[Debian-med-packaging] Bug#1112654: mosdepth: FTBFS: /usr/share/nimble/regex/regex.nim(859, 18) Error: Exception can raise an unlisted exception: Exception

Santiago Vila sanvila at debian.org
Sun Aug 31 16:32:01 BST 2025


Package: src:mosdepth
Version: 0.3.10+ds-1
Severity: serious
Tags: ftbfs forky sid

Dear maintainer:

During a rebuild of all packages in unstable, your package failed to build.

Note: All the following packages also FTBFS, if you happen to have a fix for any of them
maybe you can also fix some of the others:

src:hts-nim-tools
src:mosdepth
src:nim-hts
src:nim-lapper
src:nim-regex

Below you will find how the build ends (probably the most relevant part,
but not necessarily). If required, the full build log is available here:

https://people.debian.org/~sanvila/build-logs/202508/

About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.

If you could not reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.

If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:mosdepth, so that this is still
visible in the BTS web page for this package.

Thanks.

--------------------------------------------------------------------------------
[...]
 debian/rules clean
dh clean
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
rm -f debian/mosdepth.1
rm -f mosdepth
rm -rf nimcache
rm -f tests/big.bam.csi
rm -f tests/ovl.bam tests/ovl.bam.bai tests/overlapping-pairs.bam.bai tests/overlapping-pairs.bam tests/overlapping-pairs.bam  tests/empty-tids.bam.bai tests/empty-tids.bam tests/big.bam tests/nanopore.bam tests/nanopore.bam.bai
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_clean
 debian/rules binary
dh binary
   dh_update_autotools_config
   dh_autoreconf
   debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
nim c --debuginfo:on -d:release -p:/usr/share/nimble/unicodeplus  -p:/usr/share/nimble/unicodedb  -p:/usr/share/nimble/regex  -p:/usr/share/nimble/docopt -p:/usr/share/nimble/hts --nimcache:/<<PKGBUILDDIR>>/nimcache mosdepth.nim
Hint: used config file '/etc/nim/nim.cfg' [Conf]
Hint: used config file '/etc/nim/config.nims' [Conf]
Hint: used config file '/<<PKGBUILDDIR>>/nim.cfg' [Conf]
................................................................................................................................................................
/usr/share/nimble/regex/regex.nim(839, 29) template/generic instantiation from here
/usr/share/nimble/regex/regex.nim(859, 18) Error: Exception can raise an unlisted exception: Exception
make[1]: *** [debian/rules:14: override_dh_auto_build] Error 1
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:11: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------



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