[Debian-med-packaging] Bug#1123263: python-loompy: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.14 3.13" returned exit code 13
Santiago Vila
sanvila at debian.org
Tue Dec 16 19:47:41 GMT 2025
Package: src:python-loompy
Version: 3.0.7+dfsg-4
Severity: serious
Tags: ftbfs forky sid
Dear maintainer:
During a rebuild of all packages in unstable, this package failed to build.
Below you will find the last part of the build log (probably the most
relevant part, but not necessarily). If required, the full build log
is available here:
https://people.debian.org/~sanvila/build-logs/202512/
About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.
If you cannot reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:python-loompy, so that this is still
visible in the BTS web page for this package.
Thanks.
--------------------------------------------------------------------------------
[...]
debian/rules clean
dh clean --buildsystem=pybuild
dh_auto_clean -O--buildsystem=pybuild
pybuild --clean -i python{version} -p "3.14 3.13"
I: pybuild base:317: python3.14 setup.py clean
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_loompy/build' (and everything under it)
'build/bdist.linux-x86_64' does not exist -- can't clean it
'build/scripts-3.14' does not exist -- can't clean it
I: pybuild base:317: python3.13 setup.py clean
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_loompy/build' (and everything under it)
'build/bdist.linux-x86_64' does not exist -- can't clean it
'build/scripts-3.13' does not exist -- can't clean it
rm -rf .pybuild/
find . -name \*.pyc -exec rm {} \;
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
rm -f debian/debhelper-build-stamp
rm -rf debian/.debhelper/
rm -f -- debian/python3-loompy.substvars debian/files
rm -fr -- debian/python3-loompy/ debian/tmp/
find . \( \( \
\( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \
\( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
-o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
-o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
-o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
\) -exec rm -f {} + \) -o \
\( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \)
debian/rules binary
dh binary --buildsystem=pybuild
dh_update_autotools_config -O--buildsystem=pybuild
dh_autoreconf -O--buildsystem=pybuild
dh_auto_configure -O--buildsystem=pybuild
pybuild --configure -i python{version} -p "3.14 3.13"
I: pybuild base:317: python3.14 setup.py config
running config
I: pybuild base:317: python3.13 setup.py config
running config
dh_auto_build -O--buildsystem=pybuild
pybuild --build -i python{version} -p "3.14 3.13"
I: pybuild base:317: /usr/bin/python3.14 setup.py build
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_loompy/build/loompy
copying loompy/metadata_loaders.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_loompy/build/loompy
copying loompy/global_attribute_manager.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_loompy/build/loompy
copying loompy/to_html.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_loompy/build/loompy
copying loompy/cell_calling.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_loompy/build/loompy
copying loompy/attribute_manager.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_loompy/build/loompy
copying loompy/normalize.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_loompy/build/loompy
copying loompy/loom_validator.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_loompy/build/loompy
copying loompy/layer_manager.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_loompy/build/loompy
copying loompy/loompy.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_loompy/build/loompy
copying loompy/loom_view.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_loompy/build/loompy
copying loompy/utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_loompy/build/loompy
copying loompy/loom_layer.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_loompy/build/loompy
copying loompy/graph_manager.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_loompy/build/loompy
copying loompy/commands.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_loompy/build/loompy
copying loompy/bus_file.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_loompy/build/loompy
copying loompy/view_manager.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_loompy/build/loompy
copying loompy/_version.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_loompy/build/loompy
copying loompy/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_loompy/build/loompy
I: pybuild base:317: /usr/bin/python3 setup.py build
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_loompy/build/loompy
copying loompy/metadata_loaders.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_loompy/build/loompy
copying loompy/global_attribute_manager.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_loompy/build/loompy
copying loompy/to_html.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_loompy/build/loompy
copying loompy/cell_calling.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_loompy/build/loompy
copying loompy/attribute_manager.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_loompy/build/loompy
copying loompy/normalize.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_loompy/build/loompy
copying loompy/loom_validator.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_loompy/build/loompy
copying loompy/layer_manager.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_loompy/build/loompy
copying loompy/loompy.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_loompy/build/loompy
copying loompy/loom_view.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_loompy/build/loompy
copying loompy/utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_loompy/build/loompy
copying loompy/loom_layer.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_loompy/build/loompy
copying loompy/graph_manager.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_loompy/build/loompy
copying loompy/commands.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_loompy/build/loompy
copying loompy/bus_file.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_loompy/build/loompy
copying loompy/view_manager.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_loompy/build/loompy
copying loompy/_version.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_loompy/build/loompy
copying loompy/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_loompy/build/loompy
dh_auto_test -O--buildsystem=pybuild
pybuild --test --test-pytest -i python{version} -p "3.14 3.13"
I: pybuild base:317: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_loompy/build; python3.14 -m pytest tests
============================= test session starts ==============================
platform linux -- Python 3.14.2, pytest-9.0.2, pluggy-1.6.0
rootdir: /<<PKGBUILDDIR>>
plugins: typeguard-4.4.4
collected 0 items / 5 errors
==================================== ERRORS ====================================
_ ERROR collecting .pybuild/cpython3_3.14_loompy/build/tests/test_attribute_manager.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_loompy/build/tests/test_attribute_manager.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
/usr/lib/python3/dist-packages/numba/core/typeconv/typeconv.py:4: in <module>
from numba.core.typeconv import _typeconv
E ImportError: cannot import name '_typeconv' from 'numba.core.typeconv' (/usr/lib/python3/dist-packages/numba/core/typeconv/__init__.py)
During handling of the above exception, another exception occurred:
/usr/lib/python3.14/importlib/__init__.py:88: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
tests/test_attribute_manager.py:3: in <module>
from loompy import AttributeManager
loompy/__init__.py:14: in <module>
from .bus_file import create_from_fastq
loompy/bus_file.py:14: in <module>
from numba import jit
/usr/lib/python3/dist-packages/numba/__init__.py:77: in <module>
from numba.misc.special import (
/usr/lib/python3/dist-packages/numba/misc/special.py:3: in <module>
from numba.core.typing.typeof import typeof
/usr/lib/python3/dist-packages/numba/core/typing/__init__.py:1: in <module>
from .context import BaseContext, Context
/usr/lib/python3/dist-packages/numba/core/typing/context.py:10: in <module>
from numba.core.typeconv import Conversion, rules
/usr/lib/python3/dist-packages/numba/core/typeconv/rules.py:2: in <module>
from .typeconv import TypeManager, TypeCastingRules
/usr/lib/python3/dist-packages/numba/core/typeconv/typeconv.py:16: in <module>
raise ImportError(msg)
E ImportError: Numba could not be imported.
E --------------------------------------------------------------------------------
E If you are seeing this message and are undertaking Numba development work, you may need to rebuild Numba.
E Please see the development set up guide:
E
E https://numba.readthedocs.io/en/stable/developer/contributing.html.
E
E --------------------------------------------------------------------------------
E If you are not working on Numba development, the original error was: 'cannot import name '_typeconv' from 'numba.core.typeconv' (/usr/lib/python3/dist-packages/numba/core/typeconv/__init__.py)'.
E For help, please visit:
E
E https://numba.readthedocs.io/en/stable/user/faq.html#numba-could-not-be-imported
_ ERROR collecting .pybuild/cpython3_3.14_loompy/build/tests/test_connection.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_loompy/build/tests/test_connection.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
/usr/lib/python3/dist-packages/numba/core/typeconv/typeconv.py:4: in <module>
from numba.core.typeconv import _typeconv
E ImportError: cannot import name '_typeconv' from 'numba.core.typeconv' (/usr/lib/python3/dist-packages/numba/core/typeconv/__init__.py)
During handling of the above exception, another exception occurred:
/usr/lib/python3.14/importlib/__init__.py:88: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
tests/test_connection.py:6: in <module>
import loompy
loompy/__init__.py:14: in <module>
from .bus_file import create_from_fastq
loompy/bus_file.py:14: in <module>
from numba import jit
/usr/lib/python3/dist-packages/numba/__init__.py:77: in <module>
from numba.misc.special import (
/usr/lib/python3/dist-packages/numba/misc/special.py:3: in <module>
from numba.core.typing.typeof import typeof
/usr/lib/python3/dist-packages/numba/core/typing/__init__.py:1: in <module>
from .context import BaseContext, Context
/usr/lib/python3/dist-packages/numba/core/typing/context.py:10: in <module>
from numba.core.typeconv import Conversion, rules
/usr/lib/python3/dist-packages/numba/core/typeconv/rules.py:2: in <module>
from .typeconv import TypeManager, TypeCastingRules
/usr/lib/python3/dist-packages/numba/core/typeconv/typeconv.py:16: in <module>
raise ImportError(msg)
E ImportError: Numba could not be imported.
E --------------------------------------------------------------------------------
E If you are seeing this message and are undertaking Numba development work, you may need to rebuild Numba.
E Please see the development set up guide:
E
E https://numba.readthedocs.io/en/stable/developer/contributing.html.
E
E --------------------------------------------------------------------------------
E If you are not working on Numba development, the original error was: 'cannot import name '_typeconv' from 'numba.core.typeconv' (/usr/lib/python3/dist-packages/numba/core/typeconv/__init__.py)'.
E For help, please visit:
E
E https://numba.readthedocs.io/en/stable/user/faq.html#numba-could-not-be-imported
_ ERROR collecting .pybuild/cpython3_3.14_loompy/build/tests/test_file_attribute_manager.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_loompy/build/tests/test_file_attribute_manager.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
/usr/lib/python3/dist-packages/numba/core/typeconv/typeconv.py:4: in <module>
from numba.core.typeconv import _typeconv
E ImportError: cannot import name '_typeconv' from 'numba.core.typeconv' (/usr/lib/python3/dist-packages/numba/core/typeconv/__init__.py)
During handling of the above exception, another exception occurred:
/usr/lib/python3.14/importlib/__init__.py:88: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
tests/test_file_attribute_manager.py:8: in <module>
from loompy import GlobalAttributeManager
loompy/__init__.py:14: in <module>
from .bus_file import create_from_fastq
loompy/bus_file.py:14: in <module>
from numba import jit
/usr/lib/python3/dist-packages/numba/__init__.py:77: in <module>
from numba.misc.special import (
/usr/lib/python3/dist-packages/numba/misc/special.py:3: in <module>
from numba.core.typing.typeof import typeof
/usr/lib/python3/dist-packages/numba/core/typing/__init__.py:1: in <module>
from .context import BaseContext, Context
/usr/lib/python3/dist-packages/numba/core/typing/context.py:10: in <module>
from numba.core.typeconv import Conversion, rules
/usr/lib/python3/dist-packages/numba/core/typeconv/rules.py:2: in <module>
from .typeconv import TypeManager, TypeCastingRules
/usr/lib/python3/dist-packages/numba/core/typeconv/typeconv.py:16: in <module>
raise ImportError(msg)
E ImportError: Numba could not be imported.
E --------------------------------------------------------------------------------
E If you are seeing this message and are undertaking Numba development work, you may need to rebuild Numba.
E Please see the development set up guide:
E
E https://numba.readthedocs.io/en/stable/developer/contributing.html.
E
E --------------------------------------------------------------------------------
E If you are not working on Numba development, the original error was: 'cannot import name '_typeconv' from 'numba.core.typeconv' (/usr/lib/python3/dist-packages/numba/core/typeconv/__init__.py)'.
E For help, please visit:
E
E https://numba.readthedocs.io/en/stable/user/faq.html#numba-could-not-be-imported
___ ERROR collecting .pybuild/cpython3_3.14_loompy/build/tests/test_main.py ____
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_loompy/build/tests/test_main.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
/usr/lib/python3/dist-packages/numba/core/typeconv/typeconv.py:4: in <module>
from numba.core.typeconv import _typeconv
E ImportError: cannot import name '_typeconv' from 'numba.core.typeconv' (/usr/lib/python3/dist-packages/numba/core/typeconv/__init__.py)
During handling of the above exception, another exception occurred:
/usr/lib/python3.14/importlib/__init__.py:88: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
tests/test_main.py:1: in <module>
import loompy
loompy/__init__.py:14: in <module>
from .bus_file import create_from_fastq
loompy/bus_file.py:14: in <module>
from numba import jit
/usr/lib/python3/dist-packages/numba/__init__.py:77: in <module>
from numba.misc.special import (
/usr/lib/python3/dist-packages/numba/misc/special.py:3: in <module>
from numba.core.typing.typeof import typeof
/usr/lib/python3/dist-packages/numba/core/typing/__init__.py:1: in <module>
from .context import BaseContext, Context
/usr/lib/python3/dist-packages/numba/core/typing/context.py:10: in <module>
from numba.core.typeconv import Conversion, rules
/usr/lib/python3/dist-packages/numba/core/typeconv/rules.py:2: in <module>
from .typeconv import TypeManager, TypeCastingRules
/usr/lib/python3/dist-packages/numba/core/typeconv/typeconv.py:16: in <module>
raise ImportError(msg)
E ImportError: Numba could not be imported.
E --------------------------------------------------------------------------------
E If you are seeing this message and are undertaking Numba development work, you may need to rebuild Numba.
E Please see the development set up guide:
E
E https://numba.readthedocs.io/en/stable/developer/contributing.html.
E
E --------------------------------------------------------------------------------
E If you are not working on Numba development, the original error was: 'cannot import name '_typeconv' from 'numba.core.typeconv' (/usr/lib/python3/dist-packages/numba/core/typeconv/__init__.py)'.
E For help, please visit:
E
E https://numba.readthedocs.io/en/stable/user/faq.html#numba-could-not-be-imported
_ ERROR collecting .pybuild/cpython3_3.14_loompy/build/tests/test_validator.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_loompy/build/tests/test_validator.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
/usr/lib/python3/dist-packages/numba/core/typeconv/typeconv.py:4: in <module>
from numba.core.typeconv import _typeconv
E ImportError: cannot import name '_typeconv' from 'numba.core.typeconv' (/usr/lib/python3/dist-packages/numba/core/typeconv/__init__.py)
During handling of the above exception, another exception occurred:
/usr/lib/python3.14/importlib/__init__.py:88: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
tests/test_validator.py:6: in <module>
import loompy
loompy/__init__.py:14: in <module>
from .bus_file import create_from_fastq
loompy/bus_file.py:14: in <module>
from numba import jit
/usr/lib/python3/dist-packages/numba/__init__.py:77: in <module>
from numba.misc.special import (
/usr/lib/python3/dist-packages/numba/misc/special.py:3: in <module>
from numba.core.typing.typeof import typeof
/usr/lib/python3/dist-packages/numba/core/typing/__init__.py:1: in <module>
from .context import BaseContext, Context
/usr/lib/python3/dist-packages/numba/core/typing/context.py:10: in <module>
from numba.core.typeconv import Conversion, rules
/usr/lib/python3/dist-packages/numba/core/typeconv/rules.py:2: in <module>
from .typeconv import TypeManager, TypeCastingRules
/usr/lib/python3/dist-packages/numba/core/typeconv/typeconv.py:16: in <module>
raise ImportError(msg)
E ImportError: Numba could not be imported.
E --------------------------------------------------------------------------------
E If you are seeing this message and are undertaking Numba development work, you may need to rebuild Numba.
E Please see the development set up guide:
E
E https://numba.readthedocs.io/en/stable/developer/contributing.html.
E
E --------------------------------------------------------------------------------
E If you are not working on Numba development, the original error was: 'cannot import name '_typeconv' from 'numba.core.typeconv' (/usr/lib/python3/dist-packages/numba/core/typeconv/__init__.py)'.
E For help, please visit:
E
E https://numba.readthedocs.io/en/stable/user/faq.html#numba-could-not-be-imported
=========================== short test summary info ============================
ERROR tests/test_attribute_manager.py
ERROR tests/test_connection.py
ERROR tests/test_file_attribute_manager.py
ERROR tests/test_main.py
ERROR tests/test_validator.py
!!!!!!!!!!!!!!!!!!! Interrupted: 5 errors during collection !!!!!!!!!!!!!!!!!!!!
============================== 5 errors in 0.74s ===============================
E: pybuild pybuild:389: test: plugin distutils failed with: exit code=2: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_loompy/build; python3.14 -m pytest tests
I: pybuild base:317: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_loompy/build; python3.13 -m pytest tests
============================= test session starts ==============================
platform linux -- Python 3.13.11, pytest-9.0.2, pluggy-1.6.0
rootdir: /<<PKGBUILDDIR>>
plugins: typeguard-4.4.4
collected 7 items
tests/test_attribute_manager.py .. [ 28%]
tests/test_connection.py . [ 42%]
tests/test_file_attribute_manager.py . [ 57%]
tests/test_main.py .. [ 85%]
tests/test_validator.py . [100%]
=============================== warnings summary ===============================
.pybuild/cpython3_3.13_loompy/build/tests/test_connection.py: 7 warnings
.pybuild/cpython3_3.13_loompy/build/tests/test_main.py: 22 warnings
.pybuild/cpython3_3.13_loompy/build/tests/test_validator.py: 1 warning
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_loompy/build/loompy/utils.py:15: DeprecationWarning: datetime.datetime.utcnow() is deprecated and scheduled for removal in a future version. Use timezone-aware objects to represent datetimes in UTC: datetime.datetime.now(datetime.UTC).
return datetime.datetime.utcnow().strftime("%Y%m%dT%H%M%S.%fZ")
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
======================== 7 passed, 30 warnings in 1.19s ========================
rm -fr -- /tmp/dh-xdg-rundir-OYADaoLF
dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.14 3.13" returned exit code 13
make: *** [debian/rules:7: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------
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