[Debian-med-packaging] Bug#1079439: python-biopython: autopkgtest stuck on riscv64

[Étienne Mollier]

Hi Reinhard,

Étienne Mollier, on 2024-09-01:
> 	  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/Tests/test_NCBI_BLAST_tools.py", line 251, in test_fasta_db_prot
> 	    self.assertTrue(os.path.isfile("GenBank/NC_005816.faa.phd"))
> 	AssertionError: False is not true
> 
> It is a bit unclear to my why these nhd and phd files would be
> missing.  This may be a problem with ncbi-blast+, but would need
> further investigation to tell for sure.

That would be #1079439.  Anyway, I started an overnight test and
build with that additional test skipped, and I'm hopeful to send
an upload tomorrow that would resolve the debci hogging (but not
the root cause: that is a separate issue in python3-scipy).

Have a nice day,  :)
-- 
  .''`.  Étienne Mollier <emollier at debian.org>
 : :' :  pgp: 8f91 b227 c7d6 f2b1 948c  8236 793c f67e 8f0d 11da
 `. `'   sent from /dev/pts/1, please excuse my verbosity
   `-    on air: Glass Hammer - Identity Principle
-------------- next part --------------
A non-text attachment was scrubbed...
Name: signature.asc
Type: application/pgp-signature
Size: 833 bytes
Desc: not available
URL: <http://alioth-lists.debian.net/pipermail/debian-med-packaging/attachments/20240904/b34a4bdd/attachment.sig>