[Debian-med-packaging] Bug#1042769: provean: incompatible with cd-hit >= 4.8.1-4

[Andrius Merkys]

Hello,

I finally managed to isolate the difference in cdhit output which causes 
segfaults in provean. It seems that cdhit >= 4.8.1-4 replaced full FASTA 
headers in its output with partial IDs:

diff -r /home/andrius/provean/good/cdhit.cluster 
/home/andrius/provean/bad/cdhit.cluster
1c1
< >gi|119610548|gb|EAW90142.1| tumor protein p53 (Li-Fraumeni syndrome), 
isoform CRA_c
---
 > >EAW90142.1 tumor protein p53 (Li-Fraumeni syndrome), isoform CRA_c 
[Homo sapiens]

I need to look deeper if cdhit could be persuaded to use the old output 
format. If not, provean will have to be adjusted to the change.

Andrius