[Debian-med-packaging] Bug#1066633: poa: FTBFS: fasta_format.c:48:9: error: implicit declaration of function ‘stringptr_cat_pos’; did you mean ‘stringptr_cat’? [-Werror=implicit-function-declaration]
Lucas Nussbaum
lucas at debian.org
Wed Mar 13 11:55:43 GMT 2024
Source: poa
Version: 2.0+20060928-8
Severity: serious
Justification: FTBFS
Tags: trixie sid ftbfs
User: lucas at debian.org
Usertags: ftbfs-20240313 ftbfs-trixie ftbfs-impfuncdef
Hi,
During a rebuild of all packages in sid, your package failed to build
on amd64.
This is most likely caused by a change in dpkg 1.22.6, that enabled
-Werror=implicit-function-declaration. For more information, see
https://wiki.debian.org/qa.debian.org/FTBFS#A2024-03-13_-Werror.3Dimplicit-function-declaration
Relevant part (hopefully):
> gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -Wdate-time -D_FORTIFY_SOURCE=2 -c -o align_lpo_po2.o align_lpo_po2.c
> In file included from align_lpo_po2.c:2:
> align_lpo_po2.c: In function ‘get_lpo_stats’:
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
> | |
> | long unsigned int
> align_lpo_po2.c:41:3: note: in expansion of macro ‘CALLOC’
> 41 | CALLOC (node_type, len, int);
> | ^~~~~~
> default.h:155:37: note: format string is defined here
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ~^
> | |
> | int
> | %ld
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
> | |
> | long unsigned int
> align_lpo_po2.c:42:3: note: in expansion of macro ‘CALLOC’
> 42 | CALLOC (refs_from_right, len, int);
> | ^~~~~~
> default.h:155:37: note: format string is defined here
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ~^
> | |
> | int
> | %ld
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
> | |
> | long unsigned int
> align_lpo_po2.c:43:3: note: in expansion of macro ‘CALLOC’
> 43 | CALLOC (tmp, len, int);
> | ^~~~~~
> default.h:155:37: note: format string is defined here
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ~^
> | |
> | int
> | %ld
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
> | |
> | long unsigned int
> align_lpo_po2.c:44:3: note: in expansion of macro ‘CALLOC’
> 44 | CALLOC (left_links, len, LPOLetterLink_T *);
> | ^~~~~~
> default.h:155:37: note: format string is defined here
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ~^
> | |
> | int
> | %ld
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
> | |
> | long unsigned int
> align_lpo_po2.c:71:7: note: in expansion of macro ‘CALLOC’
> 71 | CALLOC (left_links[i], 1, LPOLetterLink_T);
> | ^~~~~~
> default.h:155:37: note: format string is defined here
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ~^
> | |
> | int
> | %ld
> fasta_format.c: In function ‘read_fasta’:
> align_lpo_po2.c: In function ‘trace_back_lpo_alignment’:
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
> | |
> | long unsigned int
> align_lpo_po2.c:120:3: note: in expansion of macro ‘CALLOC’
> 120 | CALLOC (x_al, len_x, LPOLetterRef_T);
> | ^~~~~~
> default.h:155:37: note: format string is defined here
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ~^
> | |
> | int
> | %ld
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
> | |
> | long unsigned int
> align_lpo_po2.c:121:3: note: in expansion of macro ‘CALLOC’
> 121 | CALLOC (y_al, len_y, LPOLetterRef_T);
> | ^~~~~~
> default.h:155:37: note: format string is defined here
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ~^
> | |
> | int
> | %ld
> fasta_format.c:48:9: error: implicit declaration of function ‘stringptr_cat_pos’; did you mean ‘stringptr_cat’? [-Werror=implicit-function-declaration]
> 48 | stringptr_cat_pos(&tmp_seq,line,&length);
> | ^~~~~~~~~~~~~~~~~
> | stringptr_cat
> align_lpo_po2.c: In function ‘align_lpo_po’:
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
> | |
> | long unsigned int
> align_lpo_po2.c:227:3: note: in expansion of macro ‘CALLOC’
> 227 | CALLOC (next_gap_array, max_gap_length + 2, int);
> | ^~~~~~
> default.h:155:37: note: format string is defined here
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ~^
> | |
> | int
> | %ld
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
> | |
> | long unsigned int
> align_lpo_po2.c:228:3: note: in expansion of macro ‘CALLOC’
> 228 | CALLOC (next_perp_gap_array, max_gap_length + 2, int);
> | ^~~~~~
> default.h:155:37: note: format string is defined here
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ~^
> | |
> | int
> | %ld
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
> | |
> | long unsigned int
> align_lpo_po2.c:254:3: note: in expansion of macro ‘CALLOC’
> 254 | CALLOC (move, len_y, DPMove_T *);
> | ^~~~~~
> default.h:155:37: note: format string is defined here
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ~^
> | |
> | int
> | %ld
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
> | |
> | long unsigned int
> align_lpo_po2.c:256:5: note: in expansion of macro ‘CALLOC’
> 256 | CALLOC (move[i], len_x, DPMove_T);
> | ^~~~~~
> default.h:155:37: note: format string is defined here
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ~^
> | |
> | int
> | %ld
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
> | |
> | long unsigned int
> align_lpo_po2.c:259:3: note: in expansion of macro ‘CALLOC’
> 259 | CALLOC (init_col_score, len_y+1, DPScore_T);
> | ^~~~~~
> default.h:155:37: note: format string is defined here
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ~^
> | |
> | int
> | %ld
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
> | |
> | long unsigned int
> align_lpo_po2.c:262:3: note: in expansion of macro ‘CALLOC’
> 262 | CALLOC (score_rows, len_y+1, DPScore_T *);
> | ^~~~~~
> default.h:155:37: note: format string is defined here
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ~^
> | |
> | int
> | %ld
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
> | |
> | long unsigned int
> align_lpo_po2.c:264:3: note: in expansion of macro ‘CALLOC’
> 264 | CALLOC (score_rows[-1], len_x+1, DPScore_T);
> | ^~~~~~
> default.h:155:37: note: format string is defined here
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ~^
> | |
> | int
> | %ld
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
> | |
> | long unsigned int
> align_lpo_po2.c:312:5: note: in expansion of macro ‘CALLOC’
> 312 | CALLOC (score_rows[i], len_x+1, DPScore_T);
> | ^~~~~~
> default.h:155:37: note: format string is defined here
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ~^
> | |
> | int
> | %ld
> align_lpo_po2.c:438:44: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 4 has type ‘int’ [-Wformat=]
> 438 | fprintf (stderr, "aligned (%d nodes, %ld edges) to (%d nodes, %ld edges): ", len_x, n_edges_x, len_y, n_edges_y);
> | ~~^ ~~~~~~~~~
> | | |
> | long int int
> | %d
> align_lpo_po2.c:438:69: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 6 has type ‘int’ [-Wformat=]
> 438 | fprintf (stderr, "aligned (%d nodes, %ld edges) to (%d nodes, %ld edges): ", len_x, n_edges_x, len_y, n_edges_y);
> | ~~^ ~~~~~~~~~
> | | |
> | long int int
> | %d
> In file included from black_flag.c:4:
> black_flag.c: In function ‘black_flag_init_args’:
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
> | |
> | long unsigned int
> black_flag.c:109:3: note: in expansion of macro ‘CALLOC’
> 109 | CALLOC(Program_name,len,char);
> | ^~~~~~
> default.h:155:37: note: format string is defined here
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ~^
> | |
> | int
> | %ld
> In file included from align_lpo2.c:2:
> align_lpo2.c: In function ‘get_seq_left_and_final’:
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
> | |
> | long unsigned int
> align_lpo2.c:60:3: note: in expansion of macro ‘CALLOC’
> 60 | CALLOC (is_final_node_x, len_x, int);
> | ^~~~~~
> default.h:155:37: note: format string is defined here
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ~^
> | |
> | int
> | %ld
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
> | |
> | long unsigned int
> align_lpo2.c:66:3: note: in expansion of macro ‘CALLOC’
> 66 | CALLOC (x_left, len_x, LPOLetterLink_T *);
> | ^~~~~~
> default.h:155:37: note: format string is defined here
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ~^
> | |
> | int
> | %ld
> In file included from lpo.h:6,
> from main.c:3:
> main.c: In function ‘main’:
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
> | |
> | long unsigned int
> align_lpo2.c:70:7: note: in expansion of macro ‘CALLOC’
> 70 | CALLOC (x_left[i], 1, LPOLetterLink_T);
> | ^~~~~~
> default.h:155:37: note: format string is defined here
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ~^
> | |
> | int
> | %ld
> ./default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
> | |
> | long unsigned int
> main.c:183:3: note: in expansion of macro ‘CALLOC’
> 183 | CALLOC (input_seqs, max_input_seqs, LPOSequence_T *);
> | ^~~~~~
> ./default.h:155:37: note: format string is defined here
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ~^
> | |
> | int
> | %ld
> align_lpo2.c: In function ‘trace_back_lpo_alignment’:
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
> | |
> | long unsigned int
> align_lpo2.c:96:3: note: in expansion of macro ‘CALLOC’
> 96 | CALLOC (x_al, len_x, LPOLetterRef_T);
> | ^~~~~~
> default.h:155:37: note: format string is defined here
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ~^
> | |
> | int
> | %ld
> ./default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
> 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
> | |
> | long unsigned int
> main.c:221:9: note: in expansion of macro ‘REALLOC’
> 221 | REALLOC (input_seqs, max_input_seqs, LPOSequence_T *);
> | ^~~~~~~
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
> | |
> | long unsigned int
> align_lpo2.c:97:3: note: in expansion of macro ‘CALLOC’
> 97 | CALLOC (y_al, len_y, LPOLetterRef_T);
> | ^~~~~~
> default.h:155:37: note: format string is defined here
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ~^
> | |
> | int
> | %ld
> ./default.h:196:39: note: format string is defined here
> 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \
> | ~^
> | |
> | int
> | %ld
> In file included from ./default.h:16:
> main.c:225:30: warning: format ‘%s’ expects argument of type ‘char *’, but argument 3 has type ‘FILE *’ [-Wformat=]
> 225 | WARN_MSG(USERR,(ERRTXT,"Error reading PO list file %s.\nExiting",
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> 226 | po_list_file),"$Revision: 1.2.2.9 $");
> | ~~~~~~~~~~~~
> | |
> | FILE *
> ./black_flag.h:212:10: note: in definition of macro ‘WARN_MSG’
> 212 | (sprintf MESSAGE,\
> | ^~~~~~~
> main.c:225:59: note: format string is defined here
> 225 | WARN_MSG(USERR,(ERRTXT,"Error reading PO list file %s.\nExiting",
> | ~^
> | |
> | char *
> align_lpo2.c: In function ‘align_lpo’:
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
> | |
> | long unsigned int
> align_lpo2.c:185:3: note: in expansion of macro ‘CALLOC’
> 185 | CALLOC (next_gap_array, max_gap_length + 2, int);
> | ^~~~~~
> default.h:155:37: note: format string is defined here
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ~^
> | |
> | int
> | %ld
> ./default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
> 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
> | |
> | long unsigned int
> main.c:254:9: note: in expansion of macro ‘REALLOC’
> 254 | REALLOC (input_seqs, max_input_seqs, LPOSequence_T *);
> | ^~~~~~~
> ./default.h:196:39: note: format string is defined here
> 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \
> | ~^
> | |
> | int
> | %ld
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
> | |
> | long unsigned int
> align_lpo2.c:186:3: note: in expansion of macro ‘CALLOC’
> 186 | CALLOC (next_perp_gap_array, max_gap_length + 2, int);
> | ^~~~~~
> default.h:155:37: note: format string is defined here
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ~^
> | |
> | int
> | %ld
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
> | |
> | long unsigned int
> align_lpo2.c:199:3: note: in expansion of macro ‘CALLOC’
> 199 | CALLOC (move, len_y, DPMove_T *);
> | ^~~~~~
> default.h:155:37: note: format string is defined here
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ~^
> | |
> | int
> | %ld
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
> | |
> | long unsigned int
> align_lpo2.c:201:5: note: in expansion of macro ‘CALLOC’
> 201 | CALLOC (move[i], len_x, DPMove_T);
> | ^~~~~~
> default.h:155:37: note: format string is defined here
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ~^
> | |
> | int
> | %ld
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
> | |
> | long unsigned int
> align_lpo2.c:204:3: note: in expansion of macro ‘CALLOC’
> 204 | CALLOC (init_col_score, len_y+1, DPScore_T);
> | ^~~~~~
> default.h:155:37: note: format string is defined here
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ~^
> | |
> | int
> | %ld
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
> | |
> | long unsigned int
> align_lpo2.c:207:3: note: in expansion of macro ‘CALLOC’
> 207 | CALLOC (curr_score, len_x+1, DPScore_T);
> | ^~~~~~
> default.h:155:37: note: format string is defined here
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ~^
> | |
> | int
> | %ld
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
> | |
> | long unsigned int
> align_lpo2.c:209:3: note: in expansion of macro ‘CALLOC’
> 209 | CALLOC (prev_score, len_x+1, DPScore_T);
> | ^~~~~~
> default.h:155:37: note: format string is defined here
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ~^
> | |
> | int
> | %ld
> In file included from seq_util.c:2:
> seq_util.c: In function ‘read_score_matrix’:
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
> | |
> | long unsigned int
> seq_util.c:170:3: note: in expansion of macro ‘CALLOC’
> 170 | CALLOC (m->gap_penalty_x, m->max_gap_length+2, LPOScore_T);
> | ^~~~~~
> default.h:155:37: note: format string is defined here
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ~^
> | |
> | int
> | %ld
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
> | |
> | long unsigned int
> seq_util.c:171:3: note: in expansion of macro ‘CALLOC’
> 171 | CALLOC (m->gap_penalty_y, m->max_gap_length+2, LPOScore_T);
> | ^~~~~~
> In file included from msa_format.h:17,
> from msa_format.c:17:
> msa_format.c: In function ‘read_clustal’:
> default.h:155:37: note: format string is defined here
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ~^
> | |
> | int
> | %ld
> default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
> 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
> | |
> | long unsigned int
> msa_format.c:169:7: note: in expansion of macro ‘REALLOC’
> 169 | REALLOC (seq_names, n_seqs, char *);
> | ^~~~~~~
> default.h:196:39: note: format string is defined here
> 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \
> | ~^
> | |
> | int
> | %ld
> default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
> 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
> | |
> | long unsigned int
> msa_format.c:171:7: note: in expansion of macro ‘REALLOC’
> 171 | REALLOC (seq_titles, n_seqs, char *);
> | ^~~~~~~
> default.h:196:39: note: format string is defined here
> 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \
> | ~^
> | |
> | int
> | %ld
> default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
> 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
> | |
> | long unsigned int
> msa_format.c:174:7: note: in expansion of macro ‘REALLOC’
> 174 | REALLOC (aln_mat, n_seqs, char *);
> | ^~~~~~~
> default.h:196:39: note: format string is defined here
> 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \
> | ~^
> | |
> | int
> | %ld
> gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -Wdate-time -D_FORTIFY_SOURCE=2 -c -o buildup_lpo.o buildup_lpo.c
> default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
> 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
> | |
> | long unsigned int
> msa_format.c:176:7: note: in expansion of macro ‘REALLOC’
> 176 | REALLOC (aln_lengths, n_seqs, int);
> | ^~~~~~~
> default.h:196:39: note: format string is defined here
> 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \
> | ~^
> | |
> | int
> | %ld
> default.h:184:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 6 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=]
> 184 | fprintf(stderr,"%s, line %d: *** invalid memory request: %s[%d].\n",\
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> 185 | __FILE__,__LINE__,STRINGIFY(memptr),(NUM)); \
> | ~~~~~
> | |
> | size_t {aka long unsigned int}
> msa_format.c:185:5: note: in expansion of macro ‘REALLOC’
> 185 | REALLOC (aln_mat[curr_seq], aln_lengths[curr_seq] + strlen(aln), char);
> | ^~~~~~~
> default.h:184:68: note: format string is defined here
> 184 | fprintf(stderr,"%s, line %d: *** invalid memory request: %s[%d].\n",\
> | ~^
> | |
> | int
> | %ld
> default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=]
> 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~
> msa_format.c:185:5: note: in expansion of macro ‘REALLOC’
> 185 | REALLOC (aln_mat[curr_seq], aln_lengths[curr_seq] + strlen(aln), char);
> | ^~~~~~~
> default.h:196:34: note: format string is defined here
> 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \
> | ~^
> | |
> | int
> | %ld
> default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
> 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
> | |
> | long unsigned int
> msa_format.c:185:5: note: in expansion of macro ‘REALLOC’
> 185 | REALLOC (aln_mat[curr_seq], aln_lengths[curr_seq] + strlen(aln), char);
> | ^~~~~~~
> default.h:196:39: note: format string is defined here
> 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \
> | ~^
> | |
> | int
> | %ld
> msa_format.c: In function ‘read_pir’:
> default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
> 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
> | |
> | long unsigned int
> msa_format.c:248:7: note: in expansion of macro ‘REALLOC’
> 248 | REALLOC (seq_names, n_seqs, char *);
> | ^~~~~~~
> default.h:196:39: note: format string is defined here
> 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \
> | ~^
> | |
> | int
> | %ld
> default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
> 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
> | |
> | long unsigned int
> msa_format.c:250:7: note: in expansion of macro ‘REALLOC’
> 250 | REALLOC (seq_titles, n_seqs, char *);
> | ^~~~~~~
> default.h:196:39: note: format string is defined here
> 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \
> | ~^
> | |
> | int
> | %ld
> default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
> 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
> | |
> | long unsigned int
> msa_format.c:252:7: note: in expansion of macro ‘REALLOC’
> 252 | REALLOC (aln_mat, n_seqs, char *);
> | ^~~~~~~
> default.h:196:39: note: format string is defined here
> 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \
> | ~^
> | |
> | int
> | %ld
> default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
> 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
> | |
> | long unsigned int
> msa_format.c:254:7: note: in expansion of macro ‘REALLOC’
> 254 | REALLOC (aln_lengths, n_seqs, int);
> | ^~~~~~~
> default.h:196:39: note: format string is defined here
> 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \
> | ~^
> | |
> | int
> | %ld
> default.h:184:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 6 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=]
> 184 | fprintf(stderr,"%s, line %d: *** invalid memory request: %s[%d].\n",\
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> 185 | __FILE__,__LINE__,STRINGIFY(memptr),(NUM)); \
> | ~~~~~
> msa_format.c:268:7: note: in expansion of macro ‘REALLOC’
> 268 | REALLOC (aln_mat[curr_seq], aln_lengths[curr_seq] + strlen(aln), char);
> | ^~~~~~~
> default.h:184:68: note: format string is defined here
> 184 | fprintf(stderr,"%s, line %d: *** invalid memory request: %s[%d].\n",\
> | ~^
> | |
> | int
> | %ld
> default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=]
> 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~
> msa_format.c:268:7: note: in expansion of macro ‘REALLOC’
> 268 | REALLOC (aln_mat[curr_seq], aln_lengths[curr_seq] + strlen(aln), char);
> | ^~~~~~~
> default.h:196:34: note: format string is defined here
> 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \
> | ~^
> | |
> | int
> | %ld
> default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
> 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
> | |
> | long unsigned int
> msa_format.c:268:7: note: in expansion of macro ‘REALLOC’
> 268 | REALLOC (aln_mat[curr_seq], aln_lengths[curr_seq] + strlen(aln), char);
> | ^~~~~~~
> default.h:196:39: note: format string is defined here
> 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \
> | ~^
> | |
> | int
> | %ld
> msa_format.c: In function ‘lpo_from_aln_mat’:
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
> | |
> | long unsigned int
> msa_format.c:318:3: note: in expansion of macro ‘CALLOC’
> 318 | CALLOC (column_ids, n_seqs+1, int *);
> | ^~~~~~
> default.h:155:37: note: format string is defined here
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ~^
> | |
> | int
> | %ld
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
> | |
> | long unsigned int
> msa_format.c:319:3: note: in expansion of macro ‘CALLOC’
> 319 | CALLOC (res_ids, n_seqs+1, int *);
> | ^~~~~~
> default.h:155:37: note: format string is defined here
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ~^
> | |
> | int
> | %ld
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
> | |
> | long unsigned int
> msa_format.c:326:5: note: in expansion of macro ‘CALLOC’
> 326 | CALLOC (column_ids[i], max_aln_length, int);
> | ^~~~~~
> default.h:155:37: note: format string is defined here
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ~^
> | |
> | int
> | %ld
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
> | |
> | long unsigned int
> msa_format.c:327:5: note: in expansion of macro ‘CALLOC’
> 327 | CALLOC (res_ids[i], max_aln_length, int);
> | ^~~~~~
> default.h:155:37: note: format string is defined here
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ~^
> | |
> | int
> | %ld
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
> | |
> | long unsigned int
> msa_format.c:334:3: note: in expansion of macro ‘CALLOC’
> 334 | CALLOC (consens_row, max_aln_length, char);
> | ^~~~~~
> default.h:155:37: note: format string is defined here
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ~^
> | |
> | int
> | %ld
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
> | |
> | long unsigned int
> msa_format.c:347:3: note: in expansion of macro ‘CALLOC’
> 347 | CALLOC (lposeq, 1, LPOSequence_T);
> | ^~~~~~
> default.h:155:37: note: format string is defined here
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ~^
> | |
> | int
> | %ld
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
> | |
> | long unsigned int
> msa_format.c:351:3: note: in expansion of macro ‘CALLOC’
> 351 | CALLOC (lposeq->sequence, max_aln_length+1, char);
> | ^~~~~~
> default.h:155:37: note: format string is defined here
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ~^
> | |
> | int
> | %ld
> default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
> 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
> | |
> | long unsigned int
> msa_format.c:369:3: note: in expansion of macro ‘REALLOC’
> 369 | REALLOC (lposeq->sequence, len+1, char);
> | ^~~~~~~
> default.h:196:39: note: format string is defined here
> 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \
> | ~^
> | |
> | int
> | %ld
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
> | |
> | long unsigned int
> msa_format.c:375:5: note: in expansion of macro ‘CALLOC’
> 375 | CALLOC (curr_seq, 1, LPOSequence_T);
> | ^~~~~~
> default.h:155:37: note: format string is defined here
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ~^
> | |
> | int
> | %ld
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
> | |
> | long unsigned int
> msa_format.c:380:5: note: in expansion of macro ‘CALLOC’
> 380 | CALLOC (curr_seq->sequence, aln_lengths[i]+1, char);
> | ^~~~~~
> default.h:155:37: note: format string is defined here
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ~^
> | |
> | int
> | %ld
> default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
> 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
> | |
> | long unsigned int
> msa_format.c:398:5: note: in expansion of macro ‘REALLOC’
> 398 | REALLOC (curr_seq->sequence, len+1, char);
> | ^~~~~~~
> default.h:196:39: note: format string is defined here
> 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \
> | ~^
> | |
> | int
> | %ld
> msa_format.c:404:5: error: implicit declaration of function ‘build_seq_to_po_index’ [-Werror=implicit-function-declaration]
> 404 | build_seq_to_po_index (lposeq);
> | ^~~~~~~~~~~~~~~~~~~~~
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
> | |
> | long unsigned int
> msa_format.c:406:5: note: in expansion of macro ‘CALLOC’
> 406 | CALLOC (al_x, len, int);
> | ^~~~~~
> default.h:155:37: note: format string is defined here
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ~^
> | |
> | int
> | %ld
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
> | |
> | long unsigned int
> msa_format.c:407:5: note: in expansion of macro ‘CALLOC’
> 407 | CALLOC (al_y, lposeq->length, int);
> | ^~~~~~
> default.h:155:37: note: format string is defined here
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ~^
> | |
> | int
> | %ld
> cc1: some warnings being treated as errors
> msa_format.c:428:5: error: implicit declaration of function ‘fuse_ring_identities’ [-Werror=implicit-function-declaration]
> 428 | fuse_ring_identities (lposeq->length, lposeq->letter,
> | ^~~~~~~~~~~~~~~~~~~~
> msa_format.c: In function ‘filter_sequence_set’:
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
> | |
> | long unsigned int
> msa_format.c:485:3: note: in expansion of macro ‘CALLOC’
> 485 | CALLOC (keep_seq, n_seqs, int);
> | ^~~~~~
> default.h:155:37: note: format string is defined here
> 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
> | ~^
> | |
> | int
> | %ld
> make[2]: *** [<builtin>: fasta_format.o] Error 1
The full build log is available from:
http://qa-logs.debian.net/2024/03/13/poa_2.0+20060928-8_unstable.log
All bugs filed during this archive rebuild are listed at:
https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20240313;users=lucas@debian.org
or:
https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20240313&fusertaguser=lucas@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.
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