[Debian-med-packaging] Bug#1122324: python-pbcore: FTBFS with the nocheck build profile

[Andreas Tille]

Hi Santiago,

I've applied your patch since I think this builds fine.  The problem
with the new version of numpy inside autopkgtest remains unfortunately.

Thanks a lot for your contribution in any case
   Andreas.

Am Wed, Dec 10, 2025 at 10:19:02AM +0100 schrieb Santiago Vila:
> tags 1122324 patch
> thanks
> 
> Hello.
> 
> This one is weird because in theory I fixed it in version 2.1.2+dfsg-13.
> 
> Maybe I was mistaken (sorry if that's the case), or maybe some of the
> build-dependencies now behave differently. Or maybe I put too much
> trust in the salsa job to check this. If I remember well, it does
> not work and I had to file a bug against salsa ci for that.
> 
> Anyway, my script check-nocheck tells me that this time the bug may be
> fixed by dropping <!nocheck> from python3-biopython in d/control
> (as in the attached patch).
> 
> I leave the upload to you, please double-check.
> 
> Thanks.

> commit 08a14afce8dfe9332298d8781e09e00df1c70e29
> Author: Santiago Vila <sanvila at debian.org>
> Date:   Wed Dec 10 10:15:00 2025 +0100
> 
>     d/control: Drop <!nocheck> from python3-biopython. Closes: #1122324.
> 
> diff --git a/debian/control b/debian/control
> index cf64425..702e288 100644
> --- a/debian/control
> +++ b/debian/control
> @@ -18,7 +18,7 @@ Build-Depends: debhelper-compat (= 13),
>                 python3-pytest-runner <!nocheck>,
>                 python3-pytest-xdist <!nocheck>,
>                 python3-pytest-cov <!nocheck>,
> -               python3-biopython <!nocheck>,
> +               python3-biopython,
>                 python3-xmlschema <!nocheck>,
>                 pylint,
>                 python3-coverage


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