[Debian-med-packaging] Bug#1122309: pbbam: FTBFS with the nocheck build profile
Santiago Vila
sanvila at debian.org
Tue Dec 9 23:12:24 GMT 2025
Package: src:pbbam
Version: 2.4.0+dfsg-2
Severity: serious
Tags: forky sid ftbfs
User: debian-qa at lists.debian.org
Usertags: ftbfs-nocheck-profile
Dear maintainer:
During a rebuild of all packages in unstable using the nocheck build profile,
this package failed to build.
Below you will find the last part of the build log (probably the most
relevant part, but not necessarily). If required, the full build log
is available here:
https://people.debian.org/~sanvila/build-logs/202512/
A wiki page discussing how to reproduce bugs in this category and
possible solutions is available here:
https://wiki.debian.org/qa.debian.org/FTBFS/nocheck
(It's a wiki, so you are welcome to contribute)
About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.
If you cannot reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:pbbam, so that this is still
visible in the BTS web page for this package.
Thanks.
--------------------------------------------------------------------------------
[...]
Working directory: /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/meson-private/tmpm4p2g9ov
Code:
extern int i;
int i;
-----------
Command line: `c++ /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/meson-private/tmpm4p2g9ov/testfile.cpp -o /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/meson-private/tmpm4p2g9ov/output.obj -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -O0 -fpermissive -Wlogical-op` -> 0
Compiler for C++ supports arguments -Wlogical-op: YES
Running compile:
Working directory: /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/meson-private/tmpjzeh932o
Code:
extern int i;
int i;
-----------
Command line: `c++ /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/meson-private/tmpjzeh932o/testfile.cpp -o /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/meson-private/tmpjzeh932o/output.obj -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -O0 -fpermissive -Wrestrict` -> 0
Compiler for C++ supports arguments -Wrestrict: YES
Running compile:
Working directory: /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/meson-private/tmpj2xu88qr
Code:
extern int i;
int i;
-----------
Command line: `c++ /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/meson-private/tmpj2xu88qr/testfile.cpp -o /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/meson-private/tmpj2xu88qr/output.obj -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -O0 -fpermissive -Wnull-dereference` -> 0
Compiler for C++ supports arguments -Wnull-dereference: YES
Running compile:
Working directory: /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/meson-private/tmpsjhsyklu
Code:
extern int i;
int i;
-----------
Command line: `c++ /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/meson-private/tmpsjhsyklu/testfile.cpp -o /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/meson-private/tmpsjhsyklu/output.obj -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -O0 -fpermissive -Wuseless-cast` -> 0
Compiler for C++ supports arguments -Wuseless-cast: YES
Running compile:
Working directory: /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/meson-private/tmph8v6m_t4
Code:
extern int i;
int i;
-----------
Command line: `c++ /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/meson-private/tmph8v6m_t4/testfile.cpp -o /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/meson-private/tmph8v6m_t4/output.obj -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -O0 -fpermissive -Wdouble-promotion` -> 0
Compiler for C++ supports arguments -Wdouble-promotion: YES
Running compile:
Working directory: /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/meson-private/tmpbr4y0pds
Code:
extern int i;
int i;
-----------
Command line: `c++ /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/meson-private/tmpbr4y0pds/testfile.cpp -o /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/meson-private/tmpbr4y0pds/output.obj -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -O0 -fpermissive -Wshadow` -> 0
Compiler for C++ supports arguments -Wshadow: YES
Running compile:
Working directory: /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/meson-private/tmp2p_83ofh
Code:
extern int i;
int i;
-----------
Command line: `c++ /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/meson-private/tmp2p_83ofh/testfile.cpp -o /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/meson-private/tmp2p_83ofh/output.obj -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -O0 -fpermissive -Wformat=1` -> 0
Compiler for C++ supports arguments -Wformat=1: YES
Run-time dependency threads found: YES
Pkg-config binary missing from cross or native file, or env var undefined.
Trying a default Pkg-config fallback at pkg-config
Found pkg-config: YES (/usr/bin/pkg-config) 1.8.1
Determining dependency 'boost' with pkg-config executable '/usr/bin/pkg-config'
env[PKG_CONFIG_PATH]:
env[PKG_CONFIG]: /usr/bin/pkg-config
-----------
Called: `/usr/bin/pkg-config --modversion boost` -> 1
stderr:
Package boost was not found in the pkg-config search path.
Perhaps you should add the directory containing `boost.pc'
to the PKG_CONFIG_PATH environment variable
Package 'boost', required by 'virtual:world', not found
-----------
Checking potential boost root /usr/include/c++
Checking potential boost root /usr/include/x86_64-linux-gnu/c++
Checking potential boost root /usr/include/c++/15
Checking potential boost root /usr/lib/gcc/x86_64-linux-gnu/15
Checking potential boost root /usr/local
Checking potential boost root /usr/include
Running compile:
Working directory: /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/meson-private/tmpma1apsy4
Code:
-----------
Command line: `c++ /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/meson-private/tmpma1apsy4/testfile.cpp -o /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/meson-private/tmpma1apsy4/output.obj -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -O0 -fpermissive --print-search-dirs` -> 0
stdout:
install: /usr/lib/gcc/x86_64-linux-gnu/15/
programs: =/usr/libexec/gcc/x86_64-linux-gnu/15/:/usr/libexec/gcc/x86_64-linux-gnu/15/:/usr/libexec/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/15/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/15/../../../../x86_64-linux-gnu/bin/x86_64-linux-gnu/15/:/usr/lib/gcc/x86_64-linux-gnu/15/../../../../x86_64-linux-gnu/bin/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/15/../../../../x86_64-linux-gnu/bin/
libraries: =/usr/lib/gcc/x86_64-linux-gnu/15/:/usr/lib/gcc/x86_64-linux-gnu/15/../../../../x86_64-linux-gnu/lib/x86_64-linux-gnu/15/:/usr/lib/gcc/x86_64-linux-gnu/15/../../../../x86_64-linux-gnu/lib/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/15/../../../../x86_64-linux-gnu/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/15/../../../x86_64-linux-gnu/15/:/usr/lib/gcc/x86_64-linux-gnu/15/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/15/../../../../lib/:/lib/x86_64-linux-gnu/15/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/15/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/15/../../../../x86_64-linux-gnu/lib/:/usr/lib/gcc/x86_64-linux-gnu/15/../../../:/lib/:/usr/lib/
-----------
- potential library dirs: ['/usr/include/librtmp']
- potential include dirs: ['/usr/include']
Checking potential boost root /usr
- potential library dirs: ['/usr/lib/gcc/x86_64-linux-gnu/15', '/usr/lib/x86_64-linux-gnu', '/usr/lib']
- potential include dirs: ['/usr/include']
- found boost library dir: /usr/lib/x86_64-linux-gnu
- found boost 1.83.0 include dir: /usr/include
- filtered library list:
- <LIB: -M ------ ??? ? 1_83 boost_iostreams /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0>
- <LIB: -M ------ ??? ? 1_83 boost_regex /usr/lib/x86_64-linux-gnu/libboost_regex.so.1.83.0>
- found:
- final compile args: ['-I/usr/include', '-DBOOST_ALL_NO_LIB']
- final link args: []
Run-time dependency Boost found: YES 1.83.0 (/usr)
Determining dependency 'zlib' with pkg-config executable '/usr/bin/pkg-config'
env[PKG_CONFIG_PATH]:
env[PKG_CONFIG]: /usr/bin/pkg-config
-----------
Called: `/usr/bin/pkg-config --modversion zlib` -> 0
stdout:
1.3.1
-----------
env[PKG_CONFIG_PATH]:
env[PKG_CONFIG]: /usr/bin/pkg-config
-----------
Called: `/usr/bin/pkg-config --cflags zlib` -> 0
env[PKG_CONFIG_ALLOW_SYSTEM_LIBS]: 1
env[PKG_CONFIG_PATH]:
env[PKG_CONFIG]: /usr/bin/pkg-config
-----------
Called: `/usr/bin/pkg-config --libs zlib` -> 0
stdout:
-L/usr/lib/x86_64-linux-gnu -lz
-----------
env[PKG_CONFIG_PATH]:
env[PKG_CONFIG]: /usr/bin/pkg-config
-----------
Called: `/usr/bin/pkg-config --libs zlib` -> 0
stdout:
-lz
-----------
Running compile:
Working directory: /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/meson-private/tmppxo0o548
Code:
#include<stddef.h>
#include<stdio.h>
int main(void) {
printf("%ld\n", (long)(sizeof(void *)));
return 0;
}
-----------
Command line: `c++ /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/meson-private/tmppxo0o548/testfile.cpp -o /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/meson-private/tmppxo0o548/output.exe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -O0 -fpermissive -Wl,-z,relro -Wl,-z,now` -> 0
Program stdout:
8
Program stderr:
Running compile:
Working directory: /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/meson-private/tmp66zzy4l_
Code:
int main(void) { return 0; }
-----------
Command line: `c++ /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/meson-private/tmp66zzy4l_/testfile.cpp -o /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/meson-private/tmp66zzy4l_/output.exe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -O0 -fpermissive /usr/lib/x86_64-linux-gnu/libz.so -Wl,--allow-shlib-undefined -Wl,-z,relro -Wl,-z,now` -> 0
Run-time dependency zlib found: YES 1.3.1
Determining dependency 'htslib' with pkg-config executable '/usr/bin/pkg-config'
env[PKG_CONFIG_PATH]:
env[PKG_CONFIG]: /usr/bin/pkg-config
-----------
Called: `/usr/bin/pkg-config --modversion htslib` -> 0
stdout:
1.22.1
-----------
env[PKG_CONFIG_PATH]:
env[PKG_CONFIG]: /usr/bin/pkg-config
-----------
Called: `/usr/bin/pkg-config --cflags htslib` -> 0
env[PKG_CONFIG_ALLOW_SYSTEM_LIBS]: 1
env[PKG_CONFIG_PATH]:
env[PKG_CONFIG]: /usr/bin/pkg-config
-----------
Called: `/usr/bin/pkg-config --libs htslib` -> 0
stdout:
-L/usr/lib/x86_64-linux-gnu -lhts
-----------
env[PKG_CONFIG_PATH]:
env[PKG_CONFIG]: /usr/bin/pkg-config
-----------
Called: `/usr/bin/pkg-config --libs htslib` -> 0
stdout:
-lhts
-----------
Running compile:
Working directory: /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/meson-private/tmpov04me7i
Code:
int main(void) { return 0; }
-----------
Command line: `c++ /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/meson-private/tmpov04me7i/testfile.cpp -o /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/meson-private/tmpov04me7i/output.exe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -O0 -fpermissive /usr/lib/x86_64-linux-gnu/libhts.so -Wl,--allow-shlib-undefined -Wl,-z,relro -Wl,-z,now` -> 0
Run-time dependency htslib found: YES 1.22.1
Determining dependency 'pbcopper' with pkg-config executable '/usr/bin/pkg-config'
env[PKG_CONFIG_PATH]:
env[PKG_CONFIG]: /usr/bin/pkg-config
-----------
Called: `/usr/bin/pkg-config --modversion pbcopper` -> 0
stdout:
2.3.0
-----------
env[PKG_CONFIG_PATH]:
env[PKG_CONFIG]: /usr/bin/pkg-config
-----------
Called: `/usr/bin/pkg-config --cflags pbcopper` -> 0
env[PKG_CONFIG_ALLOW_SYSTEM_LIBS]: 1
env[PKG_CONFIG_PATH]:
env[PKG_CONFIG]: /usr/bin/pkg-config
-----------
Called: `/usr/bin/pkg-config --libs pbcopper` -> 0
stdout:
-L/usr/lib/x86_64-linux-gnu -lpbcopper
-----------
env[PKG_CONFIG_PATH]:
env[PKG_CONFIG]: /usr/bin/pkg-config
-----------
Called: `/usr/bin/pkg-config --libs pbcopper` -> 0
stdout:
-lpbcopper
-----------
Running compile:
Working directory: /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/meson-private/tmp2g9t1f7k
Code:
int main(void) { return 0; }
-----------
Command line: `c++ /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/meson-private/tmp2g9t1f7k/testfile.cpp -o /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/meson-private/tmp2g9t1f7k/output.exe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -O0 -fpermissive /usr/lib/x86_64-linux-gnu/libpbcopper.so -Wl,--allow-shlib-undefined -Wl,-z,relro -Wl,-z,now` -> 0
Run-time dependency pbcopper found: YES 2.3.0
Configuring PbbamVersion.cpp using configuration
Configuring LibraryVersion.h using configuration
Program tools/check-formatting found: YES (/<<PKGBUILDDIR>>/tools/check-formatting)
Program python3 found: YES (/usr/bin/python3)
Program cram3 found: YES (/usr/bin/cram3)
Determining dependency 'gtest_main' with pkg-config executable '/usr/bin/pkg-config'
env[PKG_CONFIG_PATH]:
env[PKG_CONFIG]: /usr/bin/pkg-config
-----------
Called: `/usr/bin/pkg-config --modversion gtest_main` -> 1
stderr:
Package gtest_main was not found in the pkg-config search path.
Perhaps you should add the directory containing `gtest_main.pc'
to the PKG_CONFIG_PATH environment variable
Package 'gtest_main', required by 'virtual:world', not found
-----------
Running compile:
Working directory: /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/meson-private/tmppt2dw7ow
Code:
int main(void) { return 0; }
-----------
Command line: `c++ /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/meson-private/tmppt2dw7ow/testfile.cpp -o /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/meson-private/tmppt2dw7ow/output.exe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -O0 -fpermissive -lgtest -Wl,--allow-shlib-undefined -Wl,-z,relro -Wl,-z,now` -> 1
stderr:
/usr/bin/ld: cannot find -lgtest: No such file or directory
collect2: error: ld returned 1 exit status
-----------
Running compile:
Working directory: /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/meson-private/tmp7esocuxm
Code:
int main(void) { return 0; }
-----------
Command line: `c++ /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/meson-private/tmp7esocuxm/testfile.cpp -o /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/meson-private/tmp7esocuxm/output.exe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -O0 -fpermissive -lgtest_main -Wl,--allow-shlib-undefined -Wl,-z,relro -Wl,-z,now` -> 1
stderr:
/usr/bin/ld: cannot find -lgtest_main: No such file or directory
collect2: error: ld returned 1 exit status
-----------
Run-time dependency GTest found: NO (tried pkgconfig and system)
Looking for a fallback subproject for the dependency gtest
ERROR: Subproject gtest is buildable: NO
../tests/meson.build:10:18: ERROR: Automatic wrap-based subproject downloading is disabled
dh_auto_configure: error: cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb LC_ALL=C.UTF-8 meson setup .. --wrap-mode=nodownload --buildtype=plain --prefix=/usr --sysconfdir=/etc --localstatedir=/var --libdir=lib/x86_64-linux-gnu -Dpython.bytecompile=-1 returned exit code 1
make: *** [debian/rules:13: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------
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