO NOT EDIT THIS FILE." src | grep -v debian | xargs -r rm
grep -lri "File autogenerated by gengetopt" src | grep -v debian | xargs -r rm
grep -lri "Generated from configure.ac" . | grep -v debian | xargs -r rm
grep -lri "generated by GNU Gengetopt" . | grep -v debian | xargs -r rm
grep -lri "DO NOT MODIFY THIS FILE" man | grep -v debian | xargs -r rm
grep -lri "made by GNU Bison" src | grep -v debian | xargs -r rm
grep -lri "produced by makeinfo version" man | grep -v debian | xargs -r rm
#rm -f src/Kinfold/INSTALL src/RNAforester/INSTALL src/RNAlocmin/RNAlocmin
# removal of self-added symbolic links
rm -rf src/cthreadpool/
find . -name Makefile.in -delete
#rm -f config/ar-lib config/compile config/depcomp config/install-sh config/ltmain.sh config/missing config/test-driver config/texinfo.tex
rm -f configure
rm -f m4/libtool.m4
rm -f src/{RNAforester,RNAlocmin,Kinfold,Kinwalker}/{compile,depcomp,install-sh,missing,aclocal.m4,ylwrap}
rm -f src/{Kinwalker,RNAforester}/{aclocal.m4,ylwrap,install-sh
rm -f src/Kinfold/config.guess src/Kinfold/config.sub src/Kinfold/configure
rm -f src/Kinwalker/configure
rm -f src/RNAforester/configure src/RNAforester/g2-0.72/configure
rm -f src/RNAlocmin/config.guess src/RNAlocmin/config.sub src/RNAlocmin/configure
rm -f config/ltmain.sh src/Kinfold/INSTALL src/RNAforester/INSTALL
# removing self-created man pages
find man/ -name "*.1" -delete
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_clean
dpkg-source -b .
dpkg-source: info: using source format '3.0 (quilt)'
dpkg-source: info: building vienna-rna using existing ./vienna-rna_2.5.1+dfsg.orig.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: building vienna-rna in vienna-rna_2.5.1+dfsg-1.debian.tar.xz
dpkg-source: info: building vienna-rna in vienna-rna_2.5.1+dfsg-1.dsc
debian/rules binary
dh binary --with python3
dh_update_autotools_config
dh_autoreconf
configure.ac:17: installing './compile'
configure.ac:28: installing './config.guess'
configure.ac:28: installing './config.sub'
configure.ac:11: installing './install-sh'
configure.ac:11: installing './missing'
Makefile.am: installing './depcomp'
configure.ac:14: installing './compile'
configure.ac:7: installing './install-sh'
configure.ac:7: installing './missing'
Makefile.am: installing './INSTALL'
src/Makefile.am: installing './depcomp'
configure.ac: installing './ylwrap'
configure.ac:14: installing './compile'
configure.ac:4: installing './install-sh'
configure.ac:4: installing './missing'
Makefile.am: installing './depcomp'
configure.ac:11: installing './compile'
configure.ac:19: installing './config.guess'
configure.ac:19: installing './config.sub'
configure.ac:14: installing './install-sh'
configure.ac:14: installing './missing'
Makefile.am: installing './depcomp'
libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'config'.
libtoolize: copying file 'config/ltmain.sh'
libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'.
libtoolize: copying file 'm4/libtool.m4'
libtoolize: copying file 'm4/ltoptions.m4'
libtoolize: copying file 'm4/ltsugar.m4'
libtoolize: copying file 'm4/ltversion.m4'
libtoolize: copying file 'm4/lt~obsolete.m4'
configure.ac:39: warning: The macro `AC_PROG_CC_C99' is obsolete.
configure.ac:39: You should run autoupdate.
./lib/autoconf/c.m4:1659: AC_PROG_CC_C99 is expanded from...
configure.ac:39: the top level
configure.ac:48: installing 'config/ar-lib'
configure.ac:15: installing 'config/compile'
configure.ac:32: installing 'config/config.guess'
configure.ac:32: installing 'config/config.sub'
configure.ac:21: installing 'config/install-sh'
configure.ac:21: installing 'config/missing'
configure.ac:82: installing 'config/tap-driver.sh'
interfaces/Perl/Makefile.am: installing 'config/depcomp'
man/Makefile.am:5: installing 'config/texinfo.tex'
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
CFLAGS="-I/usr/include/json-c/ -I/usr/include/libsvm/" \
CXXFLAGS="-I/usr/include/json-c/ -I/usr/include/libsvm/" \
dh_auto_configure -- \
--with-cluster \
--without-python2 \
--with-python \
--without-forester \
--without-doc \
--without-tutorial
./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --with-cluster --without-python2 --with-python --without-forester --without-doc --without-tutorial
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C11 features... none needed
checking whether gcc understands -c and -o together... yes
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for wchar.h... yes
checking for minix/config.h... no
checking whether it is safe to define __EXTENSIONS__... yes
checking whether _XOPEN_SOURCE should be defined... no
checking whether make supports nested variables... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a race-free mkdir -p... /usr/bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports the include directive... yes (GNU style)
checking whether UID '1000' is supported by ustar format... yes
checking whether GID '1000' is supported by ustar format... yes
checking how to create a ustar tar archive... gnutar
checking dependency style of gcc... none
checking if malloc debugging is wanted... no
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking for g++... g++
checking whether the compiler supports GNU C++... yes
checking whether g++ accepts -g... yes
checking for g++ option to enable C++11 features... none needed
checking dependency style of g++... none
checking how to run the C++ preprocessor... g++ -E
checking for gcc... (cached) gcc
checking whether the compiler supports GNU C... (cached) yes
checking whether gcc accepts -g... (cached) yes
checking for gcc option to enable C11 features... (cached) none needed
checking whether gcc understands -c and -o together... (cached) yes
checking how to run the C preprocessor... gcc -E
checking for ar... ar
checking the archiver (ar) interface... ar
checking whether make sets $(MAKE)... (cached) yes
checking for grep that handles long lines and -e... /usr/bin/grep
checking for a sed that does not truncate output... /usr/bin/sed
checking for gawk... (cached) mawk
checking whether ln -s works... yes
checking how to print strings... printf
checking for a sed that does not truncate output... (cached) /usr/bin/sed
checking for egrep... /usr/bin/grep -E
checking for fgrep... /usr/bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking the maximum length of command line arguments... 1572864
checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for file... file
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for a working dd... /usr/bin/dd
checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1
checking for mt... no
checking if : is a manifest tool... no
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking how to run the C++ preprocessor... g++ -E
checking for ld used by g++... /usr/bin/ld -m elf_x86_64
checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC -DPIC
checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... yes
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for exp in -lm... yes
./configure: line 19143: #include: command not found
checking for egrep... (cached) /usr/bin/grep -E
checking for _Bool... yes
checking for stdbool.h that conforms to C99... yes
checking for malloc.h... yes
checking for float.h... yes
checking for limits.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for strings.h... (cached) yes
checking for unistd.h... (cached) yes
checking for math.h... yes
checking for stdarg.h... yes
checking for GNU libc compatible malloc... yes
checking for GNU libc compatible realloc... yes
checking for working strtod... yes
checking for floor... yes
checking for strdup... yes
checking for strstr... yes
checking for strchr... yes
checking for strrchr... yes
checking for strstr... (cached) yes
checking for strtol... yes
checking for strtoul... yes
checking for pow... yes
checking for rint... yes
checking for sqrt... yes
checking for erand48... yes
checking for memset... yes
checking for memmove... yes
checking for erand48... (cached) yes
checking for asprintf... yes
checking for vasprintf... yes
checking for an ANSI C-conforming const... yes
checking for size_t... yes
checking for inline... inline
checking for pdflatex... /usr/bin/pdflatex
checking for bibtex... /usr/bin/bibtex
checking for makeindex... /usr/bin/makeindex
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for C compiler vendor... gnu
checking for perl... /usr/bin/perl
checking whether C compiler accepts -fno-strict-aliasing... yes
checking whether C++ compiler accepts -fno-strict-aliasing... yes
checking whether the linker accepts -fno-strict-aliasing... yes
checking whether the C compiler allows unnamed unions of unnamed structs... yes
checking whether the C++ compiler allows unnamed unions of unnamed structs... yes
checking whether C compiler accepts -flto... yes
checking whether C++ compiler accepts -flto... yes
checking whether C compiler accepts -ffat-lto-objects... yes
checking whether C++ compiler accepts -ffat-lto-objects... yes
configure: WARNING: Trying to re-set ar/ranlib/nm to compiler specific wrappers
checking for gcc-ar... gcc-ar
checking for gcc-ranlib... gcc-ranlib
checking for gcc-nm... gcc-nm
checking whether the linker supports Link time Optimization (LTO)... yes
checking for ./src/libsvm-3.25/svm.cpp... no
checking for ./src/libsvm-3.25/svm.h... no
checking for ./src/json/json.c... no
checking for ./src/json/json.h... no
checking for cblas_dgemm in -lgslcblas... yes
checking for gsl_blas_dgemm in -lgsl... yes
checking for OpenMP flag of C compiler... -fopenmp
checking for OpenMP flag of C++ compiler... -fopenmp
checking whether gcc is Clang... no
checking whether pthreads work with "-pthread" and "-lpthread"... yes
checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE
checking whether more special flags are required for pthreads... no
checking for PTHREAD_PRIO_INHERIT... yes
checking compiler support for AVX 512 instructions... yes
checking compiler support for SSE 4.1 instructions... yes
checking whether C compiler accepts -ftree-vectorize... yes
checking for mpfr.h... yes
checking whether we can compile programs with mpfr support... yes
checking for ./src/ViennaRNA/plotting/naview/naview.c... yes
checking for ./src/ViennaRNA/plotting/naview/naview.h... yes
checking for ./interfaces/Makefile.am... yes
checking for swig... /usr/bin/swig
checking SWIG version... 4.2.1
checking for SWIG library... /usr/share/swig/4.2.1
checking for ./interfaces/Perl/Makefile.am... yes
checking for /usr/bin/perl... (cached) /usr/bin/perl
checking for Perl prefix... /usr
checking for Perl siteprefix... /usr/local
checking for Perl vendorprefix... /usr
checking for Perl extension include path... /usr/lib/x86_64-linux-gnu/perl/5.38/CORE
checking for Perl extension target directory... /usr/local/lib/x86_64-linux-gnu/perl/5.38.2
checking for architecture dependent Perl extension site target directory... /usr/local/lib/x86_64-linux-gnu/perl/5.38.2
checking for architecture dependent Perl extension vendor target directory... /usr/lib/x86_64-linux-gnu/perl5/5.38
checking for architecture independent Perl extension site target directory... /usr/local/share/perl/5.38.2
checking for architecture independent Perl extension vendor target directory... /usr/share/perl5
checking for Perl extensions C preprocessor flags... -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include
checking for Perl extensions linker flags... -shared -L/usr/local/lib -fstack-protector-strong
checking for Perl dynamic library extension... .so
checking for ./interfaces/Python/Makefile.am... yes
checking for python3... /usr/bin/python3
checking for Python3 include path... /usr/include/python3.11
checking for /usr/include/python3.11/Python.h... yes
checking for Python3 ldflags...
checking for Python3 extension linker... x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions
checking for directory to install Python3 scripts in... ${prefix}/lib/python3.11/site-packages
checking for directory to install architecture dependent python3 things in... ${exec_prefix}/lib/python3.11/site-packages
checking for Python3 module extension... .so
checking for Python3 tag for cached compiled scripts... cpython-311
checking for Python3 extension of cached and optimized bytecode... cpython-311.opt-1.pyc
checking for doxygen... /usr/bin/doxygen
checking for dot... /usr/bin/dot
checking for egrep... /usr/bin/egrep
checking for perl... /usr/bin/perl
checking for htlatex... no
checking for LaTeX package(s) babel fancyhdr geometry hyperref inputenc lastpage xcolor... yes
checking for check >= 0.9.4... no
configure: WARNING: check not found -- will not build C-library Unit tests
checking for diff... /usr/bin/diff
checking for xxd... /usr/bin/xxd
checking for gengetopt... /usr/bin/gengetopt
checking for help2man... /usr/bin/help2man
checking whether g++ supports C++11 features with -std=c++11... yes
checking for ./src/Kinfold/Makefile.am... yes
checking for ./src/Cluster/Makefile.am... yes
checking for ./src/RNAlocmin/Makefile.am... yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating packaging/macosx/Makefile
config.status: creating packaging/macosx/Distribution.xml
config.status: creating packaging/macosx/resources/welcome.txt
config.status: creating src/ViennaRNA/plotting/naview/Makefile
config.status: creating interfaces/Perl/Makefile
config.status: creating interfaces/Perl/version.i
config.status: creating interfaces/Python/Makefile
config.status: creating interfaces/Python/version.i
config.status: creating tests/Makefile
config.status: creating tests/RNApath.py
config.status: creating tests/RNAHelpers.pm
config.status: creating tests/test-env.sh
config.status: creating src/ViennaRNA/static/templates_postscript.h
config.status: creating src/ViennaRNA/static/templates_svg.h
config.status: creating src/ViennaRNA/static/energy_parameter_sets.h
config.status: creating src/Cluster/Makefile
config.status: creating src/ViennaRNA/vrna_config.h
config.status: creating misc/Makefile
config.status: creating interfaces/Makefile
config.status: creating Makefile
config.status: creating RNAlib2.pc
config.status: creating src/Utils/Makefile
config.status: creating src/bin/Makefile
config.status: creating src/Makefile
config.status: creating src/ViennaRNA/Makefile
config.status: creating src/ViennaRNA/static/Makefile
config.status: creating man/Makefile
config.status: creating doc/Makefile
config.status: creating doc/CLA/Makefile
config.status: creating RNA-Tutorial/Makefile
config.status: creating man/cmdlopt.sh
config.status: creating examples/Makefile
config.status: creating packaging/viennarna.spec
config.status: creating packaging/PKGBUILD
config.status: creating packaging/win_installer_archlinux_i686.nsi
config.status: creating packaging/win_installer_archlinux_x86_64.nsi
config.status: creating packaging/win_installer_fedora_i686.nsi
config.status: creating packaging/win_installer_fedora_x86_64.nsi
config.status: creating config.h
config.status: executing depfiles commands
config.status: executing libtool commands
=== configuring in src/Kinfold (/<<PKGBUILDDIR>>/src/Kinfold)
configure: running /bin/bash ./configure --disable-option-checking '--prefix=/usr' '--build=x86_64-linux-gnu' '--includedir=${prefix}/include' '--mandir=${prefix}/share/man' '--infodir=${prefix}/share/info' '--sysconfdir=/etc' '--localstatedir=/var' '--disable-silent-rules' '--libdir=${prefix}/lib/x86_64-linux-gnu' '--runstatedir=/run' '--disable-maintainer-mode' '--disable-dependency-tracking' '--with-cluster' '--without-python2' '--with-python' '--without-forester' '--without-doc' '--without-tutorial' 'build_alias=x86_64-linux-gnu' 'CFLAGS=-I/usr/include/json-c/ -I/usr/include/libsvm/' 'LDFLAGS=-Wl,-z,relro' 'CPPFLAGS=-Wdate-time -D_FORTIFY_SOURCE=2' 'CXXFLAGS=-I/usr/include/json-c/ -I/usr/include/libsvm/' 'CC=gcc' 'CXX=g++' 'AR=gcc-ar' 'RANLIB=gcc-ranlib' 'NM=gcc-nm' 'VRNA_CFLAGS=-I$(top_srcdir)/../../src/ViennaRNA -I$(top_srcdir)/../../src -DVRNA_WITH_NAVIEW_LAYOUT' 'VRNA_LIBS=-fno-strict-aliasing -flto -L$(top_builddir)/../../src/ViennaRNA -lRNA -fopenmp -lgsl -lgslcblas -lpthread -lmpfr -lgmp' --cache-file=/dev/null --srcdir=.
checking whether make supports nested variables... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a race-free mkdir -p... /usr/bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking if malloc debugging is wanted... no
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C11 features... none needed
checking whether gcc understands -c and -o together... yes
checking whether make supports the include directive... yes (GNU style)
checking dependency style of gcc... none
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking for strdup... yes
checking for memset... yes
checking for strchr... yes
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for RNAlib2 >= 2.2.0... yes
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
./configure: line 4958: #include: command not found
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for strings.h... (cached) yes
checking for unistd.h... (cached) yes
checking for exp in -lm... yes
checking for an ANSI C-conforming const... yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Example/Makefile
config.status: creating Makefile
config.status: creating config.h
config.status: executing depfiles commands
=== configuring in src/RNAlocmin (/<<PKGBUILDDIR>>/src/RNAlocmin)
configure: running /bin/bash ./configure --disable-option-checking '--prefix=/usr' '--build=x86_64-linux-gnu' '--includedir=${prefix}/include' '--mandir=${prefix}/share/man' '--infodir=${prefix}/share/info' '--sysconfdir=/etc' '--localstatedir=/var' '--disable-silent-rules' '--libdir=${prefix}/lib/x86_64-linux-gnu' '--runstatedir=/run' '--disable-maintainer-mode' '--disable-dependency-tracking' '--with-cluster' '--without-python2' '--with-python' '--without-forester' '--without-doc' '--without-tutorial' 'build_alias=x86_64-linux-gnu' 'CFLAGS=-I/usr/include/json-c/ -I/usr/include/libsvm/' 'LDFLAGS=-Wl,-z,relro' 'CPPFLAGS=-Wdate-time -D_FORTIFY_SOURCE=2' 'CXXFLAGS=-I/usr/include/json-c/ -I/usr/include/libsvm/' 'CC=gcc' 'CXX=g++' 'AR=gcc-ar' 'RANLIB=gcc-ranlib' 'NM=gcc-nm' 'VRNA_CFLAGS=-I$(top_srcdir)/../../src/ViennaRNA -I$(top_srcdir)/../../src -DVRNA_WITH_NAVIEW_LAYOUT' 'VRNA_LIBS=-fno-strict-aliasing -flto -L$(top_builddir)/../../src/ViennaRNA -lRNA -fopenmp -lgsl -lgslcblas -lpthread -lmpfr -lgmp' --cache-file=/dev/null --srcdir=.
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C11 features... none needed
checking whether gcc understands -c and -o together... yes
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for wchar.h... yes
checking for minix/config.h... no
checking whether it is safe to define __EXTENSIONS__... yes
checking whether _XOPEN_SOURCE should be defined... no
checking whether make supports nested variables... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a race-free mkdir -p... /usr/bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports the include directive... yes (GNU style)
checking dependency style of gcc... none
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking whether the compiler supports GNU C++... yes
checking whether g++ accepts -g... yes
checking for g++ option to enable C++11 features... none needed
checking dependency style of g++... none
checking how to run the C++ preprocessor... g++ -E
checking for gcc... (cached) gcc
checking whether the compiler supports GNU C... (cached) yes
checking whether gcc accepts -g... (cached) yes
checking for gcc option to enable C11 features... (cached) none needed
checking whether gcc understands -c and -o together... (cached) yes
checking how to run the C preprocessor... gcc -E
checking whether g++ supports C++11 features by default... yes
checking for strchr... yes
checking for strdup... yes
checking for strtol... yes
checking for limits.h... yes
checking for _Bool... yes
checking for stdbool.h that conforms to C99... yes
checking for inline... inline
checking for GNU libc compatible malloc... yes
checking for GNU libc compatible realloc... yes
checking for working strtod... yes
checking for size_t... yes
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for RNAlib2... yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating config.h
config.status: executing depfiles commands
configure:
======================================
ViennaRNA Package 2.5.1
======================================
Successfully configured with the following options:
Sub Packages
------------
* Kinfold : yes
* RNAforester : no
* Analyse{Dists,Seqs} : yes
* RNAlocmin : yes
* Kinwalker : no
Extra Libraries
---------------
* Support Vector Machine : no
* GNU Scientific Library : yes
* GNU MPFR : yes
* JSON : no
Features
--------
* Use hash for NR Sampling : no
* C11 features : yes
* TTY colors : yes
* Float Precision(PF} : no
* Deprecation Warnings : no
Optimizations
-------------
* Auto Vectorization : yes
* Explicit SIMD Extension : yes
* Link Time Optimization : yes
* POSIX Threads : yes
* OpenMP : yes
Scripting Language Interfaces
-----------------------------
* Perl 5 : yes
* Python 3.x : yes
* Python 2.x : no
Documentation
-------------
* Reference Manual (PDF) : no
* Reference Manual (HTML) : no
* Tutorial (PDF) : no
* Tutorial (HTML) : no
* CLA (PDF) : yes
Unit Tests
----------
* Executable Programs : yes
* C-Library : no
* Perl 5 Interface : yes
* Python 3.x Interface : yes
* Python 2.x Interface : no
MacOS X
-------
* Universal Binary : no
* Installer : no
* SDK : no
Install Directories
-------------------
* Executables : /usr/bin
* Libraries : /usr/lib/x86_64-linux-gnu
* Header files : /usr/include
* Extra Data : /usr/share
* Man pages : /usr/share/man
* Documentation : Not to be installed
(HTML) :
(PDF) :
* Perl5 Interface :
(binaries) : /usr/lib/x86_64-linux-gnu/perl/5.38.2
(scripts) : /usr/share/perl/5.38.2
* Python 3.x Interface :
(binaries) : /usr/lib/python3.11/site-packages
(scripts) : /usr/lib/python3.11/site-packages
* Python 2.x Interface : Not to be installed
(binaries) :
(scripts) :
You can run 'make', 'make check', and 'make install' now!
if [ -r man/help2manWrapper.sh ] \
; then chmod +x man/help2manWrapper.sh \
; fi
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
if [ ! -d src/cthreadpool ]; then \
mkdir -p src/cthreadpool && \
cd src/cthreadpool && \
ln -s /usr/include/cthreadpool/thpool.h . && \
ln -s /usr/share/cthreadpool/thpool.c . ; \
fi
dh_auto_build
make -j4
make[2]: Entering directory '/<<PKGBUILDDIR>>'
make all-recursive
make[3]: Entering directory '/<<PKGBUILDDIR>>'
Making all in src
make[4]: Entering directory '/<<PKGBUILDDIR>>/src'
Making all in ViennaRNA
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/ViennaRNA'
Making all in static
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/ViennaRNA/static'
/usr/bin/xxd -i < postscript/structure_plot_macro_base.ps > postscript/structure_plot_macro_base.hex && echo ',0x00' >> postscript/structure_plot_macro_base.hex
/usr/bin/xxd -i < postscript/structure_plot_macro_extras.ps > postscript/structure_plot_macro_extras.hex && echo ',0x00' >> postscript/structure_plot_macro_extras.hex
/usr/bin/xxd -i < postscript/dot_plot_macro_base.ps > postscript/dot_plot_macro_base.hex && echo ',0x00' >> postscript/dot_plot_macro_base.hex
/usr/bin/xxd -i < postscript/dot_plot_macro_turn.ps > postscript/dot_plot_macro_turn.hex && echo ',0x00' >> postscript/dot_plot_macro_turn.hex
/usr/bin/xxd -i < postscript/dot_plot_macro_sd.ps > postscript/dot_plot_macro_sd.hex && echo ',0x00' >> postscript/dot_plot_macro_sd.hex
/usr/bin/xxd -i < postscript/dot_plot_macro_ud.ps > postscript/dot_plot_macro_ud.hex && echo ',0x00' >> postscript/dot_plot_macro_ud.hex
/usr/bin/xxd -i < postscript/dot_plot_macro_sc_motifs.ps > postscript/dot_plot_macro_sc_motifs.hex && echo ',0x00' >> postscript/dot_plot_macro_sc_motifs.hex
/usr/bin/xxd -i < postscript/dot_plot_macro_linear_data.ps > postscript/dot_plot_macro_linear_data.hex && echo ',0x00' >> postscript/dot_plot_macro_linear_data.hex
/usr/bin/xxd -i < postscript/aln_macro_base.ps > postscript/aln_macro_base.hex && echo ',0x00' >> postscript/aln_macro_base.hex
/usr/bin/xxd -i < svg/structure_plot_header.svg > svg/structure_plot_header.hex && echo ',0x00' >> svg/structure_plot_header.hex
/usr/bin/xxd -i < svg/structure_plot_footer.svg > svg/structure_plot_footer.hex && echo ',0x00' >> svg/structure_plot_footer.hex
/usr/bin/mkdir -p misc && /usr/bin/xxd -i < ../../../misc/dna_mathews1999.par > misc/dna_mathews1999.hex && echo ',0x00' >> misc/dna_mathews1999.hex
/usr/bin/mkdir -p misc && /usr/bin/xxd -i < ../../../misc/dna_mathews2004.par > misc/dna_mathews2004.hex && echo ',0x00' >> misc/dna_mathews2004.hex
/usr/bin/mkdir -p misc && /usr/bin/xxd -i < ../../../misc/rna_andronescu2007.par > misc/rna_andronescu2007.hex && echo ',0x00' >> misc/rna_andronescu2007.hex
/usr/bin/mkdir -p misc && /usr/bin/xxd -i < ../../../misc/rna_langdon2018.par > misc/rna_langdon2018.hex && echo ',0x00' >> misc/rna_langdon2018.hex
/usr/bin/mkdir -p misc && /usr/bin/xxd -i < ../../../misc/rna_misc_special_hairpins.par > misc/rna_misc_special_hairpins.hex && echo ',0x00' >> misc/rna_misc_special_hairpins.hex
/usr/bin/mkdir -p misc && /usr/bin/xxd -i < ../../../misc/rna_turner1999.par > misc/rna_turner1999.hex && echo ',0x00' >> misc/rna_turner1999.hex
/usr/bin/mkdir -p misc && /usr/bin/xxd -i < ../../../misc/rna_turner2004.par > misc/rna_turner2004.hex && echo ',0x00' >> misc/rna_turner2004.hex
make all-am
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/ViennaRNA/static'
make[7]: Nothing to be done for 'all-am'.
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/ViennaRNA/static'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/ViennaRNA/static'
Making all in plotting/naview
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/ViennaRNA/plotting/naview'
/bin/bash ../../../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o naview.lo naview.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c naview.c -fPIC -DPIC -o .libs/naview.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c naview.c -fPIC -DPIC -o naview.o >/dev/null 2>&1
/bin/bash ../../../../libtool --tag=CC --mode=link gcc -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -fno-strict-aliasing -flto -lpthread -Wl,-z,relro -o libRNA_naview.la naview.lo -lgsl -lgslcblas -lm
libtool: link: gcc-ar cr .libs/libRNA_naview.a .libs/naview.o
libtool: link: gcc-ranlib .libs/libRNA_naview.a
libtool: link: ( cd ".libs" && rm -f "libRNA_naview.la" && ln -s "../libRNA_naview.la" "libRNA_naview.la" )
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/ViennaRNA/plotting/naview'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/ViennaRNA'
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o fold_compound.lo fold_compound.c
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o dist_vars.lo dist_vars.c
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o part_func.lo part_func.c
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o part_func_wrappers.lo part_func_wrappers.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c dist_vars.c -fPIC -DPIC -o .libs/dist_vars.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c fold_compound.c -fPIC -DPIC -o .libs/fold_compound.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c part_func.c -fPIC -DPIC -o .libs/part_func.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c part_func_wrappers.c -fPIC -DPIC -o .libs/part_func_wrappers.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c dist_vars.c -fPIC -DPIC -o dist_vars.o >/dev/null 2>&1
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o pf_fold.lo pf_fold.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c part_func_wrappers.c -fPIC -DPIC -o part_func_wrappers.o >/dev/null 2>&1
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c pf_fold.c -fPIC -DPIC -o .libs/pf_fold.o
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o pf_multifold.lo pf_multifold.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c fold_compound.c -fPIC -DPIC -o fold_compound.o >/dev/null 2>&1
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c pf_multifold.c -fPIC -DPIC -o .libs/pf_multifold.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c part_func.c -fPIC -DPIC -o part_func.o >/dev/null 2>&1
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c pf_fold.c -fPIC -DPIC -o pf_fold.o >/dev/null 2>&1
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c pf_multifold.c -fPIC -DPIC -o pf_multifold.o >/dev/null 2>&1
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o treedist.lo treedist.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c treedist.c -fPIC -DPIC -o .libs/treedist.o
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o inverse.lo inverse.c
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o ProfileDist.lo ProfileDist.c
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o RNAstruct.lo RNAstruct.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c inverse.c -fPIC -DPIC -o .libs/inverse.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c ProfileDist.c -fPIC -DPIC -o .libs/ProfileDist.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c RNAstruct.c -fPIC -DPIC -o .libs/RNAstruct.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c treedist.c -fPIC -DPIC -o treedist.o >/dev/null 2>&1
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c ProfileDist.c -fPIC -DPIC -o ProfileDist.o >/dev/null 2>&1
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c RNAstruct.c -fPIC -DPIC -o RNAstruct.o >/dev/null 2>&1
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c inverse.c -fPIC -DPIC -o inverse.o >/dev/null 2>&1
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o mfe.lo mfe.c
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o mfe_window.lo mfe_window.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c mfe.c -fPIC -DPIC -o .libs/mfe.o
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o mfe_wrappers.lo mfe_wrappers.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c mfe_window.c -fPIC -DPIC -o .libs/mfe_window.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c mfe_wrappers.c -fPIC -DPIC -o .libs/mfe_wrappers.o
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o mfe_window_wrappers.lo mfe_window_wrappers.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c mfe_wrappers.c -fPIC -DPIC -o mfe_wrappers.o >/dev/null 2>&1
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c mfe_window_wrappers.c -fPIC -DPIC -o .libs/mfe_window_wrappers.o
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o fold.lo fold.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c mfe_window_wrappers.c -fPIC -DPIC -o mfe_window_wrappers.o >/dev/null 2>&1
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c fold.c -fPIC -DPIC -o .libs/fold.o
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o stringdist.lo stringdist.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c stringdist.c -fPIC -DPIC -o .libs/stringdist.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c mfe_window.c -fPIC -DPIC -o mfe_window.o >/dev/null 2>&1
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c fold.c -fPIC -DPIC -o fold.o >/dev/null 2>&1
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c stringdist.c -fPIC -DPIC -o stringdist.o >/dev/null 2>&1
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c mfe.c -fPIC -DPIC -o mfe.o >/dev/null 2>&1
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o subopt.lo subopt.c
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o subopt_zuker.lo subopt_zuker.c
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o Lfold.lo Lfold.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c subopt.c -fPIC -DPIC -o .libs/subopt.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c subopt_zuker.c -fPIC -DPIC -o .libs/subopt_zuker.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c Lfold.c -fPIC -DPIC -o .libs/Lfold.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c Lfold.c -fPIC -DPIC -o Lfold.o >/dev/null 2>&1
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o cofold.lo cofold.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c cofold.c -fPIC -DPIC -o .libs/cofold.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c subopt_zuker.c -fPIC -DPIC -o subopt_zuker.o >/dev/null 2>&1
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c cofold.c -fPIC -DPIC -o cofold.o >/dev/null 2>&1
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o part_func_co.lo part_func_co.c
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o ProfileAln.lo ProfileAln.c
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o duplex.lo duplex.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c part_func_co.c -fPIC -DPIC -o .libs/part_func_co.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c ProfileAln.c -fPIC -DPIC -o .libs/ProfileAln.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c duplex.c -fPIC -DPIC -o .libs/duplex.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c part_func_co.c -fPIC -DPIC -o part_func_co.o >/dev/null 2>&1
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c ProfileAln.c -fPIC -DPIC -o ProfileAln.o >/dev/null 2>&1
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c duplex.c -fPIC -DPIC -o duplex.o >/dev/null 2>&1
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o alifold.lo alifold.c
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o alipfold.lo alipfold.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c alifold.c -fPIC -DPIC -o .libs/alifold.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c subopt.c -fPIC -DPIC -o subopt.o >/dev/null 2>&1
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c alipfold.c -fPIC -DPIC -o .libs/alipfold.o
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o LPfold.lo LPfold.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c alifold.c -fPIC -DPIC -o alifold.o >/dev/null 2>&1
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c LPfold.c -fPIC -DPIC -o .libs/LPfold.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c alipfold.c -fPIC -DPIC -o alipfold.o >/dev/null 2>&1
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o part_func_up.lo part_func_up.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c part_func_up.c -fPIC -DPIC -o .libs/part_func_up.o
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o ribo.lo ribo.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c ribo.c -fPIC -DPIC -o .libs/ribo.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c LPfold.c -fPIC -DPIC -o LPfold.o >/dev/null 2>&1
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c ribo.c -fPIC -DPIC -o ribo.o >/dev/null 2>&1
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c part_func_up.c -fPIC -DPIC -o part_func_up.o >/dev/null 2>&1
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o MEA.lo MEA.c
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o mm.lo mm.c
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o 2Dfold.lo 2Dfold.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c MEA.c -fPIC -DPIC -o .libs/MEA.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c mm.c -fPIC -DPIC -o .libs/mm.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c 2Dfold.c -fPIC -DPIC -o .libs/2Dfold.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c MEA.c -fPIC -DPIC -o MEA.o >/dev/null 2>&1
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c mm.c -fPIC -DPIC -o mm.o >/dev/null 2>&1
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o 2Dpfold.lo 2Dpfold.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c 2Dpfold.c -fPIC -DPIC -o .libs/2Dpfold.o
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o plex_functions.lo plex_functions.c
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o ali_plex.lo ali_plex.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c plex_functions.c -fPIC -DPIC -o .libs/plex_functions.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c ali_plex.c -fPIC -DPIC -o .libs/ali_plex.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c plex_functions.c -fPIC -DPIC -o plex_functions.o >/dev/null 2>&1
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c 2Dfold.c -fPIC -DPIC -o 2Dfold.o >/dev/null 2>&1
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o c_plex.lo c_plex.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c c_plex.c -fPIC -DPIC -o .libs/c_plex.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c 2Dpfold.c -fPIC -DPIC -o 2Dpfold.o >/dev/null 2>&1
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c c_plex.c -fPIC -DPIC -o c_plex.o >/dev/null 2>&1
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o plex.lo plex.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c plex.c -fPIC -DPIC -o .libs/plex.o
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o snofold.lo snofold.c
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o snoop.lo snoop.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c snofold.c -fPIC -DPIC -o .libs/snofold.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c snoop.c -fPIC -DPIC -o .libs/snoop.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c snofold.c -fPIC -DPIC -o snofold.o >/dev/null 2>&1
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c ali_plex.c -fPIC -DPIC -o ali_plex.o >/dev/null 2>&1
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c plex.c -fPIC -DPIC -o plex.o >/dev/null 2>&1
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o gquad.lo gquad.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c gquad.c -fPIC -DPIC -o .libs/gquad.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c snoop.c -fPIC -DPIC -o snoop.o >/dev/null 2>&1
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c gquad.c -fPIC -DPIC -o gquad.o >/dev/null 2>&1
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o perturbation_fold.lo perturbation_fold.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c perturbation_fold.c -fPIC -DPIC -o .libs/perturbation_fold.o
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o centroid.lo centroid.c
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o model.lo model.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c centroid.c -fPIC -DPIC -o .libs/centroid.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c model.c -fPIC -DPIC -o .libs/model.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c perturbation_fold.c -fPIC -DPIC -o perturbation_fold.o >/dev/null 2>&1
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c centroid.c -fPIC -DPIC -o centroid.o >/dev/null 2>&1
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c model.c -fPIC -DPIC -o model.o >/dev/null 2>&1
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o dp_matrices.lo dp_matrices.c
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o boltzmann_sampling.lo boltzmann_sampling.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c dp_matrices.c -fPIC -DPIC -o .libs/dp_matrices.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c boltzmann_sampling.c -fPIC -DPIC -o .libs/boltzmann_sampling.o
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o bs_wrappers.lo bs_wrappers.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c bs_wrappers.c -fPIC -DPIC -o .libs/bs_wrappers.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c bs_wrappers.c -fPIC -DPIC -o bs_wrappers.o >/dev/null 2>&1
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c dp_matrices.c -fPIC -DPIC -o dp_matrices.o >/dev/null 2>&1
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o equilibrium_probs.lo equilibrium_probs.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c equilibrium_probs.c -fPIC -DPIC -o .libs/equilibrium_probs.o
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o alphabet.lo alphabet.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c alphabet.c -fPIC -DPIC -o .libs/alphabet.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c boltzmann_sampling.c -fPIC -DPIC -o boltzmann_sampling.o >/dev/null 2>&1
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o sequence.lo sequence.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c alphabet.c -fPIC -DPIC -o alphabet.o >/dev/null 2>&1
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c sequence.c -fPIC -DPIC -o .libs/sequence.o
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o unstructured_domains.lo unstructured_domains.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c sequence.c -fPIC -DPIC -o sequence.o >/dev/null 2>&1
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c unstructured_domains.c -fPIC -DPIC -o .libs/unstructured_domains.o
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o grammar.lo grammar.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c grammar.c -fPIC -DPIC -o .libs/grammar.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c grammar.c -fPIC -DPIC -o grammar.o >/dev/null 2>&1
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o heat_capacity.lo heat_capacity.c
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -DDLIB_NO_GUI_SUPPORT -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o libRNA_concentrations_la-concentrations.lo `test -f 'concentrations.c' || echo './'`concentrations.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c unstructured_domains.c -fPIC -DPIC -o unstructured_domains.o >/dev/null 2>&1
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c heat_capacity.c -fPIC -DPIC -o .libs/heat_capacity.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -DDLIB_NO_GUI_SUPPORT -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c concentrations.c -fPIC -DPIC -o .libs/libRNA_concentrations_la-concentrations.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c heat_capacity.c -fPIC -DPIC -o heat_capacity.o >/dev/null 2>&1
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c equilibrium_probs.c -fPIC -DPIC -o equilibrium_probs.o >/dev/null 2>&1
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -DDLIB_NO_GUI_SUPPORT -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c concentrations.c -fPIC -DPIC -o libRNA_concentrations_la-concentrations.o >/dev/null 2>&1
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -DDLIB_NO_GUI_SUPPORT -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o libRNA_concentrations_la-wrap_dlib.lo `test -f 'wrap_dlib.cpp' || echo './'`wrap_dlib.cpp
libtool: compile: g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -DDLIB_NO_GUI_SUPPORT -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c wrap_dlib.cpp -fPIC -DPIC -o .libs/libRNA_concentrations_la-wrap_dlib.o
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o commands.lo commands.c
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o combinatorics.lo combinatorics.c
In file included from /usr/include/dlib/matrix/matrix_exp.h:6,
from /usr/include/dlib/matrix/matrix.h:6,
from /usr/include/dlib/matrix.h:6,
from /usr/include/dlib/optimization/optimization_search_strategies.h:8,
from /usr/include/dlib/optimization/optimization.h:9,
from /usr/include/dlib/optimization.h:6,
from wrap_dlib.cpp:16:
/usr/include/dlib/algs.h:17:10: error: #error "Dlib requires C++14 support. Give your compiler the -std=c++14 option to enable it."
17 | #error "Dlib requires C++14 support. Give your compiler the -std=c++14 option to enable it."
| ^~~~~
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c commands.c -fPIC -DPIC -o .libs/commands.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c combinatorics.c -fPIC -DPIC -o .libs/combinatorics.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c combinatorics.c -fPIC -DPIC -o combinatorics.o >/dev/null 2>&1
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c commands.c -fPIC -DPIC -o commands.o >/dev/null 2>&1
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o eval.lo eval.c
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o eval_covariance.lo eval_covariance.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c eval.c -fPIC -DPIC -o .libs/eval.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c eval_covariance.c -fPIC -DPIC -o .libs/eval_covariance.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c eval_covariance.c -fPIC -DPIC -o eval_covariance.o >/dev/null 2>&1
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o eval_wrappers.lo eval_wrappers.c
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o move_set.lo move_set.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c eval_wrappers.c -fPIC -DPIC -o .libs/eval_wrappers.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c move_set.c -fPIC -DPIC -o .libs/move_set.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c eval.c -fPIC -DPIC -o eval.o >/dev/null 2>&1
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c eval_wrappers.c -fPIC -DPIC -o eval_wrappers.o >/dev/null 2>&1
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c move_set.c -fPIC -DPIC -o move_set.o >/dev/null 2>&1
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -msse4.1 -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o utils/libRNA_utils_sse41_la-higher_order_functions_sse41.lo `test -f 'utils/higher_order_functions_sse41.c' || echo './'`utils/higher_order_functions_sse41.c
In file included from /usr/include/dlib/algs.h:123:
/usr/include/dlib/type_traits.h:35:46: error: ?remove_reference_t? is not a member of ?std?; did you mean ?remove_reference??
35 | using is_const_type = std::is_const<std::remove_reference_t<T>>;
| ^~~~~~~~~~~~~~~~~~
| remove_reference
/usr/include/dlib/type_traits.h:35:46: error: ?remove_reference_t? is not a member of ?std?; did you mean ?remove_reference??
35 | using is_const_type = std::is_const<std::remove_reference_t<T>>;
| ^~~~~~~~~~~~~~~~~~
| remove_reference
/usr/include/dlib/type_traits.h:35:65: error: template argument 1 is invalid
35 | using is_const_type = std::is_const<std::remove_reference_t<T>>;
| ^
/usr/include/dlib/type_traits.h:45:54: error: ?remove_const_t? is not a member of ?std?; did you mean ?remove_const??
45 | using is_reference_type = std::is_reference<std::remove_const_t<T>>;
| ^~~~~~~~~~~~~~
| remove_const
/usr/include/dlib/type_traits.h:45:54: error: ?remove_const_t? is not a member of ?std?; did you mean ?remove_const??
45 | using is_reference_type = std::is_reference<std::remove_const_t<T>>;
| ^~~~~~~~~~~~~~
| remove_const
/usr/include/dlib/type_traits.h:45:69: error: template argument 1 is invalid
45 | using is_reference_type = std::is_reference<std::remove_const_t<T>>;
| ^
/usr/include/dlib/type_traits.h:192:33: error: ?remove_cv_t? in namespace ?std? does not name a template type; did you mean ?remove_cv??
192 | using remove_cvref_t = std::remove_cv_t<std::remove_reference_t<T>>;
| ^~~~~~~~~~~
| remove_cv
/usr/include/dlib/type_traits.h:205:38: error: ?remove_cvref_t? does not name a type; did you mean ?__remove_cvref??
205 | struct basic_type { using type = remove_cvref_t<T>; };
| ^~~~~~~~~~~~~~
| __remove_cvref
/usr/include/dlib/type_traits.h:223:55: error: expected template-name before ?<? token
223 | struct conjunction<B1, Bn...> : std::conditional_t<bool(B1::value), conjunction<Bn...>, B1> {};
| ^
/usr/include/dlib/type_traits.h:223:55: error: expected ?{? before ?<? token
/usr/include/dlib/type_traits.h:481:59: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
481 | struct callable_traits_impl<void_t<decltype(&std::decay_t<F>::operator())>, F>
| ^~~~~~~
| decay
/usr/include/dlib/type_traits.h:481:68: error: expected primary-expression before ?>? token
481 | struct callable_traits_impl<void_t<decltype(&std::decay_t<F>::operator())>, F>
| ^
/usr/include/dlib/type_traits.h:481:71: error: ?::operator()? has not been declared
481 | struct callable_traits_impl<void_t<decltype(&std::decay_t<F>::operator())>, F>
| ^~~~~~~~~~
/usr/include/dlib/type_traits.h:481:82: error: template argument 1 is invalid
481 | struct callable_traits_impl<void_t<decltype(&std::decay_t<F>::operator())>, F>
| ^
/usr/include/dlib/type_traits.h:481:86: error: template argument 1 is invalid
481 | struct callable_traits_impl<void_t<decltype(&std::decay_t<F>::operator())>, F>
| ^
/usr/include/dlib/type_traits.h:482:60: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
482 | : public callable_traits_impl<void, decltype(&std::decay_t<F>::operator())>{};
| ^~~~~~~
| decay
/usr/include/dlib/type_traits.h:482:69: error: expected primary-expression before ?>? token
482 | : public callable_traits_impl<void, decltype(&std::decay_t<F>::operator())>{};
| ^
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -msse4.1 -I/usr/include/json-c/ -I/usr/include/libsvm/ -c utils/higher_order_functions_sse41.c -fPIC -DPIC -o utils/.libs/libRNA_utils_sse41_la-higher_order_functions_sse41.o
/usr/include/dlib/type_traits.h:482:72: error: ?::operator()? has not been declared
482 | : public callable_traits_impl<void, decltype(&std::decay_t<F>::operator())>{};
| ^~~~~~~~~~
/usr/include/dlib/type_traits.h:482:83: error: template argument 2 is invalid
482 | : public callable_traits_impl<void, decltype(&std::decay_t<F>::operator())>{};
| ^
/usr/include/dlib/algs.h:403:10: error: ?enable_if_t? in namespace ?std? does not name a template type
403 | std::enable_if_t<!std::is_convertible<T*, U*>::value && !std::is_convertible<U*,T*>::value, bool>
| ^~~~~~~~~~~
/usr/include/dlib/algs.h:403:5: note: ?std::enable_if_t? is only available from C++14 onwards
403 | std::enable_if_t<!std::is_convertible<T*, U*>::value && !std::is_convertible<U*,T*>::value, bool>
| ^~~
/usr/include/dlib/algs.h:418:10: error: ?enable_if_t? in namespace ?std? does not name a template type
418 | std::enable_if_t<std::is_convertible<T*, U*>::value || std::is_convertible<U*,T*>::value, bool>
| ^~~~~~~~~~~
/usr/include/dlib/algs.h:418:5: note: ?std::enable_if_t? is only available from C++14 onwards
418 | std::enable_if_t<std::is_convertible<T*, U*>::value || std::is_convertible<U*,T*>::value, bool>
| ^~~
/usr/include/dlib/algs.h:484:10: error: ?enable_if_t? in namespace ?std? does not name a template type
484 | std::enable_if_t<std::is_floating_point<T>::value, bool> is_finite(T value)
| ^~~~~~~~~~~
/usr/include/dlib/algs.h:484:5: note: ?std::enable_if_t? is only available from C++14 onwards
484 | std::enable_if_t<std::is_floating_point<T>::value, bool> is_finite(T value)
| ^~~
/usr/include/dlib/algs.h:497:10: error: ?enable_if_t? in namespace ?std? does not name a template type
497 | std::enable_if_t<std::is_integral<T>::value, bool> is_finite(T value)
| ^~~~~~~~~~~
/usr/include/dlib/algs.h:497:5: note: ?std::enable_if_t? is only available from C++14 onwards
497 | std::enable_if_t<std::is_integral<T>::value, bool> is_finite(T value)
| ^~~
/usr/include/dlib/algs.h:898:61: error: ?std::index_sequence? has not been declared
898 | constexpr void for_each_impl(Tuple&& t, F&& f, std::index_sequence<I...>)
| ^~~~~~~~~~~~~~
/usr/include/dlib/algs.h:898:75: error: expected ?,? or ?...? before ?<? token
898 | constexpr void for_each_impl(Tuple&& t, F&& f, std::index_sequence<I...>)
| ^
/usr/include/dlib/algs.h: In function ?constexpr void dlib::for_each_in_tuple(Tuple&&, F&&)?:
/usr/include/dlib/algs.h:912:36: error: ?make_index_sequence? is not a member of ?std?
912 | std::make_index_sequence<std::tuple_size<std::remove_reference_t<Tuple>>::value>{});
| ^~~~~~~~~~~~~~~~~~~
/usr/include/dlib/algs.h:912:36: note: ?std::make_index_sequence? is only available from C++14 onwards
/usr/include/dlib/algs.h:912:77: error: ?remove_reference_t? is not a member of ?std?; did you mean ?remove_reference??
912 | std::make_index_sequence<std::tuple_size<std::remove_reference_t<Tuple>>::value>{});
| ^~~~~~~~~~~~~~~~~~
| remove_reference
/usr/include/dlib/algs.h:912:77: error: ?remove_reference_t? is not a member of ?std?; did you mean ?remove_reference??
912 | std::make_index_sequence<std::tuple_size<std::remove_reference_t<Tuple>>::value>{});
| ^~~~~~~~~~~~~~~~~~
| remove_reference
/usr/include/dlib/algs.h:912:96: error: template argument 1 is invalid
912 | std::make_index_sequence<std::tuple_size<std::remove_reference_t<Tuple>>::value>{});
| ^~~~~
/usr/include/dlib/algs.h:912:105: error: ?::value? has not been declared
912 | std::make_index_sequence<std::tuple_size<std::remove_reference_t<Tuple>>::value>{});
| ^~~~~
/usr/include/dlib/algs.h:912:111: error: expected primary-expression before ?{? token
912 | std::make_index_sequence<std::tuple_size<std::remove_reference_t<Tuple>>::value>{});
| ^
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -mavx512f -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o utils/libRNA_utils_avx512_la-higher_order_functions_avx512.lo `test -f 'utils/higher_order_functions_avx512.c' || echo './'`utils/higher_order_functions_avx512.c
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o special_const.lo special_const.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -mavx512f -I/usr/include/json-c/ -I/usr/include/libsvm/ -c utils/higher_order_functions_avx512.c -fPIC -DPIC -o utils/.libs/libRNA_utils_avx512_la-higher_order_functions_avx512.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -msse4.1 -I/usr/include/json-c/ -I/usr/include/libsvm/ -c utils/higher_order_functions_sse41.c -fPIC -DPIC -o utils/libRNA_utils_sse41_la-higher_order_functions_sse41.o >/dev/null 2>&1
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c special_const.c -fPIC -DPIC -o .libs/special_const.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c special_const.c -fPIC -DPIC -o special_const.o >/dev/null 2>&1
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o constraints/constraints.lo constraints/constraints.c
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o constraints/SHAPE.lo constraints/SHAPE.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c constraints/constraints.c -fPIC -DPIC -o constraints/.libs/constraints.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c constraints/SHAPE.c -fPIC -DPIC -o constraints/.libs/SHAPE.o
In file included from /usr/include/dlib/unicode.h:6,
from /usr/include/dlib/serialize.h:248,
from /usr/include/dlib/matrix/matrix.h:9:
/usr/include/dlib/unicode/unicode.h: In function ?void dlib::convert_to_utf32(forward_iterator, forward_iterator, unary_op)?:
/usr/include/dlib/unicode/unicode.h:651:32: error: ?decay_t? in namespace ?std? does not name a template type; did you mean ?decay??
651 | using char_type = std::decay_t<decltype(*ibegin)>;
| ^~~~~~~
| decay
/usr/include/dlib/unicode/unicode.h:652:36: error: ?char_type? was not declared in this scope
652 | static_assert(std::is_same<char_type, char>::value ||
| ^~~~~~~~~
/usr/include/dlib/unicode/unicode.h:652:51: error: template argument 1 is invalid
652 | static_assert(std::is_same<char_type, char>::value ||
| ^
/usr/include/dlib/unicode/unicode.h:657:52: error: expected initializer before ?)? token
657 | if (std::is_same<char_type, unichar>::value)
| ^
/usr/include/dlib/unicode/unicode.h:664:52: error: expected initializer before ?)? token
664 | if (std::is_same<char_type, wchar_t>::value)
| ^
/usr/include/dlib/unicode/unicode.h:694:49: error: expected initializer before ?)? token
694 | if (std::is_same<char_type, char>::value)
| ^
/usr/include/dlib/serialize.h: In function ?void dlib::serialize(const std::tuple<_Elements ...>&, std::ostream&)?:
/usr/include/dlib/serialize.h:1155:41: error: use of ?auto? in lambda parameter declaration only available with ?-std=c++14? or ?-std=gnu++14?
1155 | for_each_in_tuple(item, [&](auto&& x) {
| ^~~~
/usr/include/dlib/serialize.h: In function ?void dlib::deserialize(std::tuple<_Elements ...>&, std::istream&)?:
/usr/include/dlib/serialize.h:1171:41: error: use of ?auto? in lambda parameter declaration only available with ?-std=c++14? or ?-std=gnu++14?
1171 | for_each_in_tuple(item, [&](auto&& x) {
| ^~~~
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c constraints/constraints.c -fPIC -DPIC -o constraints/constraints.o >/dev/null 2>&1
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c constraints/SHAPE.c -fPIC -DPIC -o constraints/SHAPE.o >/dev/null 2>&1
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o constraints/hard.lo constraints/hard.c
In file included from /usr/include/dlib/matrix/matrix_utilities.h:11,
from /usr/include/dlib/matrix.h:7:
/usr/include/dlib/pixel.h: At global scope:
/usr/include/dlib/pixel.h:137:33: error: ?enable_if_t? in namespace ?std? does not name a template type
137 | using is_pixel_check = std::enable_if_t<is_pixel_type<Pixel>::value, bool>;
| ^~~~~~~~~~~
/usr/include/dlib/pixel.h:137:28: note: ?std::enable_if_t? is only available from C++14 onwards
137 | using is_pixel_check = std::enable_if_t<is_pixel_type<Pixel>::value, bool>;
| ^~~
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c constraints/hard.c -fPIC -DPIC -o constraints/.libs/hard.o
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o constraints/soft.lo constraints/soft.c
In file included from /usr/include/dlib/geometry/rectangle.h:11,
from /usr/include/dlib/array2d/array2d_kernel.h:10,
from /usr/include/dlib/array2d.h:7,
from /usr/include/dlib/matrix/matrix_mat.h:10,
from /usr/include/dlib/matrix/matrix_utilities.h:20:
/usr/include/dlib/geometry/vector.h:1323:14: error: ?enable_if_t? in namespace ?std? does not name a template type
1323 | std::enable_if_t<std::is_same<T, point>::value || std::is_same<T, dpoint>::value, points_orientation>
| ^~~~~~~~~~~
/usr/include/dlib/geometry/vector.h:1323:9: note: ?std::enable_if_t? is only available from C++14 onwards
1323 | std::enable_if_t<std::is_same<T, point>::value || std::is_same<T, dpoint>::value, points_orientation>
| ^~~
/usr/include/dlib/geometry/vector.h: In function ?std::vector<CharType> dlib::find_convex_hull(std::vector<CharType>&)?:
/usr/include/dlib/geometry/vector.h:1341:82: error: use of ?auto? in lambda parameter declaration only available with ?-std=c++14? or ?-std=gnu++14?
1341 | const auto p0 = *std::min_element(points.begin(), points.end(), [](const auto& a, const auto& b){
| ^~~~
/usr/include/dlib/geometry/vector.h:1341:97: error: use of ?auto? in lambda parameter declaration only available with ?-std=c++14? or ?-std=gnu++14?
1341 | const auto p0 = *std::min_element(points.begin(), points.end(), [](const auto& a, const auto& b){
| ^~~~
/usr/include/dlib/geometry/vector.h: In lambda function:
/usr/include/dlib/geometry/vector.h:1342:37: error: request for member ?y? in ?a?, which is of non-class type ?const int?
1342 | return std::make_pair(a.y(), a.x()) < std::make_pair(b.y(), b.x());
| ^
/usr/include/dlib/geometry/vector.h:1342:44: error: request for member ?x? in ?a?, which is of non-class type ?const int?
1342 | return std::make_pair(a.y(), a.x()) < std::make_pair(b.y(), b.x());
| ^
/usr/include/dlib/geometry/vector.h:1342:68: error: request for member ?y? in ?b?, which is of non-class type ?const int?
1342 | return std::make_pair(a.y(), a.x()) < std::make_pair(b.y(), b.x());
| ^
/usr/include/dlib/geometry/vector.h:1342:75: error: request for member ?x? in ?b?, which is of non-class type ?const int?
1342 | return std::make_pair(a.y(), a.x()) < std::make_pair(b.y(), b.x());
| ^
/usr/include/dlib/geometry/vector.h: In function ?std::vector<CharType> dlib::find_convex_hull(std::vector<CharType>&)?:
/usr/include/dlib/geometry/vector.h:1346:61: error: use of ?auto? in lambda parameter declaration only available with ?-std=c++14? or ?-std=gnu++14?
1346 | std::sort(points.begin(), points.end(), [&p0](const auto& a, const auto& b){
| ^~~~
/usr/include/dlib/geometry/vector.h:1346:76: error: use of ?auto? in lambda parameter declaration only available with ?-std=c++14? or ?-std=gnu++14?
1346 | std::sort(points.begin(), points.end(), [&p0](const auto& a, const auto& b){
| ^~~~
/usr/include/dlib/geometry/vector.h: In lambda function:
/usr/include/dlib/geometry/vector.h:1347:27: error: ?find_points_orientation? is not a member of ?dlib::impl?; did you mean ?points_orientation??
1347 | switch (impl::find_points_orientation(p0, a, b))
| ^~~~~~~~~~~~~~~~~~~~~~~
| points_orientation
/usr/include/dlib/geometry/vector.h: In function ?std::vector<CharType> dlib::find_convex_hull(std::vector<CharType>&)?:
/usr/include/dlib/geometry/vector.h:1364:23: error: ?find_points_orientation? is not a member of ?dlib::impl?; did you mean ?points_orientation??
1364 | impl::find_points_orientation(hull.at(hull.size() - 2), hull.back(), p) != impl::points_orientation::clockwise
| ^~~~~~~~~~~~~~~~~~~~~~~
| points_orientation
In file included from /usr/include/dlib/geometry/rectangle.h:12:
/usr/include/dlib/image_processing/generic_image.h: At global scope:
/usr/include/dlib/image_processing/generic_image.h:171:54: error: ?is_pixel_check? was not declared in this scope
171 | struct is_image_type<Container, dlib::void_t<is_pixel_check<pixel_type_t<Container>>>> : std::true_type{};
| ^~~~~~~~~~~~~~
/usr/include/dlib/image_processing/generic_image.h:171:91: error: template argument 1 is invalid
171 | struct is_image_type<Container, dlib::void_t<is_pixel_check<pixel_type_t<Container>>>> : std::true_type{};
| ^~
/usr/include/dlib/image_processing/generic_image.h:171:47: error: template argument 2 is invalid
171 | struct is_image_type<Container, dlib::void_t<is_pixel_check<pixel_type_t<Container>>>> : std::true_type{};
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/dlib/image_processing/generic_image.h:171:93: error: expected unqualified-id before ?>? token
171 | struct is_image_type<Container, dlib::void_t<is_pixel_check<pixel_type_t<Container>>>> : std::true_type{};
| ^~
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -mavx512f -I/usr/include/json-c/ -I/usr/include/libsvm/ -c utils/higher_order_functions_avx512.c -fPIC -DPIC -o utils/libRNA_utils_avx512_la-higher_order_functions_avx512.o >/dev/null 2>&1
/usr/include/dlib/image_processing/generic_image.h:189:33: error: ?enable_if_t? in namespace ?std? does not name a template type
189 | using is_image_check = std::enable_if_t<is_image_type<Container>::value, bool>;
| ^~~~~~~~~~~
/usr/include/dlib/image_processing/generic_image.h:189:28: note: ?std::enable_if_t? is only available from C++14 onwards
189 | using is_image_check = std::enable_if_t<is_image_type<Container>::value, bool>;
| ^~~
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c constraints/soft.c -fPIC -DPIC -o constraints/.libs/soft.o
/usr/include/dlib/matrix/matrix_utilities.h:4536:48: error: ?is_reference_type? was not declared in this scope
4536 | typedef typename type_selector<T1, T2, is_reference_type<T1>::value && is_reference_type<T3>::value>::type const_ret_type;
| ^~~~~~~~~~~~~~~~~
/usr/include/dlib/matrix/matrix_utilities.h:4536:68: error: template argument 3 is invalid
4536 | typedef typename type_selector<T1, T2, is_reference_type<T1>::value && is_reference_type<T3>::value>::type const_ret_type;
| ^
/usr/include/dlib/matrix/matrix_utilities.h:4536:26: error: expected nested-name-specifier
4536 | typedef typename type_selector<T1, T2, is_reference_type<T1>::value && is_reference_type<T3>::value>::type const_ret_type;
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/dlib/matrix/matrix_utilities.h:4536:26: error: typedef name may not be a nested-name-specifier
/usr/include/dlib/matrix/matrix_utilities.h:4536:71: error: expected ?;? at end of member declaration
4536 | typedef typename type_selector<T1, T2, is_reference_type<T1>::value && is_reference_type<T3>::value>::type const_ret_type;
| ^~~~~
| ;
/usr/include/dlib/matrix/matrix_utilities.h:4536:80: error: expected ?;? at end of member declaration
4536 | typedef typename type_selector<T1, T2, is_reference_type<T1>::value && is_reference_type<T3>::value>::type const_ret_type;
| ^~~~~~~~~~~~~~~~~
| ;
/usr/include/dlib/matrix/matrix_utilities.h:4536:97: error: expected unqualified-id before ?<? token
4536 | typedef typename type_selector<T1, T2, is_reference_type<T1>::value && is_reference_type<T3>::value>::type const_ret_type;
| ^
/usr/include/dlib/matrix/matrix_utilities.h:4545:9: error: ?const_ret_type? does not name a type
4545 | const_ret_type apply (long r, long c) const
| ^~~~~~~~~~~~~~
/usr/include/dlib/matrix/matrix_utilities.h:4611:48: error: ?is_reference_type? was not declared in this scope
4611 | typedef typename type_selector<T1, T2, is_reference_type<T1>::value && is_reference_type<T3>::value>::type const_ret_type;
| ^~~~~~~~~~~~~~~~~
/usr/include/dlib/matrix/matrix_utilities.h:4611:68: error: template argument 3 is invalid
4611 | typedef typename type_selector<T1, T2, is_reference_type<T1>::value && is_reference_type<T3>::value>::type const_ret_type;
| ^
/usr/include/dlib/matrix/matrix_utilities.h:4611:26: error: expected nested-name-specifier
4611 | typedef typename type_selector<T1, T2, is_reference_type<T1>::value && is_reference_type<T3>::value>::type const_ret_type;
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/dlib/matrix/matrix_utilities.h:4611:26: error: typedef name may not be a nested-name-specifier
/usr/include/dlib/matrix/matrix_utilities.h:4611:71: error: expected ?;? at end of member declaration
4611 | typedef typename type_selector<T1, T2, is_reference_type<T1>::value && is_reference_type<T3>::value>::type const_ret_type;
| ^~~~~
| ;
/usr/include/dlib/matrix/matrix_utilities.h:4611:80: error: expected ?;? at end of member declaration
4611 | typedef typename type_selector<T1, T2, is_reference_type<T1>::value && is_reference_type<T3>::value>::type const_ret_type;
| ^~~~~~~~~~~~~~~~~
| ;
/usr/include/dlib/matrix/matrix_utilities.h:4611:97: error: expected unqualified-id before ?<? token
4611 | typedef typename type_selector<T1, T2, is_reference_type<T1>::value && is_reference_type<T3>::value>::type const_ret_type;
| ^
/usr/include/dlib/matrix/matrix_utilities.h:4622:9: error: ?const_ret_type? does not name a type
4622 | const_ret_type apply ( long r, long c) const
| ^~~~~~~~~~~~~~
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c constraints/hard.c -fPIC -DPIC -o constraints/hard.o >/dev/null 2>&1
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c constraints/soft.c -fPIC -DPIC -o constraints/soft.o >/dev/null 2>&1
In file included from /usr/include/dlib/member_function_pointer.h:6,
from /usr/include/dlib/threads/threads_kernel_shared.h:11,
from /usr/include/dlib/threads/threads_kernel_2.h:173,
from /usr/include/dlib/threads/posix.h:4,
from /usr/include/dlib/threads/threads_kernel.h:13,
from /usr/include/dlib/threads.h:11,
from /usr/include/dlib/matrix/matrix_la.h:25,
from /usr/include/dlib/matrix.h:11:
/usr/include/dlib/member_function_pointer/member_function_pointer_kernel_1.h:259:51: error: ?is_const_type? was not declared in this scope; did you mean ?is_float_type??
259 | template <typename T> typename disable_if<is_const_type<T>,void>::type
| ^~~~~~~~~~~~~
| is_float_type
/usr/include/dlib/member_function_pointer/member_function_pointer_kernel_1.h:259:66: error: template argument 1 is invalid
259 | template <typename T> typename disable_if<is_const_type<T>,void>::type
| ^
/usr/include/dlib/member_function_pointer/member_function_pointer_kernel_1.h:259:40: error: expected nested-name-specifier
259 | template <typename T> typename disable_if<is_const_type<T>,void>::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/dlib/member_function_pointer/member_function_pointer_kernel_1.h:317:51: error: ?is_const_type? was not declared in this scope; did you mean ?is_float_type??
317 | template <typename T> typename disable_if<is_const_type<T>,void>::type
| ^~~~~~~~~~~~~
| is_float_type
/usr/include/dlib/member_function_pointer/member_function_pointer_kernel_1.h:317:66: error: template argument 1 is invalid
317 | template <typename T> typename disable_if<is_const_type<T>,void>::type
| ^
/usr/include/dlib/member_function_pointer/member_function_pointer_kernel_1.h:317:40: error: expected nested-name-specifier
317 | template <typename T> typename disable_if<is_const_type<T>,void>::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/dlib/member_function_pointer/member_function_pointer_kernel_1.h:375:51: error: ?is_const_type? was not declared in this scope; did you mean ?is_float_type??
375 | template <typename T> typename disable_if<is_const_type<T>,void>::type
| ^~~~~~~~~~~~~
| is_float_type
/usr/include/dlib/member_function_pointer/member_function_pointer_kernel_1.h:375:66: error: template argument 1 is invalid
375 | template <typename T> typename disable_if<is_const_type<T>,void>::type
| ^
/usr/include/dlib/member_function_pointer/member_function_pointer_kernel_1.h:375:40: error: expected nested-name-specifier
375 | template <typename T> typename disable_if<is_const_type<T>,void>::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/dlib/member_function_pointer/member_function_pointer_kernel_1.h:434:51: error: ?is_const_type? was not declared in this scope; did you mean ?is_float_type??
434 | template <typename T> typename disable_if<is_const_type<T>,void>::type
| ^~~~~~~~~~~~~
| is_float_type
/usr/include/dlib/member_function_pointer/member_function_pointer_kernel_1.h:434:66: error: template argument 1 is invalid
434 | template <typename T> typename disable_if<is_const_type<T>,void>::type
| ^
/usr/include/dlib/member_function_pointer/member_function_pointer_kernel_1.h:434:40: error: expected nested-name-specifier
434 | template <typename T> typename disable_if<is_const_type<T>,void>::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/dlib/member_function_pointer/member_function_pointer_kernel_1.h:495:51: error: ?is_const_type? was not declared in this scope; did you mean ?is_float_type??
495 | template <typename T> typename disable_if<is_const_type<T>,void>::type
| ^~~~~~~~~~~~~
| is_float_type
/usr/include/dlib/member_function_pointer/member_function_pointer_kernel_1.h:495:66: error: template argument 1 is invalid
495 | template <typename T> typename disable_if<is_const_type<T>,void>::type
| ^
/usr/include/dlib/member_function_pointer/member_function_pointer_kernel_1.h:495:40: error: expected nested-name-specifier
495 | template <typename T> typename disable_if<is_const_type<T>,void>::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o constraints/ligand.lo constraints/ligand.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c constraints/ligand.c -fPIC -DPIC -o constraints/.libs/ligand.o
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o datastructures/basic_datastructures.lo datastructures/basic_datastructures.c
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o datastructures/lists.lo datastructures/lists.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c datastructures/basic_datastructures.c -fPIC -DPIC -o datastructures/.libs/basic_datastructures.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c datastructures/lists.c -fPIC -DPIC -o datastructures/.libs/lists.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c datastructures/basic_datastructures.c -fPIC -DPIC -o datastructures/basic_datastructures.o >/dev/null 2>&1
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c datastructures/lists.c -fPIC -DPIC -o datastructures/lists.o >/dev/null 2>&1
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o datastructures/char_stream.lo datastructures/char_stream.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c constraints/ligand.c -fPIC -DPIC -o constraints/ligand.o >/dev/null 2>&1
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c datastructures/char_stream.c -fPIC -DPIC -o datastructures/.libs/char_stream.o
In file included from /usr/include/dlib/math.h:6,
from /usr/include/dlib/matrix/matrix_fft.h:10,
from /usr/include/dlib/matrix/matrix_conv.h:8,
from /usr/include/dlib/matrix.h:13:
/usr/include/dlib/math/bessel.h:11:5: error: ?cyl_bessel_i? function uses ?auto? type specifier without trailing return type
11 | auto cyl_bessel_i(R1 nu, R2 x)
| ^~~~
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o datastructures/stream_output.lo datastructures/stream_output.c
/usr/include/dlib/math/bessel.h:11:5: note: deduced return type only available with ?-std=c++14? or ?-std=gnu++14?
/usr/include/dlib/math/bessel.h: In function ?auto dlib::cyl_bessel_i(R1, R2)?:
/usr/include/dlib/math/bessel.h:20:24: error: ?common_type_t? in namespace ?std? does not name a template type; did you mean ?common_type??
20 | using R = std::common_type_t<R1,R2>;
| ^~~~~~~~~~~~~
| common_type
/usr/include/dlib/math/bessel.h:21:38: error: ?R? was not declared in this scope
21 | return detail::cyl_bessel_i((R)nu, (R)x);
| ^
/usr/include/dlib/math/bessel.h:21:47: error: expected ?)? before ?x?
21 | return detail::cyl_bessel_i((R)nu, (R)x);
| ~ ^
| )
/usr/include/dlib/math/bessel.h: At global scope:
/usr/include/dlib/math/bessel.h:25:5: error: ?cyl_bessel_j? function uses ?auto? type specifier without trailing return type
25 | auto cyl_bessel_j(R1 nu, R2 x)
| ^~~~
/usr/include/dlib/math/bessel.h:25:5: note: deduced return type only available with ?-std=c++14? or ?-std=gnu++14?
/usr/include/dlib/math/bessel.h: In function ?auto dlib::cyl_bessel_j(R1, R2)?:
/usr/include/dlib/math/bessel.h:34:24: error: ?common_type_t? in namespace ?std? does not name a template type; did you mean ?common_type??
34 | using R = std::common_type_t<R1,R2>;
| ^~~~~~~~~~~~~
| common_type
/usr/include/dlib/math/bessel.h:35:38: error: ?R? was not declared in this scope
35 | return detail::cyl_bessel_j((R)nu, (R)x);
| ^
/usr/include/dlib/math/bessel.h:35:47: error: expected ?)? before ?x?
35 | return detail::cyl_bessel_j((R)nu, (R)x);
| ~ ^
| )
In file included from /usr/include/dlib/math.h:7:
/usr/include/dlib/math/windows.h: In function ?double dlib::kaiser(double, double, beta_t)?:
/usr/include/dlib/math/windows.h:77:48: error: void value not ignored as it ought to be
77 | const double a = dlib::cyl_bessel_i(0, beta.v*std::sqrt(1-r*r));
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/dlib/math/windows.h:78:48: error: void value not ignored as it ought to be
78 | const double b = dlib::cyl_bessel_i(0, beta.v);
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
/usr/include/dlib/matrix/matrix_fft.h: At global scope:
/usr/include/dlib/matrix/matrix_fft.h:176:13: error: ?operator()? function uses ?auto? type specifier without trailing return type
176 | auto operator()(const MAT& mat) const { return dlib::fft(mat); }
| ^~~~
/usr/include/dlib/matrix/matrix_fft.h:176:13: note: deduced return type only available with ?-std=c++14? or ?-std=gnu++14?
/usr/include/dlib/matrix/matrix_fft.h:179:13: error: ?operator()? function uses ?auto? type specifier without trailing return type
179 | auto operator()(const MAT& mat) const { return dlib::fft(dlib::complex_matrix(mat)); }
| ^~~~
/usr/include/dlib/matrix/matrix_fft.h:179:13: note: deduced return type only available with ?-std=c++14? or ?-std=gnu++14?
/usr/include/dlib/matrix/matrix_fft.h:187:13: error: ?operator()? function uses ?auto? type specifier without trailing return type
187 | auto operator()(const MAT& mat) const { return dlib::fftr(mat); }
| ^~~~
/usr/include/dlib/matrix/matrix_fft.h:187:13: note: deduced return type only available with ?-std=c++14? or ?-std=gnu++14?
/usr/include/dlib/matrix/matrix_fft.h:195:13: error: ?operator()? function uses ?auto? type specifier without trailing return type
195 | auto operator()(const MAT& mat) const { return dlib::ifft(mat); }
| ^~~~
/usr/include/dlib/matrix/matrix_fft.h:195:13: note: deduced return type only available with ?-std=c++14? or ?-std=gnu++14?
/usr/include/dlib/matrix/matrix_fft.h:201:13: error: ?operator()? function uses ?auto? type specifier without trailing return type
201 | auto operator()(const MAT& mat) const { return dlib::ifftr(mat); }
| ^~~~
/usr/include/dlib/matrix/matrix_fft.h:201:13: note: deduced return type only available with ?-std=c++14? or ?-std=gnu++14?
/usr/include/dlib/matrix/matrix_fft.h:209:9: error: ?stft_impl? function uses ?auto? type specifier without trailing return type
209 | auto stft_impl (
| ^~~~
/usr/include/dlib/matrix/matrix_fft.h:209:9: note: deduced return type only available with ?-std=c++14? or ?-std=gnu++14?
/usr/include/dlib/matrix/matrix_fft.h:261:9: error: ?istft_impl? function uses ?auto? type specifier without trailing return type
261 | auto istft_impl (
| ^~~~
/usr/include/dlib/matrix/matrix_fft.h:261:9: note: deduced return type only available with ?-std=c++14? or ?-std=gnu++14?
/usr/include/dlib/matrix/matrix_fft.h:303:12: error: ?make_hann? function uses ?auto? type specifier without trailing return type
303 | inline auto make_hann()
| ^~~~
/usr/include/dlib/matrix/matrix_fft.h:303:12: note: deduced return type only available with ?-std=c++14? or ?-std=gnu++14?
/usr/include/dlib/matrix/matrix_fft.h:308:12: error: ?make_blackman? function uses ?auto? type specifier without trailing return type
308 | inline auto make_blackman()
| ^~~~
/usr/include/dlib/matrix/matrix_fft.h:308:12: note: deduced return type only available with ?-std=c++14? or ?-std=gnu++14?
/usr/include/dlib/matrix/matrix_fft.h:313:12: error: ?make_blackman_nuttall? function uses ?auto? type specifier without trailing return type
313 | inline auto make_blackman_nuttall()
| ^~~~
/usr/include/dlib/matrix/matrix_fft.h:313:12: note: deduced return type only available with ?-std=c++14? or ?-std=gnu++14?
/usr/include/dlib/matrix/matrix_fft.h:318:12: error: ?make_blackman_harris? function uses ?auto? type specifier without trailing return type
318 | inline auto make_blackman_harris()
| ^~~~
/usr/include/dlib/matrix/matrix_fft.h:318:12: note: deduced return type only available with ?-std=c++14? or ?-std=gnu++14?
/usr/include/dlib/matrix/matrix_fft.h:323:12: error: ?make_blackman_harris7? function uses ?auto? type specifier without trailing return type
323 | inline auto make_blackman_harris7()
| ^~~~
/usr/include/dlib/matrix/matrix_fft.h:323:12: note: deduced return type only available with ?-std=c++14? or ?-std=gnu++14?
/usr/include/dlib/matrix/matrix_fft.h:328:12: error: ?make_kaiser? function uses ?auto? type specifier without trailing return type
328 | inline auto make_kaiser(beta_t beta)
| ^~~~
/usr/include/dlib/matrix/matrix_fft.h:328:12: note: deduced return type only available with ?-std=c++14? or ?-std=gnu++14?
/usr/include/dlib/matrix/matrix_fft.h:336:5: error: ?stft? function uses ?auto? type specifier without trailing return type
336 | auto stft (
| ^~~~
/usr/include/dlib/matrix/matrix_fft.h:336:5: note: deduced return type only available with ?-std=c++14? or ?-std=gnu++14?
/usr/include/dlib/matrix/matrix_fft.h:350:5: error: ?stft? function uses ?auto? type specifier without trailing return type
350 | auto stft (
| ^~~~
/usr/include/dlib/matrix/matrix_fft.h:350:5: note: deduced return type only available with ?-std=c++14? or ?-std=gnu++14?
/usr/include/dlib/matrix/matrix_fft.h:364:5: error: ?istft? function uses ?auto? type specifier without trailing return type
364 | auto istft (
| ^~~~
/usr/include/dlib/matrix/matrix_fft.h:364:5: note: deduced return type only available with ?-std=c++14? or ?-std=gnu++14?
/usr/include/dlib/matrix/matrix_fft.h:378:5: error: ?stftr? function uses ?auto? type specifier without trailing return type
378 | auto stftr (
| ^~~~
/usr/include/dlib/matrix/matrix_fft.h:378:5: note: deduced return type only available with ?-std=c++14? or ?-std=gnu++14?
/usr/include/dlib/matrix/matrix_fft.h:392:5: error: ?stftr? function uses ?auto? type specifier without trailing return type
392 | auto stftr (
| ^~~~
/usr/include/dlib/matrix/matrix_fft.h:392:5: note: deduced return type only available with ?-std=c++14? or ?-std=gnu++14?
/usr/include/dlib/matrix/matrix_fft.h:406:5: error: ?istftr? function uses ?auto? type specifier without trailing return type
406 | auto istftr (
| ^~~~
/usr/include/dlib/matrix/matrix_fft.h:406:5: note: deduced return type only available with ?-std=c++14? or ?-std=gnu++14?
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c datastructures/stream_output.c -fPIC -DPIC -o datastructures/.libs/stream_output.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c datastructures/char_stream.c -fPIC -DPIC -o datastructures/char_stream.o >/dev/null 2>&1
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o datastructures/hash_tables.lo datastructures/hash_tables.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c datastructures/stream_output.c -fPIC -DPIC -o datastructures/stream_output.o >/dev/null 2>&1
/usr/include/dlib/optimization/optimization.h: In function ?double dlib::find_min(search_strategy_type, stop_strategy_type, const funct&, const funct_der&, T&, double)?:
/usr/include/dlib/optimization/optimization.h:179:23: error: no matching function for call to ?is_finite(double&)?
179 | if (!is_finite(f_value))
| ~~~~~~~~~^~~~~~~~~
/usr/include/dlib/matrix/matrix_utilities.h:103:17: note: candidate: ?template<class EXP> bool dlib::is_finite(const matrix_exp<EXP>&)?
103 | inline bool is_finite (
| ^~~~~~~~~
/usr/include/dlib/matrix/matrix_utilities.h:103:17: note: template argument deduction/substitution failed:
/usr/include/dlib/optimization/optimization.h:179:23: note: mismatched types ?const dlib::matrix_exp<EXP>? and ?double?
179 | if (!is_finite(f_value))
| ~~~~~~~~~^~~~~~~~~
/usr/include/dlib/optimization/optimization.h:199:27: error: no matching function for call to ?is_finite(double&)?
199 | if (!is_finite(f_value))
| ~~~~~~~~~^~~~~~~~~
/usr/include/dlib/matrix/matrix_utilities.h:103:17: note: candidate: ?template<class EXP> bool dlib::is_finite(const matrix_exp<EXP>&)?
103 | inline bool is_finite (
| ^~~~~~~~~
/usr/include/dlib/matrix/matrix_utilities.h:103:17: note: template argument deduction/substitution failed:
/usr/include/dlib/optimization/optimization.h:199:27: note: mismatched types ?const dlib::matrix_exp<EXP>? and ?double?
199 | if (!is_finite(f_value))
| ~~~~~~~~~^~~~~~~~~
/usr/include/dlib/optimization/optimization.h: In function ?double dlib::find_max(search_strategy_type, stop_strategy_type, const funct&, const funct_der&, T&, double)?:
/usr/include/dlib/optimization/optimization.h:245:23: error: no matching function for call to ?is_finite(double&)?
245 | if (!is_finite(f_value))
| ~~~~~~~~~^~~~~~~~~
/usr/include/dlib/matrix/matrix_utilities.h:103:17: note: candidate: ?template<class EXP> bool dlib::is_finite(const matrix_exp<EXP>&)?
103 | inline bool is_finite (
| ^~~~~~~~~
/usr/include/dlib/matrix/matrix_utilities.h:103:17: note: template argument deduction/substitution failed:
/usr/include/dlib/optimization/optimization.h:245:23: note: mismatched types ?const dlib::matrix_exp<EXP>? and ?double?
245 | if (!is_finite(f_value))
| ~~~~~~~~~^~~~~~~~~
/usr/include/dlib/optimization/optimization.h:271:27: error: no matching function for call to ?is_finite(double&)?
271 | if (!is_finite(f_value))
| ~~~~~~~~~^~~~~~~~~
/usr/include/dlib/matrix/matrix_utilities.h:103:17: note: candidate: ?template<class EXP> bool dlib::is_finite(const matrix_exp<EXP>&)?
103 | inline bool is_finite (
| ^~~~~~~~~
/usr/include/dlib/matrix/matrix_utilities.h:103:17: note: template argument deduction/substitution failed:
/usr/include/dlib/optimization/optimization.h:271:27: note: mismatched types ?const dlib::matrix_exp<EXP>? and ?double?
271 | if (!is_finite(f_value))
| ~~~~~~~~~^~~~~~~~~
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c datastructures/hash_tables.c -fPIC -DPIC -o datastructures/.libs/hash_tables.o
/usr/include/dlib/optimization/optimization.h: In function ?double dlib::find_min_using_approximate_derivatives(search_strategy_type, stop_strategy_type, const funct&, T&, double, double)?:
/usr/include/dlib/optimization/optimization.h:318:23: error: no matching function for call to ?is_finite(double&)?
318 | if (!is_finite(f_value))
| ~~~~~~~~~^~~~~~~~~
/usr/include/dlib/matrix/matrix_utilities.h:103:17: note: candidate: ?template<class EXP> bool dlib::is_finite(const matrix_exp<EXP>&)?
103 | inline bool is_finite (
| ^~~~~~~~~
/usr/include/dlib/matrix/matrix_utilities.h:103:17: note: template argument deduction/substitution failed:
/usr/include/dlib/optimization/optimization.h:318:23: note: mismatched types ?const dlib::matrix_exp<EXP>? and ?double?
318 | if (!is_finite(f_value))
| ~~~~~~~~~^~~~~~~~~
/usr/include/dlib/optimization/optimization.h:342:27: error: no matching function for call to ?is_finite(double&)?
342 | if (!is_finite(f_value))
| ~~~~~~~~~^~~~~~~~~
/usr/include/dlib/matrix/matrix_utilities.h:103:17: note: candidate: ?template<class EXP> bool dlib::is_finite(const matrix_exp<EXP>&)?
103 | inline bool is_finite (
| ^~~~~~~~~
/usr/include/dlib/matrix/matrix_utilities.h:103:17: note: template argument deduction/substitution failed:
/usr/include/dlib/optimization/optimization.h:342:27: note: mismatched types ?const dlib::matrix_exp<EXP>? and ?double?
342 | if (!is_finite(f_value))
| ~~~~~~~~~^~~~~~~~~
/usr/include/dlib/optimization/optimization.h: In function ?double dlib::find_min_box_constrained(search_strategy_type, stop_strategy_type, const funct&, const funct_der&, T&, const matrix_exp<EXPr>&, const matrix_exp<EXPc>&)?:
/usr/include/dlib/optimization/optimization.h:500:23: error: no matching function for call to ?is_finite(double&)?
500 | if (!is_finite(f_value))
| ~~~~~~~~~^~~~~~~~~
/usr/include/dlib/matrix/matrix_utilities.h:103:17: note: candidate: ?template<class EXP> bool dlib::is_finite(const matrix_exp<EXP>&)?
103 | inline bool is_finite (
| ^~~~~~~~~
/usr/include/dlib/matrix/matrix_utilities.h:103:17: note: template argument deduction/substitution failed:
/usr/include/dlib/optimization/optimization.h:500:23: note: mismatched types ?const dlib::matrix_exp<EXP>? and ?double?
500 | if (!is_finite(f_value))
| ~~~~~~~~~^~~~~~~~~
/usr/include/dlib/optimization/optimization.h:537:27: error: no matching function for call to ?is_finite(double&)?
537 | if (!is_finite(f_value))
| ~~~~~~~~~^~~~~~~~~
/usr/include/dlib/matrix/matrix_utilities.h:103:17: note: candidate: ?template<class EXP> bool dlib::is_finite(const matrix_exp<EXP>&)?
103 | inline bool is_finite (
| ^~~~~~~~~
/usr/include/dlib/matrix/matrix_utilities.h:103:17: note: template argument deduction/substitution failed:
/usr/include/dlib/optimization/optimization.h:537:27: note: mismatched types ?const dlib::matrix_exp<EXP>? and ?double?
537 | if (!is_finite(f_value))
| ~~~~~~~~~^~~~~~~~~
/usr/include/dlib/optimization/optimization.h: In function ?double dlib::find_max_box_constrained(search_strategy_type, stop_strategy_type, const funct&, const funct_der&, T&, const matrix_exp<EXPr>&, const matrix_exp<EXPc>&)?:
/usr/include/dlib/optimization/optimization.h:631:23: error: no matching function for call to ?is_finite(double&)?
631 | if (!is_finite(f_value))
| ~~~~~~~~~^~~~~~~~~
/usr/include/dlib/matrix/matrix_utilities.h:103:17: note: candidate: ?template<class EXP> bool dlib::is_finite(const matrix_exp<EXP>&)?
103 | inline bool is_finite (
| ^~~~~~~~~
/usr/include/dlib/matrix/matrix_utilities.h:103:17: note: template argument deduction/substitution failed:
/usr/include/dlib/optimization/optimization.h:631:23: note: mismatched types ?const dlib::matrix_exp<EXP>? and ?double?
631 | if (!is_finite(f_value))
| ~~~~~~~~~^~~~~~~~~
/usr/include/dlib/optimization/optimization.h:672:27: error: no matching function for call to ?is_finite(double&)?
672 | if (!is_finite(f_value))
| ~~~~~~~~~^~~~~~~~~
/usr/include/dlib/matrix/matrix_utilities.h:103:17: note: candidate: ?template<class EXP> bool dlib::is_finite(const matrix_exp<EXP>&)?
103 | inline bool is_finite (
| ^~~~~~~~~
/usr/include/dlib/matrix/matrix_utilities.h:103:17: note: template argument deduction/substitution failed:
/usr/include/dlib/optimization/optimization.h:672:27: note: mismatched types ?const dlib::matrix_exp<EXP>? and ?double?
672 | if (!is_finite(f_value))
| ~~~~~~~~~^~~~~~~~~
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o datastructures/heap.lo datastructures/heap.c
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o utils/utils.lo utils/utils.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c datastructures/hash_tables.c -fPIC -DPIC -o datastructures/hash_tables.o >/dev/null 2>&1
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c datastructures/heap.c -fPIC -DPIC -o datastructures/.libs/heap.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c utils/utils.c -fPIC -DPIC -o utils/.libs/utils.o
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o utils/string_utils.lo utils/string_utils.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c datastructures/heap.c -fPIC -DPIC -o datastructures/heap.o >/dev/null 2>&1
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c utils/string_utils.c -fPIC -DPIC -o utils/.libs/string_utils.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c utils/utils.c -fPIC -DPIC -o utils/utils.o >/dev/null 2>&1
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o utils/structure_utils.lo utils/structure_utils.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c utils/structure_utils.c -fPIC -DPIC -o utils/.libs/structure_utils.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c utils/string_utils.c -fPIC -DPIC -o utils/string_utils.o >/dev/null 2>&1
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o utils/structure_tree.lo utils/structure_tree.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c utils/structure_tree.c -fPIC -DPIC -o utils/.libs/structure_tree.o
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o utils/msa_utils.lo utils/msa_utils.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c utils/structure_tree.c -fPIC -DPIC -o utils/structure_tree.o >/dev/null 2>&1
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c utils/msa_utils.c -fPIC -DPIC -o utils/.libs/msa_utils.o
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o utils/higher_order_functions.lo utils/higher_order_functions.c
In file included from /usr/include/dlib/constexpr_if.h:6,
from /usr/include/dlib/metaprogramming.h:6,
from /usr/include/dlib/global_optimization/find_max_global.h:8,
from /usr/include/dlib/global_optimization.h:8,
from wrap_dlib.cpp:17:
/usr/include/dlib/overloaded.h: At global scope:
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:84: error: template argument 1 is invalid
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:84: error: template argument 1 is invalid
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c utils/structure_utils.c -fPIC -DPIC -o utils/structure_utils.o >/dev/null 2>&1
/usr/include/dlib/overloaded.h:116:84: error: template argument 1 is invalid
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:84: error: template argument 1 is invalid
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:84: error: template argument 1 is invalid
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:84: error: template argument 1 is invalid
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:84: error: template argument 1 is invalid
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:84: error: template argument 1 is invalid
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:84: error: template argument 1 is invalid
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:84: error: template argument 1 is invalid
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:84: error: template argument 1 is invalid
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:84: error: template argument 1 is invalid
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^
/usr/include/dlib/overloaded.h:116:97: error: template argument 1 is invalid
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:84: error: template argument 1 is invalid
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:84: error: template argument 1 is invalid
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:84: error: template argument 1 is invalid
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:84: error: template argument 1 is invalid
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c utils/higher_order_functions.c -fPIC -DPIC -o utils/.libs/higher_order_functions.o
/usr/include/dlib/overloaded.h:116:84: error: template argument 1 is invalid
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:84: error: template argument 1 is invalid
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:84: error: template argument 1 is invalid
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:84: error: template argument 1 is invalid
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:84: error: template argument 1 is invalid
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:84: error: template argument 1 is invalid
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:84: error: template argument 1 is invalid
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:84: error: template argument 1 is invalid
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^
/usr/include/dlib/overloaded.h:116:97: error: template argument 1 is invalid
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:84: error: template argument 1 is invalid
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:84: error: template argument 1 is invalid
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:84: error: template argument 1 is invalid
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:84: error: template argument 1 is invalid
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:84: error: template argument 1 is invalid
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:84: error: template argument 1 is invalid
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:84: error: template argument 1 is invalid
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:84: error: template argument 1 is invalid
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:84: error: template argument 1 is invalid
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:84: error: template argument 1 is invalid
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:84: error: template argument 1 is invalid
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:84: error: template argument 1 is invalid
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^
/usr/include/dlib/overloaded.h:116:97: error: template argument 1 is invalid
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:84: error: template argument 1 is invalid
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:84: error: template argument 1 is invalid
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:84: error: template argument 1 is invalid
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:84: error: template argument 1 is invalid
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:84: error: template argument 1 is invalid
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:84: error: template argument 1 is invalid
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:84: error: template argument 1 is invalid
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:84: error: template argument 1 is invalid
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:84: error: template argument 1 is invalid
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:84: error: template argument 1 is invalid
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:84: error: template argument 1 is invalid
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:84: error: template argument 1 is invalid
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^
/usr/include/dlib/overloaded.h:116:97: error: template argument 1 is invalid
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c utils/msa_utils.c -fPIC -DPIC -o utils/msa_utils.o >/dev/null 2>&1
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:84: error: template argument 1 is invalid
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:84: error: template argument 1 is invalid
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:84: error: template argument 1 is invalid
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:84: error: template argument 1 is invalid
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:84: error: template argument 1 is invalid
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c utils/higher_order_functions.c -fPIC -DPIC -o utils/higher_order_functions.o >/dev/null 2>&1
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:84: error: template argument 1 is invalid
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:84: error: template argument 1 is invalid
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:84: error: template argument 1 is invalid
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:84: error: template argument 1 is invalid
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:84: error: template argument 1 is invalid
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:84: error: template argument 1 is invalid
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:84: error: template argument 1 is invalid
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^
/usr/include/dlib/overloaded.h:116:97: error: template argument 1 is invalid
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^
/usr/include/dlib/overloaded.h:116:43: error: missing template arguments before ?<? token
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:84: error: template argument 1 is invalid
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:84: error: template argument 1 is invalid
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:84: error: template argument 1 is invalid
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:84: error: template argument 1 is invalid
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:84: error: template argument 1 is invalid
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^
/usr/include/dlib/overloaded.h:116:69: error: missing template arguments before ?<? token
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^
/usr/include/dlib/overloaded.h:116:75: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^~~~~~~
| decay
/usr/include/dlib/overloaded.h:116:84: error: expected primary-expression before ?>? token
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ^
/usr/include/dlib/overloaded.h:116:84: error: expected ?)? before ?>? token
116 | noexcept(std::is_nothrow_constructible<detail::overloaded_helper<std::decay_t<T>...>, T&&...>::value)
| ~ ^
| )
/usr/include/dlib/overloaded.h:116:84: error: expected initializer before ?>? token
/usr/include/dlib/constexpr_if.h:15:27: error: use of ?auto? in lambda parameter declaration only available with ?-std=c++14? or ?-std=gnu++14?
15 | const auto _ = [](auto&& arg) -> decltype(auto) { return std::forward<decltype(arg)>(arg); };
| ^~~~
/usr/include/dlib/constexpr_if.h:15:42: error: ?decltype(auto)? type specifier only available with ?-std=c++14? or ?-std=gnu++14?
15 | const auto _ = [](auto&& arg) -> decltype(auto) { return std::forward<decltype(arg)>(arg); };
| ^~~~~~~~
/usr/include/dlib/constexpr_if.h:21:15: error: ?bools? function uses ?auto? type specifier without trailing return type
21 | constexpr auto bools(std::integral_constant<bool, v>...)
| ^~~~
/usr/include/dlib/constexpr_if.h:21:15: note: deduced return type only available with ?-std=c++14? or ?-std=gnu++14?
/usr/include/dlib/constexpr_if.h:39:15: error: ?decltype(auto)? type specifier only available with ?-std=c++14? or ?-std=gnu++14?
39 | constexpr decltype(auto) switch_(
| ^~~~~~~~
In file included from /usr/include/dlib/metaprogramming.h:7:
/usr/include/dlib/functional.h:355:19: error: ?make_binder? function uses ?auto? type specifier without trailing return type
355 | constexpr auto make_binder(
| ^~~~
/usr/include/dlib/functional.h:355:19: note: deduced return type only available with ?-std=c++14? or ?-std=gnu++14?
/usr/include/dlib/functional.h: In function ?constexpr auto dlib::detail::make_binder(F&&, Args&& ...)?:
/usr/include/dlib/functional.h:360:46: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
360 | return binder_wrapper<Back, std::decay_t<F>, std::decay_t<Args>...>{std::forward<F>(func), std::make_tuple(std::forward<Args>(args)...)};
| ^~~~~~~
| decay
/usr/include/dlib/functional.h:360:46: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
360 | return binder_wrapper<Back, std::decay_t<F>, std::decay_t<Args>...>{std::forward<F>(func), std::make_tuple(std::forward<Args>(args)...)};
| ^~~~~~~
| decay
/usr/include/dlib/functional.h:360:55: error: template argument 2 is invalid
360 | return binder_wrapper<Back, std::decay_t<F>, std::decay_t<Args>...>{std::forward<F>(func), std::make_tuple(std::forward<Args>(args)...)};
| ^
/usr/include/dlib/functional.h:360:63: error: ?decay_t? is not a member of ?std?; did you mean ?decay??
360 | return binder_wrapper<Back, std::decay_t<F>, std::decay_t<Args>...>{std::forward<F>(func), std::make_tuple(std::forward<Args>(args)...)};
| ^~~~~~~
| decay
/usr/include/dlib/functional.h:360:75: error: expected primary-expression before ?>? token
360 | return binder_wrapper<Back, std::decay_t<F>, std::decay_t<Args>...>{std::forward<F>(func), std::make_tuple(std::forward<Args>(args)...)};
| ^
/usr/include/dlib/functional.h:360:75: error: expected ?;? before ?>? token
360 | return binder_wrapper<Back, std::decay_t<F>, std::decay_t<Args>...>{std::forward<F>(func), std::make_tuple(std::forward<Args>(args)...)};
| ^
| ;
/usr/include/dlib/functional.h:360:75: error: expected primary-expression before ?>? token
/usr/include/dlib/functional.h: At global scope:
/usr/include/dlib/functional.h:365:15: error: ?bind_front? function uses ?auto? type specifier without trailing return type
365 | constexpr auto bind_front(
| ^~~~
/usr/include/dlib/functional.h:365:15: note: deduced return type only available with ?-std=c++14? or ?-std=gnu++14?
/usr/include/dlib/functional.h:379:15: error: ?bind_back? function uses ?auto? type specifier without trailing return type
379 | constexpr auto bind_back(
| ^~~~
/usr/include/dlib/functional.h:379:15: note: deduced return type only available with ?-std=c++14? or ?-std=gnu++14?
/usr/include/dlib/metaprogramming.h: In function ?bool dlib::call_if_valid(Funct&&, Args&& ...)?:
/usr/include/dlib/metaprogramming.h:73:25: error: use of ?auto? in lambda parameter declaration only available with ?-std=c++14? or ?-std=gnu++14?
73 | [&](true_t, auto _) {
| ^~~~
/usr/include/dlib/metaprogramming.h:77:16: error: use of ?auto? in lambda parameter declaration only available with ?-std=c++14? or ?-std=gnu++14?
77 | [](auto...) {
| ^~~~
/usr/include/dlib/global_optimization/find_max_global.h: At global scope:
/usr/include/dlib/global_optimization/find_max_global.h:38:18: error: ?std::index_sequence? has not been declared
38 | std::index_sequence<indices...>
| ^~~~~~~~~~~~~~
/usr/include/dlib/global_optimization/find_max_global.h:38:32: error: expected ?,? or ?...? before ?<? token
38 | std::index_sequence<indices...>
| ^
/usr/include/dlib/global_optimization/find_max_global.h:55:107: error: ?make_index_sequence? is not a member of ?std?
55 | static auto go(T&& f, const matrix<double,0,1>& a) -> decltype(_cwv(std::forward<T>(f),a,std::make_index_sequence<max_unpack>{}))
| ^~~~~~~~~~~~~~~~~~~
/usr/include/dlib/global_optimization/find_max_global.h:55:107: note: ?std::make_index_sequence? is only available from C++14 onwards
/usr/include/dlib/global_optimization/find_max_global.h:55:107: error: ?make_index_sequence? is not a member of ?std?
/usr/include/dlib/global_optimization/find_max_global.h:55:107: note: ?std::make_index_sequence? is only available from C++14 onwards
/usr/include/dlib/global_optimization/find_max_global.h:55:138: error: expected primary-expression before ?{? token
55 | static auto go(T&& f, const matrix<double,0,1>& a) -> decltype(_cwv(std::forward<T>(f),a,std::make_index_sequence<max_unpack>{}))
| ^
/usr/include/dlib/global_optimization/find_max_global.h: In static member function ?static decltype (dlib::gopt_impl::_cwv(forward<T>(f), a, <expression error>)) dlib::gopt_impl::call_function_and_expand_args<max_unpack>::go(T&&, const dlib::matrix<double, 0, 1>&)?:
/usr/include/dlib/global_optimization/find_max_global.h:57:56: error: ?make_index_sequence? is not a member of ?std?
57 | return _cwv(std::forward<T>(f),a, std::make_index_sequence<max_unpack>{});
| ^~~~~~~~~~~~~~~~~~~
/usr/include/dlib/global_optimization/find_max_global.h:57:56: note: ?std::make_index_sequence? is only available from C++14 onwards
/usr/include/dlib/global_optimization/find_max_global.h:57:87: error: expected primary-expression before ?{? token
57 | return _cwv(std::forward<T>(f),a, std::make_index_sequence<max_unpack>{});
| ^
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o utils/cpu.lo utils/cpu.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c utils/cpu.c -fPIC -DPIC -o utils/.libs/cpu.o
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o utils/units.lo utils/units.c
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o io/io_utils.lo io/io_utils.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c utils/cpu.c -fPIC -DPIC -o utils/cpu.o >/dev/null 2>&1
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c utils/units.c -fPIC -DPIC -o utils/.libs/units.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c io/io_utils.c -fPIC -DPIC -o io/.libs/io_utils.o
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o io/file_formats.lo io/file_formats.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c utils/units.c -fPIC -DPIC -o utils/units.o >/dev/null 2>&1
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c io/file_formats.c -fPIC -DPIC -o io/.libs/file_formats.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c io/io_utils.c -fPIC -DPIC -o io/io_utils.o >/dev/null 2>&1
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o io/file_formats_msa.lo io/file_formats_msa.c
In file included from /usr/include/dlib/optimization.h:12:
/usr/include/dlib/optimization/optimization_trust_region.h: In instantiation of ?double dlib::find_min_trust_region(stop_strategy_type, const funct_model&, typename funct_model::column_vector&, double) [with stop_strategy_type = objective_delta_stop_strategy; funct_model = h_model; typename funct_model::column_vector = matrix<double, 0, 1>]?:
wrap_dlib.cpp:347:24: required from here
/usr/include/dlib/optimization/optimization_trust_region.h:459:27: error: no matching function for call to ?is_finite(const type&)?
459 | if (!is_finite(rho))
| ~~~~~~~~~^~~~~
/usr/include/dlib/matrix/matrix_utilities.h:103:17: note: candidate: ?template<class EXP> bool dlib::is_finite(const matrix_exp<EXP>&)?
103 | inline bool is_finite (
| ^~~~~~~~~
/usr/include/dlib/matrix/matrix_utilities.h:103:17: note: template argument deduction/substitution failed:
/usr/include/dlib/optimization/optimization_trust_region.h:459:27: note: mismatched types ?const dlib::matrix_exp<EXP>? and ?const type? {aka ?const double?}
459 | if (!is_finite(rho))
| ~~~~~~~~~^~~~~
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c io/file_formats_msa.c -fPIC -DPIC -o io/.libs/file_formats_msa.o
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o search/BoyerMoore.lo search/BoyerMoore.c
In file included from /usr/include/dlib/matrix/matrix.h:17:
/usr/include/dlib/matrix/matrix_op.h: In instantiation of ?struct dlib::matrix_traits<dlib::matrix_op<dlib::op_join_cols<dlib::matrix<double, 9, 1>, dlib::matrix_op<dlib::op_uniform_matrix_3<double> > > > >?:
/usr/include/dlib/matrix/matrix_exp.h:130:51: required from ?class dlib::matrix_exp<dlib::matrix_op<dlib::op_join_cols<dlib::matrix<double, 9, 1>, dlib::matrix_op<dlib::op_uniform_matrix_3<double> > > > >?
/usr/include/dlib/matrix/matrix_op.h:32:11: required from ?class dlib::matrix_op<dlib::op_join_cols<dlib::matrix<double, 9, 1>, dlib::matrix_op<dlib::op_uniform_matrix_3<double> > > >?
/usr/include/dlib/matrix/matrix_la.h:123:26: required from ?long int dlib::svd4(svd_u_mode, bool, const matrix_exp<EXP>&, matrix<typename EXP::type, uM, uN, MM1, L1>&, matrix<typename EXP::type, qN, qX, MM2, L1>&, matrix<typename EXP::type, vM, vN, MM3, L1>&) [with EXP = matrix<double, 9, 9>; long int qN = 9; long int qX = 1; long int uM = 9; long int uN = 9; long int vM = 9; long int vN = 9; MM1 = memory_manager_stateless_kernel_1<char>; MM2 = memory_manager_stateless_kernel_1<char>; MM3 = memory_manager_stateless_kernel_1<char>; L1 = row_major_layout; typename EXP::type = double]?
/usr/include/dlib/matrix/matrix_la.h:500:24: required from ?long int dlib::svd2(bool, bool, const matrix_exp<EXP>&, matrix<typename EXP::type, uM, uM, MM1, L1>&, matrix<typename EXP::type, qN, qX, MM2, L1>&, matrix<typename EXP::type, vN, vN, MM3, L1>&) [with EXP = matrix<double, 9, 9>; long int qN = 9; long int qX = 1; long int uM = 9; long int vN = 9; MM1 = memory_manager_stateless_kernel_1<char>; MM2 = memory_manager_stateless_kernel_1<char>; MM3 = memory_manager_stateless_kernel_1<char>; L1 = row_major_layout; typename EXP::type = double]?
/usr/include/dlib/geometry/point_transforms.h:520:17: required from here
/usr/include/dlib/matrix/matrix_op.h:21:45: error: no type named ?const_ret_type? in ?struct dlib::op_join_cols<dlib::matrix<double, 9, 1>, dlib::matrix_op<dlib::op_uniform_matrix_3<double> > >?
21 | typedef typename OP::const_ret_type const_ret_type;
| ^~~~~~~~~~~~~~
/usr/include/dlib/matrix/matrix_utilities.h: In instantiation of ?bool dlib::is_finite(const matrix_exp<EXP>&) [with EXP = matrix<double, 9, 1>]?:
/usr/include/dlib/optimization/optimization.h:181:23: required from ?double dlib::find_min(search_strategy_type, stop_strategy_type, const funct&, const funct_der&, T&, double) [with search_strategy_type = bfgs_search_strategy; stop_strategy_type = objective_delta_stop_strategy; funct = impl_proj::obj; funct_der = impl_proj::obj_der; T = matrix<double, 9, 1>]?
/usr/include/dlib/geometry/point_transforms.h:667:17: required from here
/usr/include/dlib/matrix/matrix_utilities.h:111:31: error: no matching function for call to ?is_finite(const double&)?
111 | if (!is_finite(m(r,c)))
| ~~~~~~~~~^~~~~~~~
/usr/include/dlib/matrix/matrix_utilities.h:103:17: note: candidate: ?template<class EXP> bool dlib::is_finite(const matrix_exp<EXP>&)?
103 | inline bool is_finite (
| ^~~~~~~~~
/usr/include/dlib/matrix/matrix_utilities.h:103:17: note: template argument deduction/substitution failed:
/usr/include/dlib/matrix/matrix_utilities.h:111:31: note: mismatched types ?const dlib::matrix_exp<EXP>? and ?const double?
111 | if (!is_finite(m(r,c)))
| ~~~~~~~~~^~~~~~~~
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c search/BoyerMoore.c -fPIC -DPIC -o search/.libs/BoyerMoore.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c io/file_formats.c -fPIC -DPIC -o io/file_formats.o >/dev/null 2>&1
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c search/BoyerMoore.c -fPIC -DPIC -o search/BoyerMoore.o >/dev/null 2>&1
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c io/file_formats_msa.c -fPIC -DPIC -o io/file_formats_msa.o >/dev/null 2>&1
/usr/include/dlib/matrix/matrix_utilities.h: In instantiation of ?const dlib::matrix_op<dlib::op_join_cols<EXP1, EXP2> > dlib::join_cols(const matrix_exp<EXP>&, const matrix_exp<src_exp>&) [with EXP1 = matrix<double, 9, 1>; EXP2 = matrix_op<op_uniform_matrix_3<double> >]?:
/usr/include/dlib/matrix/matrix_la.h:123:26: required from ?long int dlib::svd4(svd_u_mode, bool, const matrix_exp<EXP>&, matrix<typename EXP::type, uM, uN, MM1, L1>&, matrix<typename EXP::type, qN, qX, MM2, L1>&, matrix<typename EXP::type, vM, vN, MM3, L1>&) [with EXP = matrix<double, 9, 9>; long int qN = 9; long int qX = 1; long int uM = 9; long int uN = 9; long int vM = 9; long int vN = 9; MM1 = memory_manager_stateless_kernel_1<char>; MM2 = memory_manager_stateless_kernel_1<char>; MM3 = memory_manager_stateless_kernel_1<char>; L1 = row_major_layout; typename EXP::type = double]?
/usr/include/dlib/matrix/matrix_la.h:500:24: required from ?long int dlib::svd2(bool, bool, const matrix_exp<EXP>&, matrix<typename EXP::type, uM, uM, MM1, L1>&, matrix<typename EXP::type, qN, qX, MM2, L1>&, matrix<typename EXP::type, vN, vN, MM3, L1>&) [with EXP = matrix<double, 9, 9>; long int qN = 9; long int qX = 1; long int uM = 9; long int vN = 9; MM1 = memory_manager_stateless_kernel_1<char>; MM2 = memory_manager_stateless_kernel_1<char>; MM3 = memory_manager_stateless_kernel_1<char>; L1 = row_major_layout; typename EXP::type = double]?
/usr/include/dlib/geometry/point_transforms.h:520:17: required from here
/usr/include/dlib/matrix/matrix_utilities.h:4664:16: error: use of deleted function ?dlib::matrix_op<dlib::op_join_cols<dlib::matrix<double, 9, 1>, dlib::matrix_op<dlib::op_uniform_matrix_3<double> > > >::matrix_op(dlib::matrix_op<dlib::op_join_cols<dlib::matrix<double, 9, 1>, dlib::matrix_op<dlib::op_uniform_matrix_3<double> > > >&&)?
4664 | return matrix_op<op>(op(a.ref(),b.ref()));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/dlib/matrix/matrix_op.h:32:11: note: ?dlib::matrix_op<dlib::op_join_cols<dlib::matrix<double, 9, 1>, dlib::matrix_op<dlib::op_uniform_matrix_3<double> > > >::matrix_op(dlib::matrix_op<dlib::op_join_cols<dlib::matrix<double, 9, 1>, dlib::matrix_op<dlib::op_uniform_matrix_3<double> > > >&&)? is implicitly deleted because the default definition would be ill-formed:
32 | class matrix_op : public matrix_exp<matrix_op<OP> >
| ^~~~~~~~~
/usr/include/dlib/matrix/matrix_op.h:32:11: error: use of deleted function ?dlib::op_join_cols<dlib::matrix<double, 9, 1>, dlib::matrix_op<dlib::op_uniform_matrix_3<double> > >::op_join_cols(const dlib::op_join_cols<dlib::matrix<double, 9, 1>, dlib::matrix_op<dlib::op_uniform_matrix_3<double> > >&)?
/usr/include/dlib/matrix/matrix_utilities.h:4592:12: note: ?dlib::op_join_cols<dlib::matrix<double, 9, 1>, dlib::matrix_op<dlib::op_uniform_matrix_3<double> > >::op_join_cols(const dlib::op_join_cols<dlib::matrix<double, 9, 1>, dlib::matrix_op<dlib::op_uniform_matrix_3<double> > >&)? is implicitly deleted because the default definition would be ill-formed:
4592 | struct op_join_cols
| ^~~~~~~~~~~~
/usr/include/dlib/matrix/matrix_utilities.h:4592:12: error: copying non-static data member ?int&& dlib::op_join_cols<dlib::matrix<double, 9, 1>, dlib::matrix_op<dlib::op_uniform_matrix_3<double> > >::is_reference_type? of rvalue reference type
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o plotting/alignments.lo plotting/alignments.c
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o plotting/layouts.lo plotting/layouts.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c plotting/alignments.c -fPIC -DPIC -o plotting/.libs/alignments.o
/usr/include/dlib/matrix/matrix_op.h: In instantiation of ?struct dlib::matrix_traits<dlib::matrix_op<dlib::op_join_cols<dlib::matrix_op<dlib::op_colm2<dlib::matrix<double, 0, 1> > >, dlib::matrix_op<dlib::op_uniform_matrix_3<double> > > > >?:
/usr/include/dlib/matrix/matrix_exp.h:130:51: required from ?class dlib::matrix_exp<dlib::matrix_op<dlib::op_join_cols<dlib::matrix_op<dlib::op_colm2<dlib::matrix<double, 0, 1> > >, dlib::matrix_op<dlib::op_uniform_matrix_3<double> > > > >?
/usr/include/dlib/matrix/matrix_op.h:32:11: required from ?class dlib::matrix_op<dlib::op_join_cols<dlib::matrix_op<dlib::op_colm2<dlib::matrix<double, 0, 1> > >, dlib::matrix_op<dlib::op_uniform_matrix_3<double> > > >?
/usr/include/dlib/svm/svm_c_linear_dcd_trainer.h:307:52: required from ?void dlib::svm_c_linear_dcd_trainer<K>::optimizer_state::init(const in_sample_vector_type&, const in_scalar_vector_type&, bool, bool, bool, dlib::svm_c_linear_dcd_trainer<K>::scalar_type, dlib::svm_c_linear_dcd_trainer<K>::scalar_type) [with in_sample_vector_type = dlib::matrix_op<dlib::op_std_vect_to_mat<std::vector<std::vector<std::pair<long unsigned int, double> > > > >; in_scalar_vector_type = dlib::matrix_op<dlib::op_std_vect_to_mat<std::vector<double> > >; K = dlib::sparse_linear_kernel<std::vector<std::pair<long unsigned int, double> > >; dlib::svm_c_linear_dcd_trainer<K>::scalar_type = double]?
/usr/include/dlib/svm/svm_c_linear_dcd_trainer.h:519:23: required from ?const dlib::decision_function<K> dlib::svm_c_linear_dcd_trainer<K>::do_train(const in_sample_vector_type&, const in_scalar_vector_type&, optimizer_state&) const [with in_sample_vector_type = dlib::matrix_op<dlib::op_std_vect_to_mat<std::vector<std::vector<std::pair<long unsigned int, double> > > > >; in_scalar_vector_type = dlib::matrix_op<dlib::op_std_vect_to_mat<std::vector<double> > >; K = dlib::sparse_linear_kernel<std::vector<std::pair<long unsigned int, double> > >]?
/usr/include/dlib/svm/svm_c_linear_dcd_trainer.h:483:28: required from ?const dlib::decision_function<K> dlib::svm_c_linear_dcd_trainer<K>::train(const in_sample_vector_type&, const in_scalar_vector_type&, optimizer_state&) const [with in_sample_vector_type = std::vector<std::vector<std::pair<long unsigned int, double> > >; in_scalar_vector_type = std::vector<double>; K = dlib::sparse_linear_kernel<std::vector<std::pair<long unsigned int, double> > >]?
/usr/include/dlib/global_optimization/upper_bound_function.h:221:36: required from here
/usr/include/dlib/matrix/matrix_op.h:21:45: error: no type named ?const_ret_type? in ?struct dlib::op_join_cols<dlib::matrix_op<dlib::op_colm2<dlib::matrix<double, 0, 1> > >, dlib::matrix_op<dlib::op_uniform_matrix_3<double> > >?
21 | typedef typename OP::const_ret_type const_ret_type;
| ^~~~~~~~~~~~~~
/usr/include/dlib/matrix/matrix_op.h: In instantiation of ?struct dlib::matrix_traits<dlib::matrix_op<dlib::op_join_cols<dlib::matrix_op<dlib::op_join_cols<dlib::matrix_op<dlib::op_colm2<dlib::matrix<double, 0, 1> > >, dlib::matrix_op<dlib::op_uniform_matrix_3<double> > > >, dlib::matrix_op<dlib::op_uniform_matrix_3<double> > > > >?:
/usr/include/dlib/matrix/matrix_exp.h:130:51: required from ?class dlib::matrix_exp<dlib::matrix_op<dlib::op_join_cols<dlib::matrix_op<dlib::op_join_cols<dlib::matrix_op<dlib::op_colm2<dlib::matrix<double, 0, 1> > >, dlib::matrix_op<dlib::op_uniform_matrix_3<double> > > >, dlib::matrix_op<dlib::op_uniform_matrix_3<double> > > > >?
/usr/include/dlib/matrix/matrix_op.h:32:11: required from ?class dlib::matrix_op<dlib::op_join_cols<dlib::matrix_op<dlib::op_join_cols<dlib::matrix_op<dlib::op_colm2<dlib::matrix<double, 0, 1> > >, dlib::matrix_op<dlib::op_uniform_matrix_3<double> > > >, dlib::matrix_op<dlib::op_uniform_matrix_3<double> > > >?
/usr/include/dlib/svm/svm_c_linear_dcd_trainer.h:307:42: required from ?void dlib::svm_c_linear_dcd_trainer<K>::optimizer_state::init(const in_sample_vector_type&, const in_scalar_vector_type&, bool, bool, bool, dlib::svm_c_linear_dcd_trainer<K>::scalar_type, dlib::svm_c_linear_dcd_trainer<K>::scalar_type) [with in_sample_vector_type = dlib::matrix_op<dlib::op_std_vect_to_mat<std::vector<std::vector<std::pair<long unsigned int, double> > > > >; in_scalar_vector_type = dlib::matrix_op<dlib::op_std_vect_to_mat<std::vector<double> > >; K = dlib::sparse_linear_kernel<std::vector<std::pair<long unsigned int, double> > >; dlib::svm_c_linear_dcd_trainer<K>::scalar_type = double]?
/usr/include/dlib/svm/svm_c_linear_dcd_trainer.h:519:23: required from ?const dlib::decision_function<K> dlib::svm_c_linear_dcd_trainer<K>::do_train(const in_sample_vector_type&, const in_scalar_vector_type&, optimizer_state&) const [with in_sample_vector_type = dlib::matrix_op<dlib::op_std_vect_to_mat<std::vector<std::vector<std::pair<long unsigned int, double> > > > >; in_scalar_vector_type = dlib::matrix_op<dlib::op_std_vect_to_mat<std::vector<double> > >; K = dlib::sparse_linear_kernel<std::vector<std::pair<long unsigned int, double> > >]?
/usr/include/dlib/svm/svm_c_linear_dcd_trainer.h:483:28: required from ?const dlib::decision_function<K> dlib::svm_c_linear_dcd_trainer<K>::train(const in_sample_vector_type&, const in_scalar_vector_type&, optimizer_state&) const [with in_sample_vector_type = std::vector<std::vector<std::pair<long unsigned int, double> > >; in_scalar_vector_type = std::vector<double>; K = dlib::sparse_linear_kernel<std::vector<std::pair<long unsigned int, double> > >]?
/usr/include/dlib/global_optimization/upper_bound_function.h:221:36: required from here
/usr/include/dlib/matrix/matrix_op.h:21:45: error: no type named ?const_ret_type? in ?struct dlib::op_join_cols<dlib::matrix_op<dlib::op_join_cols<dlib::matrix_op<dlib::op_colm2<dlib::matrix<double, 0, 1> > >, dlib::matrix_op<dlib::op_uniform_matrix_3<double> > > >, dlib::matrix_op<dlib::op_uniform_matrix_3<double> > >?
/usr/include/dlib/matrix/matrix_op.h: In instantiation of ?struct dlib::matrix_traits<dlib::matrix_op<dlib::op_join_cols<dlib::matrix<double, 0, 1>, dlib::matrix_op<dlib::op_uniform_matrix_3<double> > > > >?:
/usr/include/dlib/matrix/matrix_exp.h:130:51: required from ?class dlib::matrix_exp<dlib::matrix_op<dlib::op_join_cols<dlib::matrix<double, 0, 1>, dlib::matrix_op<dlib::op_uniform_matrix_3<double> > > > >?
/usr/include/dlib/matrix/matrix_op.h:32:11: required from ?class dlib::matrix_op<dlib::op_join_cols<dlib::matrix<double, 0, 1>, dlib::matrix_op<dlib::op_uniform_matrix_3<double> > > >?
/usr/include/dlib/svm/svm_c_linear_dcd_trainer.h:316:42: required from ?void dlib::svm_c_linear_dcd_trainer<K>::optimizer_state::init(const in_sample_vector_type&, const in_scalar_vector_type&, bool, bool, bool, dlib::svm_c_linear_dcd_trainer<K>::scalar_type, dlib::svm_c_linear_dcd_trainer<K>::scalar_type) [with in_sample_vector_type = dlib::matrix_op<dlib::op_std_vect_to_mat<std::vector<std::vector<std::pair<long unsigned int, double> > > > >; in_scalar_vector_type = dlib::matrix_op<dlib::op_std_vect_to_mat<std::vector<double> > >; K = dlib::sparse_linear_kernel<std::vector<std::pair<long unsigned int, double> > >; dlib::svm_c_linear_dcd_trainer<K>::scalar_type = double]?
/usr/include/dlib/svm/svm_c_linear_dcd_trainer.h:519:23: required from ?const dlib::decision_function<K> dlib::svm_c_linear_dcd_trainer<K>::do_train(const in_sample_vector_type&, const in_scalar_vector_type&, optimizer_state&) const [with in_sample_vector_type = dlib::matrix_op<dlib::op_std_vect_to_mat<std::vector<std::vector<std::pair<long unsigned int, double> > > > >; in_scalar_vector_type = dlib::matrix_op<dlib::op_std_vect_to_mat<std::vector<double> > >; K = dlib::sparse_linear_kernel<std::vector<std::pair<long unsigned int, double> > >]?
/usr/include/dlib/svm/svm_c_linear_dcd_trainer.h:483:28: required from ?const dlib::decision_function<K> dlib::svm_c_linear_dcd_trainer<K>::train(const in_sample_vector_type&, const in_scalar_vector_type&, optimizer_state&) const [with in_sample_vector_type = std::vector<std::vector<std::pair<long unsigned int, double> > >; in_scalar_vector_type = std::vector<double>; K = dlib::sparse_linear_kernel<std::vector<std::pair<long unsigned int, double> > >]?
/usr/include/dlib/global_optimization/upper_bound_function.h:221:36: required from here
/usr/include/dlib/matrix/matrix_op.h:21:45: error: no type named ?const_ret_type? in ?struct dlib::op_join_cols<dlib::matrix<double, 0, 1>, dlib::matrix_op<dlib::op_uniform_matrix_3<double> > >?
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c plotting/layouts.c -fPIC -DPIC -o plotting/.libs/layouts.o
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o plotting/probabilities.lo plotting/probabilities.c
/usr/include/dlib/matrix/matrix_utilities.h: In instantiation of ?dlib::op_join_cols<M1, M2>::op_join_cols(const M1&, const M2&) [with M1 = dlib::matrix<double, 9, 1>; M2 = dlib::matrix_op<dlib::op_uniform_matrix_3<double> >]?:
/usr/include/dlib/matrix/matrix_utilities.h:4664:30: required from ?const dlib::matrix_op<dlib::op_join_cols<EXP1, EXP2> > dlib::join_cols(const matrix_exp<EXP>&, const matrix_exp<src_exp>&) [with EXP1 = matrix<double, 9, 1>; EXP2 = matrix_op<op_uniform_matrix_3<double> >]?
/usr/include/dlib/matrix/matrix_la.h:123:26: required from ?long int dlib::svd4(svd_u_mode, bool, const matrix_exp<EXP>&, matrix<typename EXP::type, uM, uN, MM1, L1>&, matrix<typename EXP::type, qN, qX, MM2, L1>&, matrix<typename EXP::type, vM, vN, MM3, L1>&) [with EXP = matrix<double, 9, 9>; long int qN = 9; long int qX = 1; long int uM = 9; long int uN = 9; long int vM = 9; long int vN = 9; MM1 = memory_manager_stateless_kernel_1<char>; MM2 = memory_manager_stateless_kernel_1<char>; MM3 = memory_manager_stateless_kernel_1<char>; L1 = row_major_layout; typename EXP::type = double]?
/usr/include/dlib/matrix/matrix_la.h:500:24: required from ?long int dlib::svd2(bool, bool, const matrix_exp<EXP>&, matrix<typename EXP::type, uM, uM, MM1, L1>&, matrix<typename EXP::type, qN, qX, MM2, L1>&, matrix<typename EXP::type, vN, vN, MM3, L1>&) [with EXP = matrix<double, 9, 9>; long int qN = 9; long int qX = 1; long int uM = 9; long int vN = 9; MM1 = memory_manager_stateless_kernel_1<char>; MM2 = memory_manager_stateless_kernel_1<char>; MM3 = memory_manager_stateless_kernel_1<char>; L1 = row_major_layout; typename EXP::type = double]?
/usr/include/dlib/geometry/point_transforms.h:520:17: required from here
/usr/include/dlib/matrix/matrix_utilities.h:4594:9: error: uninitialized reference member in ?int&&? [-fpermissive]
4594 | op_join_cols(const M1& m1_, const M2& m2_) : m1(m1_),m2(m2_),_nc(std::max(m1.nc(),m2.nc())) {}
| ^~~~~~~~~~~~
/usr/include/dlib/matrix/matrix_utilities.h:4611:80: note: ?int&& dlib::op_join_cols<dlib::matrix<double, 9, 1>, dlib::matrix_op<dlib::op_uniform_matrix_3<double> > >::is_reference_type? should be initialized
4611 | typedef typename type_selector<T1, T2, is_reference_type<T1>::value && is_reference_type<T3>::value>::type const_ret_type;
| ^~~~~~~~~~~~~~~~~
/usr/include/dlib/matrix/matrix_op.h: In instantiation of ?struct dlib::matrix_traits<dlib::matrix_op<dlib::op_join_cols<dlib::matrix<double, 3, 1, dlib::memory_manager_stateless_kernel_1<char>, dlib::row_major_layout>, dlib::matrix_op<dlib::op_uniform_matrix_3<double> > > > >?:
/usr/include/dlib/matrix/matrix_exp.h:130:51: required from ?class dlib::matrix_exp<dlib::matrix_op<dlib::op_join_cols<dlib::matrix<double, 3, 1, dlib::memory_manager_stateless_kernel_1<char>, dlib::row_major_layout>, dlib::matrix_op<dlib::op_uniform_matrix_3<double> > > > >?
/usr/include/dlib/matrix/matrix_op.h:32:11: required from ?class dlib::matrix_op<dlib::op_join_cols<dlib::matrix<double, 3, 1, dlib::memory_manager_stateless_kernel_1<char>, dlib::row_major_layout>, dlib::matrix_op<dlib::op_uniform_matrix_3<double> > > >?
/usr/include/dlib/matrix/matrix_la.h:1382:30: required from ?void dlib::svd3(const matrix_exp<EXP>&, matrix<typename matrix_exp<EXP>::type, uNR, uNC, MM1, L1>&, matrix<typename matrix_exp<EXP>::type, wN, wX, MM2, L1>&, matrix<typename matrix_exp<EXP>::type, vN, vN, MM3, L1>&) [with EXP = matrix_op<op_trans<matrix<double, 3, 0> > >; long int uNR = 0; long int uNC = 3; long int wN = 3; long int vN = 3; long int wX = 1; MM1 = memory_manager_stateless_kernel_1<char>; MM2 = memory_manager_stateless_kernel_1<char>; MM3 = memory_manager_stateless_kernel_1<char>; L1 = row_major_layout; typename matrix_exp<EXP>::type = double]?
/usr/include/dlib/matrix/matrix_la.h:1430:13: required from ?const dlib::matrix<typename EXP::type, EXP::NC, EXP::NR, typename EXP::mem_manager_type> dlib::pinv_helper(const matrix_exp<EXP>&, double) [with EXP = matrix_op<op_trans<matrix<double, 3, 0> > >; typename EXP::type = double; typename EXP::mem_manager_type = memory_manager_stateless_kernel_1<char>]?
/usr/include/dlib/matrix/matrix_la.h:1457:37: required from ?const dlib::matrix<typename EXP::type, EXP::NC, EXP::NR, typename EXP::mem_manager_type> dlib::pinv(const matrix_exp<EXP>&, double) [with EXP = matrix<double, 3, 0>; typename EXP::type = double; typename EXP::mem_manager_type = memory_manager_stateless_kernel_1<char>]?
/usr/include/dlib/geometry/point_transforms.h:316:44: required from ?dlib::point_transform_affine dlib::find_affine_transform(const std::vector<vector<T, 2> >&, const std::vector<vector<T, 2> >&) [with T = double]?
/usr/include/dlib/geometry/point_transforms.h:645:61: required from here
/usr/include/dlib/matrix/matrix_op.h:21:45: error: no type named ?const_ret_type? in ?struct dlib::op_join_cols<dlib::matrix<double, 3, 1, dlib::memory_manager_stateless_kernel_1<char>, dlib::row_major_layout>, dlib::matrix_op<dlib::op_uniform_matrix_3<double> > >?
21 | typedef typename OP::const_ret_type const_ret_type;
| ^~~~~~~~~~~~~~
/usr/include/dlib/matrix/matrix_op.h: In instantiation of ?struct dlib::matrix_traits<dlib::matrix_op<dlib::op_join_rows<dlib::matrix<double, 0, 3, dlib::memory_manager_stateless_kernel_1<char>, dlib::row_major_layout>, dlib::matrix_op<dlib::op_uniform_matrix_3<double> > > > >?:
/usr/include/dlib/matrix/matrix_exp.h:130:51: required from ?class dlib::matrix_exp<dlib::matrix_op<dlib::op_join_rows<dlib::matrix<double, 0, 3, dlib::memory_manager_stateless_kernel_1<char>, dlib::row_major_layout>, dlib::matrix_op<dlib::op_uniform_matrix_3<double> > > > >?
/usr/include/dlib/matrix/matrix_op.h:32:11: required from ?class dlib::matrix_op<dlib::op_join_rows<dlib::matrix<double, 0, 3, dlib::memory_manager_stateless_kernel_1<char>, dlib::row_major_layout>, dlib::matrix_op<dlib::op_uniform_matrix_3<double> > > >?
/usr/include/dlib/matrix/matrix_la.h:1383:30: required from ?void dlib::svd3(const matrix_exp<EXP>&, matrix<typename matrix_exp<EXP>::type, uNR, uNC, MM1, L1>&, matrix<typename matrix_exp<EXP>::type, wN, wX, MM2, L1>&, matrix<typename matrix_exp<EXP>::type, vN, vN, MM3, L1>&) [with EXP = matrix_op<op_trans<matrix<double, 3, 0> > >; long int uNR = 0; long int uNC = 3; long int wN = 3; long int vN = 3; long int wX = 1; MM1 = memory_manager_stateless_kernel_1<char>; MM2 = memory_manager_stateless_kernel_1<char>; MM3 = memory_manager_stateless_kernel_1<char>; L1 = row_major_layout; typename matrix_exp<EXP>::type = double]?
/usr/include/dlib/matrix/matrix_la.h:1430:13: required from ?const dlib::matrix<typename EXP::type, EXP::NC, EXP::NR, typename EXP::mem_manager_type> dlib::pinv_helper(const matrix_exp<EXP>&, double) [with EXP = matrix_op<op_trans<matrix<double, 3, 0> > >; typename EXP::type = double; typename EXP::mem_manager_type = memory_manager_stateless_kernel_1<char>]?
/usr/include/dlib/matrix/matrix_la.h:1457:37: required from ?const dlib::matrix<typename EXP::type, EXP::NC, EXP::NR, typename EXP::mem_manager_type> dlib::pinv(const matrix_exp<EXP>&, double) [with EXP = matrix<double, 3, 0>; typename EXP::type = double; typename EXP::mem_manager_type = memory_manager_stateless_kernel_1<char>]?
/usr/include/dlib/geometry/point_transforms.h:316:44: required from ?dlib::point_transform_affine dlib::find_affine_transform(const std::vector<vector<T, 2> >&, const std::vector<vector<T, 2> >&) [with T = double]?
/usr/include/dlib/geometry/point_transforms.h:645:61: required from here
/usr/include/dlib/matrix/matrix_op.h:21:45: error: no type named ?const_ret_type? in ?struct dlib::op_join_rows<dlib::matrix<double, 0, 3, dlib::memory_manager_stateless_kernel_1<char>, dlib::row_major_layout>, dlib::matrix_op<dlib::op_uniform_matrix_3<double> > >?
/usr/include/dlib/matrix/matrix_op.h: In instantiation of ?struct dlib::matrix_traits<dlib::matrix_op<dlib::op_join_rows<dlib::matrix<double, 3, 0>, dlib::matrix_op<dlib::op_uniform_matrix_3<double> > > > >?:
/usr/include/dlib/matrix/matrix_exp.h:130:51: required from ?class dlib::matrix_exp<dlib::matrix_op<dlib::op_join_rows<dlib::matrix<double, 3, 0>, dlib::matrix_op<dlib::op_uniform_matrix_3<double> > > > >?
/usr/include/dlib/matrix/matrix_op.h:32:11: required from ?class dlib::matrix_op<dlib::op_join_rows<dlib::matrix<double, 3, 0>, dlib::matrix_op<dlib::op_uniform_matrix_3<double> > > >?
/usr/include/dlib/matrix/matrix_la.h:1383:30: required from ?void dlib::svd3(const matrix_exp<EXP>&, matrix<typename matrix_exp<EXP>::type, uNR, uNC, MM1, L1>&, matrix<typename matrix_exp<EXP>::type, wN, wX, MM2, L1>&, matrix<typename matrix_exp<EXP>::type, vN, vN, MM3, L1>&) [with EXP = matrix<double, 3, 0>; long int uNR = 3; long int uNC = 0; long int wN = 0; long int vN = 0; long int wX = 1; MM1 = memory_manager_stateless_kernel_1<char>; MM2 = memory_manager_stateless_kernel_1<char>; MM3 = memory_manager_stateless_kernel_1<char>; L1 = row_major_layout; typename matrix_exp<EXP>::type = double]?
/usr/include/dlib/matrix/matrix_la.h:1430:13: required from ?const dlib::matrix<typename EXP::type, EXP::NC, EXP::NR, typename EXP::mem_manager_type> dlib::pinv_helper(const matrix_exp<EXP>&, double) [with EXP = matrix<double, 3, 0>; typename EXP::type = double; typename EXP::mem_manager_type = memory_manager_stateless_kernel_1<char>]?
/usr/include/dlib/matrix/matrix_la.h:1459:31: required from ?const dlib::matrix<typename EXP::type, EXP::NC, EXP::NR, typename EXP::mem_manager_type> dlib::pinv(const matrix_exp<EXP>&, double) [with EXP = matrix<double, 3, 0>; typename EXP::type = double; typename EXP::mem_manager_type = memory_manager_stateless_kernel_1<char>]?
/usr/include/dlib/geometry/point_transforms.h:316:44: required from ?dlib::point_transform_affine dlib::find_affine_transform(const std::vector<vector<T, 2> >&, const std::vector<vector<T, 2> >&) [with T = double]?
/usr/include/dlib/geometry/point_transforms.h:645:61: required from here
/usr/include/dlib/matrix/matrix_op.h:21:45: error: no type named ?const_ret_type? in ?struct dlib::op_join_rows<dlib::matrix<double, 3, 0>, dlib::matrix_op<dlib::op_uniform_matrix_3<double> > >?
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c plotting/probabilities.c -fPIC -DPIC -o plotting/.libs/probabilities.o
/usr/include/dlib/matrix/matrix_utilities.h: In instantiation of ?const dlib::matrix_op<dlib::op_join_cols<EXP1, EXP2> > dlib::join_cols(const matrix_exp<EXP>&, const matrix_exp<src_exp>&) [with EXP1 = matrix_op<op_colm2<matrix<double, 0, 1> > >; EXP2 = matrix_op<op_uniform_matrix_3<double> >]?:
/usr/include/dlib/svm/svm_c_linear_dcd_trainer.h:307:52: required from ?void dlib::svm_c_linear_dcd_trainer<K>::optimizer_state::init(const in_sample_vector_type&, const in_scalar_vector_type&, bool, bool, bool, dlib::svm_c_linear_dcd_trainer<K>::scalar_type, dlib::svm_c_linear_dcd_trainer<K>::scalar_type) [with in_sample_vector_type = dlib::matrix_op<dlib::op_std_vect_to_mat<std::vector<std::vector<std::pair<long unsigned int, double> > > > >; in_scalar_vector_type = dlib::matrix_op<dlib::op_std_vect_to_mat<std::vector<double> > >; K = dlib::sparse_linear_kernel<std::vector<std::pair<long unsigned int, double> > >; dlib::svm_c_linear_dcd_trainer<K>::scalar_type = double]?
/usr/include/dlib/svm/svm_c_linear_dcd_trainer.h:519:23: required from ?const dlib::decision_function<K> dlib::svm_c_linear_dcd_trainer<K>::do_train(const in_sample_vector_type&, const in_scalar_vector_type&, optimizer_state&) const [with in_sample_vector_type = dlib::matrix_op<dlib::op_std_vect_to_mat<std::vector<std::vector<std::pair<long unsigned int, double> > > > >; in_scalar_vector_type = dlib::matrix_op<dlib::op_std_vect_to_mat<std::vector<double> > >; K = dlib::sparse_linear_kernel<std::vector<std::pair<long unsigned int, double> > >]?
/usr/include/dlib/svm/svm_c_linear_dcd_trainer.h:483:28: required from ?const dlib::decision_function<K> dlib::svm_c_linear_dcd_trainer<K>::train(const in_sample_vector_type&, const in_scalar_vector_type&, optimizer_state&) const [with in_sample_vector_type = std::vector<std::vector<std::pair<long unsigned int, double> > >; in_scalar_vector_type = std::vector<double>; K = dlib::sparse_linear_kernel<std::vector<std::pair<long unsigned int, double> > >]?
/usr/include/dlib/global_optimization/upper_bound_function.h:221:36: required from here
/usr/include/dlib/matrix/matrix_utilities.h:4664:16: error: use of deleted function ?dlib::matrix_op<dlib::op_join_cols<dlib::matrix_op<dlib::op_colm2<dlib::matrix<double, 0, 1> > >, dlib::matrix_op<dlib::op_uniform_matrix_3<double> > > >::matrix_op(dlib::matrix_op<dlib::op_join_cols<dlib::matrix_op<dlib::op_colm2<dlib::matrix<double, 0, 1> > >, dlib::matrix_op<dlib::op_uniform_matrix_3<double> > > >&&)?
4664 | return matrix_op<op>(op(a.ref(),b.ref()));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/dlib/matrix/matrix_op.h:32:11: note: ?dlib::matrix_op<dlib::op_join_cols<dlib::matrix_op<dlib::op_colm2<dlib::matrix<double, 0, 1> > >, dlib::matrix_op<dlib::op_uniform_matrix_3<double> > > >::matrix_op(dlib::matrix_op<dlib::op_join_cols<dlib::matrix_op<dlib::op_colm2<dlib::matrix<double, 0, 1> > >, dlib::matrix_op<dlib::op_uniform_matrix_3<double> > > >&&)? is implicitly deleted because the default definition would be ill-formed:
32 | class matrix_op : public matrix_exp<matrix_op<OP> >
| ^~~~~~~~~
/usr/include/dlib/matrix/matrix_op.h:32:11: error: use of deleted function ?dlib::op_join_cols<dlib::matrix_op<dlib::op_colm2<dlib::matrix<double, 0, 1> > >, dlib::matrix_op<dlib::op_uniform_matrix_3<double> > >::op_join_cols(const dlib::op_join_cols<dlib::matrix_op<dlib::op_colm2<dlib::matrix<double, 0, 1> > >, dlib::matrix_op<dlib::op_uniform_matrix_3<double> > >&)?
/usr/include/dlib/matrix/matrix_utilities.h:4592:12: note: ?dlib::op_join_cols<dlib::matrix_op<dlib::op_colm2<dlib::matrix<double, 0, 1> > >, dlib::matrix_op<dlib::op_uniform_matrix_3<double> > >::op_join_cols(const dlib::op_join_cols<dlib::matrix_op<dlib::op_colm2<dlib::matrix<double, 0, 1> > >, dlib::matrix_op<dlib::op_uniform_matrix_3<double> > >&)? is implicitly deleted because the default definition would be ill-formed:
4592 | struct op_join_cols
| ^~~~~~~~~~~~
/usr/include/dlib/matrix/matrix_utilities.h:4592:12: error: copying non-static data member ?int&& dlib::op_join_cols<dlib::matrix_op<dlib::op_colm2<dlib::matrix<double, 0, 1> > >, dlib::matrix_op<dlib::op_uniform_matrix_3<double> > >::is_reference_type? of rvalue reference type
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c plotting/alignments.c -fPIC -DPIC -o plotting/alignments.o >/dev/null 2>&1
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c plotting/layouts.c -fPIC -DPIC -o plotting/layouts.o >/dev/null 2>&1
/usr/include/dlib/matrix/matrix_utilities.h: In instantiation of ?const dlib::matrix_op<dlib::op_join_cols<EXP1, EXP2> > dlib::join_cols(const matrix_exp<EXP>&, const matrix_exp<src_exp>&) [with EXP1 = matrix<double, 3, 1, memory_manager_stateless_kernel_1<char>, row_major_layout>; EXP2 = matrix_op<op_uniform_matrix_3<double> >]?:
/usr/include/dlib/matrix/matrix_la.h:1382:30: required from ?void dlib::svd3(const matrix_exp<EXP>&, matrix<typename matrix_exp<EXP>::type, uNR, uNC, MM1, L1>&, matrix<typename matrix_exp<EXP>::type, wN, wX, MM2, L1>&, matrix<typename matrix_exp<EXP>::type, vN, vN, MM3, L1>&) [with EXP = matrix_op<op_trans<matrix<double, 3, 0> > >; long int uNR = 0; long int uNC = 3; long int wN = 3; long int vN = 3; long int wX = 1; MM1 = memory_manager_stateless_kernel_1<char>; MM2 = memory_manager_stateless_kernel_1<char>; MM3 = memory_manager_stateless_kernel_1<char>; L1 = row_major_layout; typename matrix_exp<EXP>::type = double]?
/usr/include/dlib/matrix/matrix_la.h:1430:13: required from ?const dlib::matrix<typename EXP::type, EXP::NC, EXP::NR, typename EXP::mem_manager_type> dlib::pinv_helper(const matrix_exp<EXP>&, double) [with EXP = matrix_op<op_trans<matrix<double, 3, 0> > >; typename EXP::type = double; typename EXP::mem_manager_type = memory_manager_stateless_kernel_1<char>]?
/usr/include/dlib/matrix/matrix_la.h:1457:37: required from ?const dlib::matrix<typename EXP::type, EXP::NC, EXP::NR, typename EXP::mem_manager_type> dlib::pinv(const matrix_exp<EXP>&, double) [with EXP = matrix<double, 3, 0>; typename EXP::type = double; typename EXP::mem_manager_type = memory_manager_stateless_kernel_1<char>]?
/usr/include/dlib/geometry/point_transforms.h:316:44: required from ?dlib::point_transform_affine dlib::find_affine_transform(const std::vector<vector<T, 2> >&, const std::vector<vector<T, 2> >&) [with T = double]?
/usr/include/dlib/geometry/point_transforms.h:645:61: required from here
/usr/include/dlib/matrix/matrix_utilities.h:4664:16: error: use of deleted function ?dlib::matrix_op<dlib::op_join_cols<dlib::matrix<double, 3, 1, dlib::memory_manager_stateless_kernel_1<char>, dlib::row_major_layout>, dlib::matrix_op<dlib::op_uniform_matrix_3<double> > > >::matrix_op(dlib::matrix_op<dlib::op_join_cols<dlib::matrix<double, 3, 1, dlib::memory_manager_stateless_kernel_1<char>, dlib::row_major_layout>, dlib::matrix_op<dlib::op_uniform_matrix_3<double> > > >&&)?
4664 | return matrix_op<op>(op(a.ref(),b.ref()));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/dlib/matrix/matrix_op.h:32:11: note: ?dlib::matrix_op<dlib::op_join_cols<dlib::matrix<double, 3, 1, dlib::memory_manager_stateless_kernel_1<char>, dlib::row_major_layout>, dlib::matrix_op<dlib::op_uniform_matrix_3<double> > > >::matrix_op(dlib::matrix_op<dlib::op_join_cols<dlib::matrix<double, 3, 1, dlib::memory_manager_stateless_kernel_1<char>, dlib::row_major_layout>, dlib::matrix_op<dlib::op_uniform_matrix_3<double> > > >&&)? is implicitly deleted because the default definition would be ill-formed:
32 | class matrix_op : public matrix_exp<matrix_op<OP> >
| ^~~~~~~~~
/usr/include/dlib/matrix/matrix_op.h:32:11: error: use of deleted function ?dlib::op_join_cols<dlib::matrix<double, 3, 1, dlib::memory_manager_stateless_kernel_1<char>, dlib::row_major_layout>, dlib::matrix_op<dlib::op_uniform_matrix_3<double> > >::op_join_cols(const dlib::op_join_cols<dlib::matrix<double, 3, 1, dlib::memory_manager_stateless_kernel_1<char>, dlib::row_major_layout>, dlib::matrix_op<dlib::op_uniform_matrix_3<double> > >&)?
/usr/include/dlib/matrix/matrix_utilities.h:4592:12: note: ?dlib::op_join_cols<dlib::matrix<double, 3, 1, dlib::memory_manager_stateless_kernel_1<char>, dlib::row_major_layout>, dlib::matrix_op<dlib::op_uniform_matrix_3<double> > >::op_join_cols(const dlib::op_join_cols<dlib::matrix<double, 3, 1, dlib::memory_manager_stateless_kernel_1<char>, dlib::row_major_layout>, dlib::matrix_op<dlib::op_uniform_matrix_3<double> > >&)? is implicitly deleted because the default definition would be ill-formed:
4592 | struct op_join_cols
| ^~~~~~~~~~~~
/usr/include/dlib/matrix/matrix_utilities.h:4592:12: error: copying non-static data member ?int&& dlib::op_join_cols<dlib::matrix<double, 3, 1, dlib::memory_manager_stateless_kernel_1<char>, dlib::row_major_layout>, dlib::matrix_op<dlib::op_uniform_matrix_3<double> > >::is_reference_type? of rvalue reference type
/usr/include/dlib/matrix/matrix_utilities.h: In instantiation of ?const dlib::matrix_op<dlib::op_join_rows<EXP1, EXP2> > dlib::join_rows(const matrix_exp<EXP>&, const matrix_exp<src_exp>&) [with EXP1 = matrix<double, 3, 0>; EXP2 = matrix_op<op_uniform_matrix_3<double> >]?:
/usr/include/dlib/matrix/matrix_la.h:1383:30: required from ?void dlib::svd3(const matrix_exp<EXP>&, matrix<typename matrix_exp<EXP>::type, uNR, uNC, MM1, L1>&, matrix<typename matrix_exp<EXP>::type, wN, wX, MM2, L1>&, matrix<typename matrix_exp<EXP>::type, vN, vN, MM3, L1>&) [with EXP = matrix<double, 3, 0>; long int uNR = 3; long int uNC = 0; long int wN = 0; long int vN = 0; long int wX = 1; MM1 = memory_manager_stateless_kernel_1<char>; MM2 = memory_manager_stateless_kernel_1<char>; MM3 = memory_manager_stateless_kernel_1<char>; L1 = row_major_layout; typename matrix_exp<EXP>::type = double]?
/usr/include/dlib/matrix/matrix_la.h:1430:13: required from ?const dlib::matrix<typename EXP::type, EXP::NC, EXP::NR, typename EXP::mem_manager_type> dlib::pinv_helper(const matrix_exp<EXP>&, double) [with EXP = matrix<double, 3, 0>; typename EXP::type = double; typename EXP::mem_manager_type = memory_manager_stateless_kernel_1<char>]?
/usr/include/dlib/matrix/matrix_la.h:1459:31: required from ?const dlib::matrix<typename EXP::type, EXP::NC, EXP::NR, typename EXP::mem_manager_type> dlib::pinv(const matrix_exp<EXP>&, double) [with EXP = matrix<double, 3, 0>; typename EXP::type = double; typename EXP::mem_manager_type = memory_manager_stateless_kernel_1<char>]?
/usr/include/dlib/geometry/point_transforms.h:316:44: required from ?dlib::point_transform_affine dlib::find_affine_transform(const std::vector<vector<T, 2> >&, const std::vector<vector<T, 2> >&) [with T = double]?
/usr/include/dlib/geometry/point_transforms.h:645:61: required from here
/usr/include/dlib/matrix/matrix_utilities.h:4586:16: error: use of deleted function ?dlib::matrix_op<dlib::op_join_rows<dlib::matrix<double, 3, 0>, dlib::matrix_op<dlib::op_uniform_matrix_3<double> > > >::matrix_op(dlib::matrix_op<dlib::op_join_rows<dlib::matrix<double, 3, 0>, dlib::matrix_op<dlib::op_uniform_matrix_3<double> > > >&&)?
4586 | return matrix_op<op>(op(a.ref(),b.ref()));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/dlib/matrix/matrix_op.h:32:11: note: ?dlib::matrix_op<dlib::op_join_rows<dlib::matrix<double, 3, 0>, dlib::matrix_op<dlib::op_uniform_matrix_3<double> > > >::matrix_op(dlib::matrix_op<dlib::op_join_rows<dlib::matrix<double, 3, 0>, dlib::matrix_op<dlib::op_uniform_matrix_3<double> > > >&&)? is implicitly deleted because the default definition would be ill-formed:
32 | class matrix_op : public matrix_exp<matrix_op<OP> >
| ^~~~~~~~~
/usr/include/dlib/matrix/matrix_op.h:32:11: error: use of deleted function ?dlib::op_join_rows<dlib::matrix<double, 3, 0>, dlib::matrix_op<dlib::op_uniform_matrix_3<double> > >::op_join_rows(const dlib::op_join_rows<dlib::matrix<double, 3, 0>, dlib::matrix_op<dlib::op_uniform_matrix_3<double> > >&)?
/usr/include/dlib/matrix/matrix_utilities.h:4517:12: note: ?dlib::op_join_rows<dlib::matrix<double, 3, 0>, dlib::matrix_op<dlib::op_uniform_matrix_3<double> > >::op_join_rows(const dlib::op_join_rows<dlib::matrix<double, 3, 0>, dlib::matrix_op<dlib::op_uniform_matrix_3<double> > >&)? is implicitly deleted because the default definition would be ill-formed:
4517 | struct op_join_rows
| ^~~~~~~~~~~~
/usr/include/dlib/matrix/matrix_utilities.h:4517:12: error: copying non-static data member ?int&& dlib::op_join_rows<dlib::matrix<double, 3, 0>, dlib::matrix_op<dlib::op_uniform_matrix_3<double> > >::is_reference_type? of rvalue reference type
/usr/include/dlib/matrix/matrix_utilities.h: In instantiation of ?dlib::op_join_cols<M1, M2>::op_join_cols(const M1&, const M2&) [with M1 = dlib::matrix_op<dlib::op_colm2<dlib::matrix<double, 0, 1> > >; M2 = dlib::matrix_op<dlib::op_uniform_matrix_3<double> >]?:
/usr/include/dlib/matrix/matrix_utilities.h:4664:30: required from ?const dlib::matrix_op<dlib::op_join_cols<EXP1, EXP2> > dlib::join_cols(const matrix_exp<EXP>&, const matrix_exp<src_exp>&) [with EXP1 = matrix_op<op_colm2<matrix<double, 0, 1> > >; EXP2 = matrix_op<op_uniform_matrix_3<double> >]?
/usr/include/dlib/svm/svm_c_linear_dcd_trainer.h:307:52: required from ?void dlib::svm_c_linear_dcd_trainer<K>::optimizer_state::init(const in_sample_vector_type&, const in_scalar_vector_type&, bool, bool, bool, dlib::svm_c_linear_dcd_trainer<K>::scalar_type, dlib::svm_c_linear_dcd_trainer<K>::scalar_type) [with in_sample_vector_type = dlib::matrix_op<dlib::op_std_vect_to_mat<std::vector<std::vector<std::pair<long unsigned int, double> > > > >; in_scalar_vector_type = dlib::matrix_op<dlib::op_std_vect_to_mat<std::vector<double> > >; K = dlib::sparse_linear_kernel<std::vector<std::pair<long unsigned int, double> > >; dlib::svm_c_linear_dcd_trainer<K>::scalar_type = double]?
/usr/include/dlib/svm/svm_c_linear_dcd_trainer.h:519:23: required from ?const dlib::decision_function<K> dlib::svm_c_linear_dcd_trainer<K>::do_train(const in_sample_vector_type&, const in_scalar_vector_type&, optimizer_state&) const [with in_sample_vector_type = dlib::matrix_op<dlib::op_std_vect_to_mat<std::vector<std::vector<std::pair<long unsigned int, double> > > > >; in_scalar_vector_type = dlib::matrix_op<dlib::op_std_vect_to_mat<std::vector<double> > >; K = dlib::sparse_linear_kernel<std::vector<std::pair<long unsigned int, double> > >]?
/usr/include/dlib/svm/svm_c_linear_dcd_trainer.h:483:28: required from ?const dlib::decision_function<K> dlib::svm_c_linear_dcd_trainer<K>::train(const in_sample_vector_type&, const in_scalar_vector_type&, optimizer_state&) const [with in_sample_vector_type = std::vector<std::vector<std::pair<long unsigned int, double> > >; in_scalar_vector_type = std::vector<double>; K = dlib::sparse_linear_kernel<std::vector<std::pair<long unsigned int, double> > >]?
/usr/include/dlib/global_optimization/upper_bound_function.h:221:36: required from here
/usr/include/dlib/matrix/matrix_utilities.h:4594:9: error: uninitialized reference member in ?int&&? [-fpermissive]
4594 | op_join_cols(const M1& m1_, const M2& m2_) : m1(m1_),m2(m2_),_nc(std::max(m1.nc(),m2.nc())) {}
| ^~~~~~~~~~~~
/usr/include/dlib/matrix/matrix_utilities.h:4611:80: note: ?int&& dlib::op_join_cols<dlib::matrix_op<dlib::op_colm2<dlib::matrix<double, 0, 1> > >, dlib::matrix_op<dlib::op_uniform_matrix_3<double> > >::is_reference_type? should be initialized
4611 | typedef typename type_selector<T1, T2, is_reference_type<T1>::value && is_reference_type<T3>::value>::type const_ret_type;
| ^~~~~~~~~~~~~~~~~
/usr/include/dlib/matrix/matrix_utilities.h: In instantiation of ?dlib::op_join_cols<M1, M2>::op_join_cols(const M1&, const M2&) [with M1 = dlib::matrix<double, 3, 1, dlib::memory_manager_stateless_kernel_1<char>, dlib::row_major_layout>; M2 = dlib::matrix_op<dlib::op_uniform_matrix_3<double> >]?:
/usr/include/dlib/matrix/matrix_utilities.h:4664:30: required from ?const dlib::matrix_op<dlib::op_join_cols<EXP1, EXP2> > dlib::join_cols(const matrix_exp<EXP>&, const matrix_exp<src_exp>&) [with EXP1 = matrix<double, 3, 1, memory_manager_stateless_kernel_1<char>, row_major_layout>; EXP2 = matrix_op<op_uniform_matrix_3<double> >]?
/usr/include/dlib/matrix/matrix_la.h:1382:30: required from ?void dlib::svd3(const matrix_exp<EXP>&, matrix<typename matrix_exp<EXP>::type, uNR, uNC, MM1, L1>&, matrix<typename matrix_exp<EXP>::type, wN, wX, MM2, L1>&, matrix<typename matrix_exp<EXP>::type, vN, vN, MM3, L1>&) [with EXP = matrix_op<op_trans<matrix<double, 3, 0> > >; long int uNR = 0; long int uNC = 3; long int wN = 3; long int vN = 3; long int wX = 1; MM1 = memory_manager_stateless_kernel_1<char>; MM2 = memory_manager_stateless_kernel_1<char>; MM3 = memory_manager_stateless_kernel_1<char>; L1 = row_major_layout; typename matrix_exp<EXP>::type = double]?
/usr/include/dlib/matrix/matrix_la.h:1430:13: required from ?const dlib::matrix<typename EXP::type, EXP::NC, EXP::NR, typename EXP::mem_manager_type> dlib::pinv_helper(const matrix_exp<EXP>&, double) [with EXP = matrix_op<op_trans<matrix<double, 3, 0> > >; typename EXP::type = double; typename EXP::mem_manager_type = memory_manager_stateless_kernel_1<char>]?
/usr/include/dlib/matrix/matrix_la.h:1457:37: required from ?const dlib::matrix<typename EXP::type, EXP::NC, EXP::NR, typename EXP::mem_manager_type> dlib::pinv(const matrix_exp<EXP>&, double) [with EXP = matrix<double, 3, 0>; typename EXP::type = double; typename EXP::mem_manager_type = memory_manager_stateless_kernel_1<char>]?
/usr/include/dlib/geometry/point_transforms.h:316:44: required from ?dlib::point_transform_affine dlib::find_affine_transform(const std::vector<vector<T, 2> >&, const std::vector<vector<T, 2> >&) [with T = double]?
/usr/include/dlib/geometry/point_transforms.h:645:61: required from here
/usr/include/dlib/matrix/matrix_utilities.h:4594:9: error: uninitialized reference member in ?int&&? [-fpermissive]
4594 | op_join_cols(const M1& m1_, const M2& m2_) : m1(m1_),m2(m2_),_nc(std::max(m1.nc(),m2.nc())) {}
| ^~~~~~~~~~~~
/usr/include/dlib/matrix/matrix_utilities.h:4611:80: note: ?int&& dlib::op_join_cols<dlib::matrix<double, 3, 1, dlib::memory_manager_stateless_kernel_1<char>, dlib::row_major_layout>, dlib::matrix_op<dlib::op_uniform_matrix_3<double> > >::is_reference_type? should be initialized
4611 | typedef typename type_selector<T1, T2, is_reference_type<T1>::value && is_reference_type<T3>::value>::type const_ret_type;
| ^~~~~~~~~~~~~~~~~
/usr/include/dlib/matrix/matrix_utilities.h: In instantiation of ?dlib::op_join_rows<M1, M2>::op_join_rows(const M1&, const M2&) [with M1 = dlib::matrix<double, 3, 0>; M2 = dlib::matrix_op<dlib::op_uniform_matrix_3<double> >]?:
/usr/include/dlib/matrix/matrix_utilities.h:4586:30: required from ?const dlib::matrix_op<dlib::op_join_rows<EXP1, EXP2> > dlib::join_rows(const matrix_exp<EXP>&, const matrix_exp<src_exp>&) [with EXP1 = matrix<double, 3, 0>; EXP2 = matrix_op<op_uniform_matrix_3<double> >]?
/usr/include/dlib/matrix/matrix_la.h:1383:30: required from ?void dlib::svd3(const matrix_exp<EXP>&, matrix<typename matrix_exp<EXP>::type, uNR, uNC, MM1, L1>&, matrix<typename matrix_exp<EXP>::type, wN, wX, MM2, L1>&, matrix<typename matrix_exp<EXP>::type, vN, vN, MM3, L1>&) [with EXP = matrix<double, 3, 0>; long int uNR = 3; long int uNC = 0; long int wN = 0; long int vN = 0; long int wX = 1; MM1 = memory_manager_stateless_kernel_1<char>; MM2 = memory_manager_stateless_kernel_1<char>; MM3 = memory_manager_stateless_kernel_1<char>; L1 = row_major_layout; typename matrix_exp<EXP>::type = double]?
/usr/include/dlib/matrix/matrix_la.h:1430:13: required from ?const dlib::matrix<typename EXP::type, EXP::NC, EXP::NR, typename EXP::mem_manager_type> dlib::pinv_helper(const matrix_exp<EXP>&, double) [with EXP = matrix<double, 3, 0>; typename EXP::type = double; typename EXP::mem_manager_type = memory_manager_stateless_kernel_1<char>]?
/usr/include/dlib/matrix/matrix_la.h:1459:31: required from ?const dlib::matrix<typename EXP::type, EXP::NC, EXP::NR, typename EXP::mem_manager_type> dlib::pinv(const matrix_exp<EXP>&, double) [with EXP = matrix<double, 3, 0>; typename EXP::type = double; typename EXP::mem_manager_type = memory_manager_stateless_kernel_1<char>]?
/usr/include/dlib/geometry/point_transforms.h:316:44: required from ?dlib::point_transform_affine dlib::find_affine_transform(const std::vector<vector<T, 2> >&, const std::vector<vector<T, 2> >&) [with T = double]?
/usr/include/dlib/geometry/point_transforms.h:645:61: required from here
/usr/include/dlib/matrix/matrix_utilities.h:4519:9: error: uninitialized reference member in ?int&&? [-fpermissive]
4519 | op_join_rows(const M1& m1_, const M2& m2_) : m1(m1_),m2(m2_),_nr(std::max(m1.nr(),m2.nr())) {}
| ^~~~~~~~~~~~
/usr/include/dlib/matrix/matrix_utilities.h:4536:80: note: ?int&& dlib::op_join_rows<dlib::matrix<double, 3, 0>, dlib::matrix_op<dlib::op_uniform_matrix_3<double> > >::is_reference_type? should be initialized
4536 | typedef typename type_selector<T1, T2, is_reference_type<T1>::value && is_reference_type<T3>::value>::type const_ret_type;
| ^~~~~~~~~~~~~~~~~
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o plotting/structures.lo plotting/structures.c
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o plotting/plot_utils.lo plotting/plot_utils.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c plotting/probabilities.c -fPIC -DPIC -o plotting/probabilities.o >/dev/null 2>&1
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c plotting/structures.c -fPIC -DPIC -o plotting/.libs/structures.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c plotting/plot_utils.c -fPIC -DPIC -o plotting/.libs/plot_utils.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c plotting/plot_utils.c -fPIC -DPIC -o plotting/plot_utils.o >/dev/null 2>&1
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o plotting/RNApuzzler/RNApuzzler.lo plotting/RNApuzzler/RNApuzzler.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c plotting/RNApuzzler/RNApuzzler.c -fPIC -DPIC -o plotting/RNApuzzler/.libs/RNApuzzler.o
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o plotting/RNApuzzler/RNAturtle.lo plotting/RNApuzzler/RNAturtle.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c plotting/RNApuzzler/RNAturtle.c -fPIC -DPIC -o plotting/RNApuzzler/.libs/RNAturtle.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c plotting/structures.c -fPIC -DPIC -o plotting/structures.o >/dev/null 2>&1
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c plotting/RNApuzzler/RNAturtle.c -fPIC -DPIC -o plotting/RNApuzzler/RNAturtle.o >/dev/null 2>&1
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o params/io.lo params/io.c
/bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c -o params/default.lo params/default.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c params/io.c -fPIC -DPIC -o params/.libs/io.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c params/default.c -fPIC -DPIC -o params/.libs/default.o
make[6]: *** [Makefile:1676: libRNA_concentrations_la-wrap_dlib.lo] Error 1
make[6]: *** Waiting for unfinished jobs....
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c plotting/RNApuzzler/RNApuzzler.c -fPIC -DPIC -o plotting/RNApuzzler/RNApuzzler.o >/dev/null 2>&1
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c params/default.c -fPIC -DPIC -o params/default.o >/dev/null 2>&1
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -DVRNA_WITH_NAVIEW_LAYOUT -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -flto -ffat-lto-objects -fopenmp -ftree-vectorize -pthread -I/usr/include/json-c/ -I/usr/include/libsvm/ -c params/io.c -fPIC -DPIC -o params/io.o >/dev/null 2>&1
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/ViennaRNA'
make[5]: *** [Makefile:1979: all-recursive] Error 1
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/ViennaRNA'
make[4]: *** [Makefile:544: all-recursive] Error 1
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[3]: *** [Makefile:691: all-recursive] Error 1
make[3]: Leaving directory '/<<PKGBUILDDIR>>'
make[2]: *** [Makefile:582: all] Error 2
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build: error: make -j4 returned exit code 2
make[1]: *** [debian/rules:24: override_dh_auto_build] Error 25
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:5: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------
Build finished at 2024-06-23T20:47:43Z
Finished
--------
+------------------------------------------------------------------------------+
| Generic Build Failed Commands |
+------------------------------------------------------------------------------+
apt-get -y --allow-downgrades install mc vim
--------------------------------------------
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
libext2fs2t64 libgpm2 libslang2 libsodium23 libssh2-1t64 mc-data vim-common
vim-runtime
Suggested packages:
gpm antiword arc | arcanist arj cabextract catdoc clzip | lunzip | lzd
| lzip | lziprecover | minilzip | pdlzip | plzip cpio ctorrent dbview
default-jdk-headless djview4 djvulibre-bin elinks epub-utils
| ncbi-entrez-direct exif genisoimage glade gputils gv imagemagick info
jlha-utils | lhasa kchmviewer libaspell-dev libbatik-java libchm-bin
liblz4-tool libxml2-utils links2 links | w3m | lynx lyx mikmod mpg321
mplayer odt2txt | unoconv p7zip-full par2 poedit | potool poppler-utils
procyon-decompiler python3-boto python3-tz rar rpm sox sqlite3 timidity
unace | unace-nonfree unalz unar unrar | unrar-free vorbis-tools wimtools wv
xpdf | pdf-viewer xpmutils zip zstd ctags vim-doc vim-scripts
Recommended packages:
mailcap unzip
The following NEW packages will be installed:
libext2fs2t64 libgpm2 libslang2 libsodium23 libssh2-1t64 mc mc-data vim
vim-common vim-runtime
0 upgraded, 10 newly installed, 0 to remove and 0 not upgraded.
Need to get 12.2 MB of archives.
After this operation, 55.5 MB of additional disk space will be used.
Get:1 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 vim-common all 2:9.1.0496-1 [412 kB]
Get:2 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libext2fs2t64 amd64 1.47.1-1 [210 kB]
Get:3 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libgpm2 amd64 1.20.7-11 [14.0 kB]
Get:4 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libslang2 amd64 2.3.3-5 [551 kB]
Get:5 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libsodium23 amd64 1.0.18-1+b1 [163 kB]
Get:6 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.0-5 [215 kB]
Get:7 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 mc-data all 3:4.8.31-1 [1346 kB]
Get:8 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 mc amd64 3:4.8.31-1 [539 kB]
Get:9 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 vim-runtime all 2:9.1.0496-1 [7117 kB]
Get:10 http://127.0.0.1:3142/ftp.fr.debian.org/debian unstable/main amd64 vim amd64 2:9.1.0496-1 [1619 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 12.2 MB in 0s (26.5 MB/s)
Selecting previously unselected package vim-common.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 44093 files and directories currently installed.)
Preparing to unpack .../0-vim-common_2%3a9.1.0496-1_all.deb ...
Unpacking vim-common (2:9.1.0496-1) ...
Selecting previously unselected package libext2fs2t64:amd64.
Preparing to unpack .../1-libext2fs2t64_1.47.1-1_amd64.deb ...
Adding 'diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64'
Adding 'diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64'
Adding 'diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64'
Adding 'diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64'
Unpacking libext2fs2t64:amd64 (1.47.1-1) ...
Selecting previously unselected package libgpm2:amd64.
Preparing to unpack .../2-libgpm2_1.20.7-11_amd64.deb ...
Unpacking libgpm2:amd64 (1.20.7-11) ...
Selecting previously unselected package libslang2:amd64.
Preparing to unpack .../3-libslang2_2.3.3-5_amd64.deb ...
Unpacking libslang2:amd64 (2.3.3-5) ...
Selecting previously unselected package libsodium23:amd64.
Preparing to unpack .../4-libsodium23_1.0.18-1+b1_amd64.deb ...
Unpacking libsodium23:amd64 (1.0.18-1+b1) ...
Selecting previously unselected package libssh2-1t64:amd64.
Preparing to unpack .../5-libssh2-1t64_1.11.0-5_amd64.deb ...
Unpacking libssh2-1t64:amd64 (1.11.0-5) ...
Selecting previously unselected package mc-data.
Preparing to unpack .../6-mc-data_3%3a4.8.31-1_all.deb ...
Unpacking mc-data (3:4.8.31-1) ...
Selecting previously unselected package mc.
Preparing to unpack .../7-mc_3%3a4.8.31-1_amd64.deb ...
Unpacking mc (3:4.8.31-1) ...
Selecting previously unselected package vim-runtime.
Preparing to unpack .../8-vim-runtime_2%3a9.1.0496-1_all.deb ...
Adding 'diversion of /usr/share/vim/vim91/doc/help.txt to /usr/share/vim/vim91/doc/help.txt.vim-tiny by vim-runtime'
Adding 'diversion of /usr/share/vim/vim91/doc/tags to /usr/share/vim/vim91/doc/tags.vim-tiny by vim-runtime'
Unpacking vim-runtime (2:9.1.0496-1) ...
Selecting previously unselected package vim.
Preparing to unpack .../9-vim_2%3a9.1.0496-1_amd64.deb ...
Unpacking vim (2:9.1.0496-1) ...
Setting up libsodium23:amd64 (1.0.18-1+b1) ...
Setting up libgpm2:amd64 (1.20.7-11) ...
Setting up vim-common (2:9.1.0496-1) ...
Setting up libslang2:amd64 (2.3.3-5) ...
Setting up mc-data (3:4.8.31-1) ...
Setting up libext2fs2t64:amd64 (1.47.1-1) ...
Setting up libssh2-1t64:amd64 (1.11.0-5) ...
Setting up vim-runtime (2:9.1.0496-1) ...
Setting up vim (2:9.1.0496-1) ...
update-alternatives: using /usr/bin/vim.basic to provide /usr/bin/editor (editor) in auto mode
update-alternatives: using /usr/bin/vim.basic to provide /usr/bin/ex (ex) in auto mode
update-alternatives: using /usr/bin/vim.basic to provide /usr/bin/rview (rview) in auto mode
update-alternatives: using /usr/bin/vim.basic to provide /usr/bin/rvim (rvim) in auto mode
update-alternatives: using /usr/bin/vim.basic to provide /usr/bin/vi (vi) in auto mode
update-alternatives: using /usr/bin/vim.basic to provide /usr/bin/view (view) in auto mode
update-alternatives: using /usr/bin/vim.basic to provide /usr/bin/vim (vim) in auto mode
update-alternatives: using /usr/bin/vim.basic to provide /usr/bin/vimdiff (vimdiff) in auto mode
Setting up mc (3:4.8.31-1) ...
Processing triggers for man-db (2.12.1-2) ...
Not building database; man-db/auto-update is not 'true'.
Processing triggers for libc-bin (2.38-13) ...
I: Finished running 'apt-get -y --allow-downgrades install mc vim'.
bash -i </dev/tty >/dev/tty 2>/dev/tty
--------------------------------------
I: Finished running 'bash -i </dev/tty >/dev/tty 2>/dev/tty'.
Finished processing commands.
--------------------------------------------------------------------------------
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
E: Build failure (dpkg-buildpackage died)
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: amd64
Build Type: full
Build-Space: 123128
Build-Time: 74
Distribution: unstable
Fail-Stage: build
Host Architecture: amd64
Install-Time: 1042
Job: /tmp/vienna-rna_2.5.1+dfsg-1.dsc
Machine Architecture: amd64
Package: vienna-rna
Package-Time: 1132
Source-Version: 2.5.1+dfsg-1
Space: 123128
Status: attempted
Version: 2.5.1+dfsg-1
--------------------------------------------------------------------------------
Finished at 2024-06-23T20:47:43Z
Build needed 00:18:52, 123128k disk space
More information about the Debian-med-packaging
mailing list