[Debian-med-packaging] Bug#1074302: unifrac: autopkgtest failure with python3-skbio 0.6.1-1 from experimental

[Michael R. Crusoe]

Source: unifrac
Version: 1.3-2
Severity: important
X-Debbugs-Cc: debian-med at lists.debian.org, crusoe at debian.org

Hello team,

While upgrading the qiime/q2-* packages (specifically q2-diversity-lib), I noticed that there is a new version of python-skbio, 0.6; Testing that in experimental show that unifrac is the only package not compatible with the new version of python-skbio.

https://ci.debian.net/packages/u/unifrac/unstable/amd64/48132933/#L688

There are 4 errors, all with the same message:

 > ValueError: ``taxa`` is required for phylogenetic diversity metrics.

So we need a patch to add in the "taxa" keyword to the calls to skbio.diversity.beta_diversity in unifrac's tests.

Thanks!

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