[Debian-med-packaging] Bug#1065646: igv fails to build from source due to tests trying to access the internet

Vladimir Petko vpa1977 at gmail.com
Fri Mar 8 03:36:00 GMT 2024


Source: igv
Version: 2.17.1+dfsg-1
Severity: normal

Dear Maintainer,

Tests fail when building the package with the following exceptions[1]:

org.broad.igv.sam.mods.BaseModificationCountsTest > incrementCounts2 FAILED
    java.net.UnknownHostException: dl.dropboxusercontent.com

org.broad.igv.util.blat.BlatClientTest > classMethod FAILED
    java.net.UnknownHostException: s3.amazonaws.com

org.broad.igv.tdf.TDFReaderTest > testReader FAILED
    org.broad.igv.exceptions.DataLoadException: An error occurred while
accessing:
http://data.broadinstitute.org/igvdata/tutorials/hg18/wgEncodeBroadChipSeqSignalK562H3k4me3.wig.gz.tdf<br>Error
loading file:

[1] https://launchpad.net/ubuntu/+source/igv/2.17.1+dfsg-1/+build/27788297


-- System Information:
Debian Release: trixie/sid
  APT prefers mantic-updates
  APT policy: (500, 'mantic-updates'), (500, 'mantic-security'), (500, 'mantic'), (100, 'mantic-backports')
Architecture: amd64 (x86_64)
Foreign Architectures: i386

Kernel: Linux 6.5.0-21-generic (SMP w/32 CPU threads; PREEMPT)
Kernel taint flags: TAINT_PROPRIETARY_MODULE, TAINT_OOT_MODULE
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8), LANGUAGE=en
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled



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