[Debian-med-packaging] Bug#1110595: autodock-vina ftbfs with boost1.88
Matthias Klose
doko at debian.org
Sat Aug 9 08:34:53 BST 2025
Package: src:autodock-vina
Version: 1.2.7-1
Severity: important
Tags: sid forky
User: debian-devel at lists.debian.org
Usertags: boost1.88
autodock-vina ftbfs with boost1.88:
[...]
g++ -Wdate-time -D_FORTIFY_SOURCE=3 -pthread -ansi -Wno-long-long -O3
-DNDEBUG -std=c++11 -DVERSION=\"v1.2.7\" -I /usr/include -g -O2
-Werror=implicit-function-declaration -fno-omit-frame-pointer
-mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=.
-flto=auto -ffat-lto-objects -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security
-fcf-protection
-fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/autodock-vina-1.2.7-1build2
-fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto -I ../../../src/lib -o
main.o -c ../../../src/main/main.cpp
cc1plus: warning: ‘-Werror=’ argument
‘-Werror=implicit-function-declaration’ is not valid for C++
In file included from /usr/include/boost/math/quaternion.hpp:14,
from ../../../src/lib/quaternion.h:26,
from ../../../src/lib/conf.h:28,
from ../../../src/lib/tree.h:26,
from ../../../src/lib/model.h:29,
from ../../../src/lib/parse_pdbqt.h:27,
from ../../../src/lib/vina.h:40,
from ../../../src/main/main.cpp:30:
/usr/include/boost/math/tools/config.hpp:28:6: warning: #warning
"Boost.Math requires C++14" [-Wcpp]
28 | # warning "Boost.Math requires C++14"
| ^~~~~~~
In file included from /usr/include/boost/math/tools/precision.hpp:15,
from
/usr/include/boost/math/special_functions/sinc.hpp:19,
from /usr/include/boost/math/quaternion.hpp:21:
/usr/include/boost/math/tools/type_traits.hpp:208:12: error: ‘is_final’
has not been declared in ‘std’
208 | using std::is_final;
| ^~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:259:12: error:
‘remove_cv_t’ has not been declared in ‘std’
259 | using std::remove_cv_t;
| ^~~~~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:261:12: error:
‘remove_const_t’ has not been declared in ‘std’
261 | using std::remove_const_t;
| ^~~~~~~~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:263:12: error:
‘remove_volatile_t’ has not been declared in ‘std’
263 | using std::remove_volatile_t;
| ^~~~~~~~~~~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:265:12: error: ‘add_cv_t’
has not been declared in ‘std’
265 | using std::add_cv_t;
| ^~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:267:12: error:
‘add_const_t’ has not been declared in ‘std’
267 | using std::add_const_t;
| ^~~~~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:269:12: error:
‘add_volatile_t’ has not been declared in ‘std’
269 | using std::add_volatile_t;
| ^~~~~~~~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:273:12: error:
‘remove_reference_t’ has not been declared in ‘std’
273 | using std::remove_reference_t;
| ^~~~~~~~~~~~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:275:12: error:
‘add_lvalue_reference_t’ has not been declared in ‘std’
275 | using std::add_lvalue_reference_t;
| ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:277:12: error:
‘add_rvalue_reference_t’ has not been declared in ‘std’
277 | using std::add_rvalue_reference_t;
| ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:281:12: error:
‘remove_pointer_t’ has not been declared in ‘std’
281 | using std::remove_pointer_t;
| ^~~~~~~~~~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:283:12: error:
‘add_pointer_t’ has not been declared in ‘std’
283 | using std::add_pointer_t;
| ^~~~~~~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:287:12: error:
‘make_signed_t’ has not been declared in ‘std’
287 | using std::make_signed_t;
| ^~~~~~~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:289:12: error:
‘make_unsigned_t’ has not been declared in ‘std’
289 | using std::make_unsigned_t;
| ^~~~~~~~~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:293:12: error:
‘remove_extent_t’ has not been declared in ‘std’
293 | using std::remove_extent_t;
| ^~~~~~~~~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:295:12: error:
‘remove_all_extents_t’ has not been declared in ‘std’
295 | using std::remove_all_extents_t;
| ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:299:12: error: ‘decay_t’
has not been declared in ‘std’
299 | using std::decay_t;
| ^~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:301:12: error:
‘enable_if_t’ has not been declared in ‘std’
301 | using std::enable_if_t;
| ^~~~~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:303:12: error:
‘conditional_t’ has not been declared in ‘std’
303 | using std::conditional_t;
| ^~~~~~~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:305:12: error:
‘common_type_t’ has not been declared in ‘std’
305 | using std::common_type_t;
| ^~~~~~~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:307:12: error:
‘underlying_type_t’ has not been declared in ‘std’
307 | using std::underlying_type_t;
| ^~~~~~~~~~~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:402:60: error: ‘is_final’
is not a member of ‘boost::math’; did you mean ‘is_final_v’?
402 | BOOST_MATH_INLINE_CONSTEXPR bool is_final_v =
boost::math::is_final<T>::value;
| ^~~~~~~~
|
is_final_v
/usr/include/boost/math/tools/type_traits.hpp:402:70: error: expected
primary-expression before ‘>’ token
402 | BOOST_MATH_INLINE_CONSTEXPR bool is_final_v =
boost::math::is_final<T>::value;
|
^
/usr/include/boost/math/tools/type_traits.hpp:402:73: error: ‘::value’
has not been declared
402 | BOOST_MATH_INLINE_CONSTEXPR bool is_final_v =
boost::math::is_final<T>::value;
|
^~~~~
/usr/include/boost/math/tools/type_traits.hpp:402:73: note: suggested
alternatives:
In file included from
/usr/include/boost/program_options/value_semantic.hpp:421,
from
/usr/include/boost/program_options/options_description.hpp:13,
from /usr/include/boost/program_options.hpp:15,
from ../../../src/main/main.cpp:29:
/usr/include/boost/program_options/detail/value_semantic.hpp:197:5:
note: ‘boost::program_options::value’
197 | value(T* v)
| ^~~~~
In file included from /usr/include/boost/thread/detail/thread.hpp:33,
from /usr/include/boost/thread/thread_only.hpp:22,
from /usr/include/boost/thread/thread.hpp:12,
from ../../../src/lib/vina.h:37:
/usr/include/boost/bind/bind.hpp:85:25: note: ‘boost::_bi::value’
85 | template<class T> class value
| ^~~~~
In file included from /usr/include/boost/proto/matches.hpp:42,
from /usr/include/boost/phoenix/core/domain.hpp:12,
from /usr/include/boost/phoenix/core/actor.hpp:18,
from /usr/include/boost/log/expressions/attr.hpp:20,
from /usr/include/boost/log/expressions.hpp:20,
from ../../../src/lib/vina.h:34:
/usr/include/boost/proto/traits.hpp:1161:5: note: ‘boost::proto::value’
1161 | value(Expr const &e)
| ^~~~~
In file included from /usr/include/boost/phoenix/core/value.hpp:15,
from
/usr/include/boost/phoenix/scope/local_variable.hpp:15,
from /usr/include/boost/phoenix/operator.hpp:21,
from /usr/include/boost/log/expressions.hpp:32:
/usr/include/boost/phoenix/core/is_value.hpp:30:16: note:
‘boost::phoenix::expression::value’
30 | struct value;
| ^~~~~
/usr/include/boost/proto/traits.hpp:294:16: note:
‘boost::proto::result_of::value’
294 | struct value
| ^~~~~
/usr/include/boost/proto/traits.hpp:824:16: note:
‘boost::proto::functional::value’
824 | struct value
| ^~~~~
make[2]: *** [../../makefile_common:47: main.o] Error 1
make[2]: Leaving directory '/<<PKGBUILDDIR>>/build/linux/release'
make[1]: *** [debian/rules:16: override_dh_auto_build] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:13: binary] Error 2
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