[Debian-med-packaging] Bug#1066422: plastimatch: FTBFS: ld: cannot find -lnsl: No such file or directory

Wed Mar 13 12:05:05 GMT 2024

Source: plastimatch
Version: 1.9.4+dfsg.1-2
Severity: serious
Justification: FTBFS
Tags: trixie sid ftbfs
User: lucas at debian.org
Usertags: ftbfs-20240313 ftbfs-trixie

Hi,

During a rebuild of all packages in sid, your package failed to build
on amd64.

Relevant part (hopefully):
> /usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2  -fno-sized-deallocation -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now  -rdynamic -fopenmp CMakeFiles/landmark_diff.dir/landmark_diff_main.cxx.o -o ../../../landmark_diff   -L/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/libs/liblbfgs-1.9  -L/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/libs/specfun  -L/usr/lib/x86_64-linux-gnu/lib  -L/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu  -L/usr/lib/x86_64-linux-gnu/cmake/dcmtk/lib/x86_64-linux-gnu  -L/usr/include  ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 -lz -ljpeg -lexpat -lpng /usr/lib/x86_64-linux-gnu/libITKTestKernel-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKConvolution-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKColormap-5.3.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/x86_64-linux-gnu/libITKDICOMParser-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDenoising-5.3.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_hl.so /usr/lib/x86_64-linux-gnu/libITKIOBruker-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOCSV-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOHDF5-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOJPEG2000-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOLSM-5.3.so.1 -lminc2 -lm -lz -lm -ldl -lnetcdf /usr/lib/x86_64-linux-gnu/libITKIOMINC-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMRC-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKRegistrationMethodsv4-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKReview-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVideoIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVtkGlue-5.3.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libdcmdata.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/x86_64-linux-gnu/libITKIOMeshBYU-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshFreeSurfer-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshGifti-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKgiftiio-5.3.so.1 -lexpat /usr/lib/x86_64-linux-gnu/libITKIOMeshOBJ-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshOFF-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKOptimizersv4-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitklbfgs-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOBMP-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOGDCM-5.3.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.22 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.22 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.22 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.22 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.22 /usr/lib/x86_64-linux-gnu/libITKIOGIPL-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOJPEG-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKQuadEdgeMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeta-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMetaIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIONIFTI-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKniftiio-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKznz-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libITKIONRRD-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKNrrdIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOPNG-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTIFF-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitktiff-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKLabelMap-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKFastMarching-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPolynomials-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKBiasCorrection-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDeformableMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDiffusionTensorImage-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPDEDeformableRegistration-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKFFT-5.3.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/x86_64-linux-gnu/libITKImageFeature-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKOptimizers-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOBioRad-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOGE-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOSiemens-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOIPL-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkopenjpeg-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOSpatialObjects-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOXML-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOStimulate-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformHDF5-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformInsightLegacy-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformMatlab-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKTransformFactory-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKKLMRegionGrowing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMarkovRandomFieldsClassifiers-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKQuadEdgeMeshFiltering-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKRegionGrowing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKWatersheds-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMathematicalMorphology-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKStatistics-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkNetlibSlatec-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKSpatialObjects-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKTransform-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPath-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKSmoothing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOImageBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVideoCore-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKCommon-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkdouble-conversion-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitksys-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libITKVNLInstantiation-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvnl_algo-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvnl-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkv3p_netlib-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvcl-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libvtkRenderingOpenGL2-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingUI-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libGLEW.so /usr/lib/x86_64-linux-gnu/libX11.so /usr/lib/x86_64-linux-gnu/libvtkInteractionWidgets-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkInteractionStyle-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingContext2D-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkImagingSources-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkIOImage-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingFreeType-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libfreetype.so /usr/lib/x86_64-linux-gnu/libvtkImagingCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersSources-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersGeneral-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonExecutionModel-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonDataModel-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonTransforms-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonMisc-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonMath-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkkissfft-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libtbb.so.12.11 /usr/lib/x86_64-linux-gnu/libvtksys-9.1.so.9.1.0 -ldl -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lz /usr/lib/x86_64-linux-gnu/liboflog.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libofstd.so.17.3.6.7 -lnsl -lpthread -lrt -lxml2 
> /usr/bin/ld: cannot find -lnsl: No such file or directory
> collect2: error: ld returned 1 exit status

The full build log is available from:
http://qa-logs.debian.net/2024/03/13/plastimatch_1.9.4+dfsg.1-2_unstable.log

All bugs filed during this archive rebuild are listed at:
https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20240313;users=lucas@debian.org
or:
https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20240313&fusertaguser=lucas@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results

A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects

If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.