[Debian-med-packaging] Bug#1087457: python3-pysam: autopkgtest regression with htslib 1.21

Étienne Mollier emollier at debian.org
Wed Nov 13 21:20:04 GMT 2024


Étienne Mollier, on 2024-11-13:
> I would have had a look upstream to check whether there is a new
> version, but it seems this is not the case yet, so this may be a
> good candidate of bug to forward upstream.

Lurking in upstream issue tracker[1] suggests their current
development branch already supports htslib 1.21.

[1]: https://github.com/pysam-developers/pysam/issues/1312

Quoting John Marshall:
>> The link in the sidebar of this repository —
>> https://pysam.readthedocs.io/en/latest/ — corresponds to the
>> in-development code in this git repository, which does indeed
>> wrap HTSlib et al 1.21.

The last upstream release is about seven months old, maybe it is
simply a matter of waiting for a newer pysam version.  Resolving
the problem is now a matter of patience.

Have a nice day,  :)
-- 
  .''`.  Étienne Mollier <emollier at debian.org>
 : :' :  pgp: 8f91 b227 c7d6 f2b1 948c  8236 793c f67e 8f0d 11da
 `. `'   sent from /dev/pts/0, please excuse my verbosity
   `-    on air: Rush - ''2112'' (I Overture/II The Temples Of …
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