[Debian-med-packaging] Bug#1112732: bppphyview: FTBFS with CMake 4

Timo Röhling roehling at debian.org
Sun Aug 31 23:33:20 BST 2025 

Source: bppphyview
Version: 0.6.1-5
Severity: serious
Tags: ftbfs
Justification: FTBFS
User: cmake at packages.debian.org
Usertags: cmake-4

-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Dear maintainer,

During a test rebuild for CMake 4, bppphyview failed to rebuild.

Log Summary:
- -------------------------------------------------------------------------------
[...]
+------------------------------------------------------------------------------+


Unpack source
- -------------

- -----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 3.0 (quilt)
Source: bppphyview
Binary: bppphyview
Architecture: any
Version: 0.6.1-5
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Uploaders: Julien Dutheil <julien.dutheil at univ-montp2.fr>, Andreas Tille <tille at debian.org>
Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page
Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/med-team/bppphyview
Vcs-Git: https://salsa.debian.org/med-team/bppphyview.git
Build-Depends: debhelper-compat (= 13), cmake, qt5-qmake, qtdeclarative5-dev, libbpp-qt-dev
Package-List:
 bppphyview deb science optional arch=any
Checksums-Sha1:
 446355d9e390c7eaea90f7ba414f0f33ffc0a094 30264 bppphyview_0.6.1.orig.tar.gz
 1b9288e5dc5219b88b14dffa5c6409843e5200d8 9724 bppphyview_0.6.1-5.debian.tar.xz
Checksums-Sha256:
 dfa4a26590e5cc6e71c69224d4d0659d47efb0b0388411256d773fcfab229f16 30264 bppphyview_0.6.1.orig.tar.gz
 69e06ab3843652b5d1c7e2239ad0e152df113b8ed6adf3c588122d4dcde52daf 9724 bppphyview_0.6.1-5.debian.tar.xz
Files:
 180dcad33be0f17b0f58a9c8651b4a84 30264 bppphyview_0.6.1.orig.tar.gz
 a17c9ee7e1d5ea5f2973621686eab92a 9724 bppphyview_0.6.1-5.debian.tar.xz

- -----BEGIN PGP SIGNATURE-----
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=O15L
- -----END PGP SIGNATURE-----

dpkg-source: warning: cannot verify inline signature for ./bppphyview_0.6.1-5.dsc: no acceptable signature found
dpkg-source: info: extracting bppphyview in /build/reproducible-path/bppphyview-0.6.1
dpkg-source: info: unpacking bppphyview_0.6.1.orig.tar.gz
dpkg-source: info: unpacking bppphyview_0.6.1-5.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying hardening

Check disk space
- ----------------

Sufficient free space for build

User Environment
- ----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
HOME=/sbuild-nonexistent
LANG=C.UTF-8
LC_ALL=C.UTF-8
LOGNAME=sbuild
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SHELL=/bin/sh
USER=sbuild

dpkg-buildpackage
- -----------------

Command: dpkg-buildpackage --sanitize-env -us -uc -b
dpkg-buildpackage: info: source package bppphyview
dpkg-buildpackage: info: source version 0.6.1-5
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Michael R. Crusoe <crusoe at debian.org>
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
 debian/rules clean
dh clean
   dh_clean
 debian/rules binary
dh binary
   dh_update_autotools_config
   dh_autoreconf
   dh_auto_configure
	cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu ..
CMake Error at CMakeLists.txt:7 (cmake_minimum_required):
  Compatibility with CMake < 3.5 has been removed from CMake.

  Update the VERSION argument <min> value.  Or, use the <min>...<max> syntax
  to tell CMake that the project requires at least <min> but has been updated
  to work with policies introduced by <max> or earlier.

  Or, add -DCMAKE_POLICY_VERSION_MINIMUM=3.5 to try configuring anyway.


- -- Configuring incomplete, errors occurred!
	cd obj-aarch64-linux-gnu && tail -v -n \+0 CMakeCache.txt
==> CMakeCache.txt <==
# This is the CMakeCache file.
# For build in directory: /build/reproducible-path/bppphyview-0.6.1/obj-aarch64-linux-gnu
# It was generated by CMake: /usr/bin/cmake
# You can edit this file to change values found and used by cmake.
# If you do not want to change any of the values, simply exit the editor.
# If you do want to change a value, simply edit, save, and exit the editor.
# The syntax for the file is as follows:
# KEY:TYPE=VALUE
# KEY is the name of a variable in the cache.
# TYPE is a hint to GUIs for the type of VALUE, DO NOT EDIT TYPE!.
# VALUE is the current value for the KEY.

########################
# EXTERNAL cache entries
########################

//No help, variable specified on the command line.
CMAKE_BUILD_TYPE:UNINITIALIZED=None

//No help, variable specified on the command line.
CMAKE_EXPORT_NO_PACKAGE_REGISTRY:UNINITIALIZED=ON

//No help, variable specified on the command line.
CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY:UNINITIALIZED=ON

//Value Computed by CMake.
CMAKE_FIND_PACKAGE_REDIRECTS_DIR:STATIC=/build/reproducible-path/bppphyview-0.6.1/obj-aarch64-linux-gnu/CMakeFiles/pkgRedirects

//No help, variable specified on the command line.
CMAKE_FIND_USE_PACKAGE_REGISTRY:UNINITIALIZED=OFF

//No help, variable specified on the command line.
CMAKE_INSTALL_LIBDIR:UNINITIALIZED=lib/aarch64-linux-gnu

//No help, variable specified on the command line.
CMAKE_INSTALL_LOCALSTATEDIR:UNINITIALIZED=/var

//No help, variable specified on the command line.
CMAKE_INSTALL_PREFIX:UNINITIALIZED=/usr

//No help, variable specified on the command line.
CMAKE_INSTALL_RUNSTATEDIR:UNINITIALIZED=/run

//No help, variable specified on the command line.
CMAKE_INSTALL_SYSCONFDIR:UNINITIALIZED=/etc

//No help, variable specified on the command line.
CMAKE_SKIP_INSTALL_ALL_DEPENDENCY:UNINITIALIZED=ON

//No help, variable specified on the command line.
CMAKE_VERBOSE_MAKEFILE:UNINITIALIZED=ON

//No help, variable specified on the command line.
FETCHCONTENT_FULLY_DISCONNECTED:UNINITIALIZED=ON


########################
# INTERNAL cache entries
########################

//This is the directory where this CMakeCache.txt was created
CMAKE_CACHEFILE_DIR:INTERNAL=/build/reproducible-path/bppphyview-0.6.1/obj-aarch64-linux-gnu
//Major version of cmake used to create the current loaded cache
CMAKE_CACHE_MAJOR_VERSION:INTERNAL=4
//Minor version of cmake used to create the current loaded cache
CMAKE_CACHE_MINOR_VERSION:INTERNAL=1
//Patch version of cmake used to create the current loaded cache
CMAKE_CACHE_PATCH_VERSION:INTERNAL=1
//Path to CMake executable.
CMAKE_COMMAND:INTERNAL=/usr/bin/cmake
//Path to cpack program executable.
CMAKE_CPACK_COMMAND:INTERNAL=/usr/bin/cpack
//Path to ctest program executable.
CMAKE_CTEST_COMMAND:INTERNAL=/usr/bin/ctest
//Name of external makefile project generator.
CMAKE_EXTRA_GENERATOR:INTERNAL=
//Name of generator.
CMAKE_GENERATOR:INTERNAL=Unix Makefiles
//Generator instance identifier.
CMAKE_GENERATOR_INSTANCE:INTERNAL=
//Name of generator platform.
CMAKE_GENERATOR_PLATFORM:INTERNAL=
//Name of generator toolset.
CMAKE_GENERATOR_TOOLSET:INTERNAL=
//Source directory with the top level CMakeLists.txt file for this
// project
CMAKE_HOME_DIRECTORY:INTERNAL=/build/reproducible-path/bppphyview-0.6.1
//Name of CMakeLists files to read
CMAKE_LIST_FILE_NAME:INTERNAL=CMakeLists.txt
//number of local generators
CMAKE_NUMBER_OF_MAKEFILES:INTERNAL=1
//Path to CMake installation.
CMAKE_ROOT:INTERNAL=/usr/share/cmake-4.1

dh_auto_configure: error: cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu .. returned exit code 1
make: *** [debian/rules:8: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
- --------------------------------------------------------------------------------
Build finished at 2025-08-29T14:46:00Z

- -------------------------------------------------------------------------------

The above is just how the build ends and not necessarily the most relevant part.
If required, the full build log is available here (for the next 30 days):
https://debusine.debian.net/artifact/2389547/

The most likely cause of build failures is the removed backwards compatibility for
CMake versions earlier than 3.5. You can find additional information in my
debian-devel announcement:

https://lists.debian.org/debian-devel/2025/04/msg00310.html

About the archive rebuild: The build was made on debusine.debian.net,
using sbuild.

You can find the build task here:
https://debusine.debian.net/work-request/152473/

If this is really a bug in one of the build-depends, please use
reassign and affects, so that this is still visible in the BTS web
page for this package.

Thanks,
Timo


-----BEGIN PGP SIGNATURE-----
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=q+WA
-----END PGP SIGNATURE-----

More information about the Debian-med-packaging mailing list