[Debian-med-packaging] Bug#1087117: tombo: Python SyntaxWarning

[Graham Inggs]

Source: tombo
Version: 1.5.1-6
User: debian-python at lists.debian.org
Usertags: syntaxwarning

Hi Maintainer

The SyntaxWarning below were emitted when this package was tested with
pipuarts[1].

Regards
Graham


[1] https://piuparts.debian.org/sid/source/t/tombo.html


  Setting up tombo (1.5.1-6+b1) ...
  /usr/lib/python3/dist-packages/tombo/_event_resquiggle.py:68:
SyntaxWarning: invalid escape sequence '\d'
    CIGAR_PAT = re.compile('(\d+)([MIDNSHP=X])')
  /usr/lib/python3/dist-packages/tombo/_plot_commands.py:2253:
SyntaxWarning: invalid escape sequence '\|'
    '`conda list | grep "r-base\|rpy2"` (last columns should match).')
  /usr/lib/python3/dist-packages/tombo/_preprocess.py:156:
SyntaxWarning: invalid escape sequence '\+'
    re.match('\+', fastq_rec[2]) is None):