[Debian-med-packaging] Bug#1098063: veryfasttree: ftbfs with GCC-15
Matthias Klose
doko at debian.org
Mon Feb 17 17:59:15 GMT 2025
Package: src:veryfasttree
Version: 4.0.4+dfsg-1
Severity: important
Tags: sid forky
User: debian-gcc at lists.debian.org
Usertags: ftbfs-gcc-15
[This bug is NOT targeted to the upcoming trixie release]
Please keep this issue open in the bug tracker for the package it
was filed for. If a fix in another package is required, please
file a bug for the other package (or clone), and add a block in this
package. Please keep the issue open until the package can be built in
a follow-up test rebuild.
The package fails to build in a test rebuild on at least amd64 with
gcc-15/g++-15, but succeeds to build with gcc-14/g++-14. The
severity of this report will be raised before the forky release.
The full build log can be found at:
http://qa-logs.debian.net/2025/02/16/amd64exp/veryfasttree_4.0.4+dfsg-1_unstable_gccexp.log.gz
The last lines of the build log are at the end of this report.
To build with GCC 15, either set CC=gcc-15 CXX=g++-15 explicitly,
or install the gcc, g++, gfortran, ... packages from experimental.
apt-get -t=experimental install g++
GCC 15 now defaults to the C23/C++23 standards, exposing many FTBFS.
Other Common build failures are new warnings resulting in build failures
with -Werror turned on, or new/dropped symbols in Debian symbols files.
For other C/C++ related build failures see the porting guide at
http://gcc.gnu.org/gcc-15/porting_to.html
[...]
5626 | std::list<double> tendency;
| ^~~~~~~~
In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33,
from /usr/include/c++/15/bits/allocator.h:46,
from /usr/include/c++/15/string:45,
from /usr/include/c++/15/bits/locale_classes.h:42,
from /usr/include/c++/15/bits/ios_base.h:43,
from /usr/include/c++/15/ios:46,
from /usr/include/c++/15/bits/ostream.h:43,
from /usr/include/c++/15/ostream:42,
from /usr/include/c++/15/iostream:43,
from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../Utils.h:6,
from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeFloat.cpp:1:
In member function ‘void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node<double>]’,
inlined from ‘static void std::allocator_traits<std::allocator<_CharT> >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node<double>]’ at /usr/include/c++/15/bits/alloc_traits.h:649:23,
inlined from ‘void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/15/bits/stl_list.h:820:32,
inlined from ‘void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/15/bits/stl_list.h:855:19,
inlined from ‘void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/15/bits/stl_list.h:2474:23,
inlined from ‘void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/15/bits/stl_list.h:1787:23,
inlined from ‘veryfasttree::NeighbourJoining<float, veryfasttree::BasicOperations>::treePartitioning(int)::<lambda()>’ at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5660:31,
inlined from ‘std::vector<long int> veryfasttree::NeighbourJoining<Precision, Operations>::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]’ at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5674:17:
/usr/include/c++/15/bits/new_allocator.h:172:66: warning: ‘void operator delete(void*)’ called on unallocated object ‘tendency’ [-Wfree-nonheap-object]
172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n));
| ^
In file included from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.h:845,
from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../VeyFastTreeImpl.h:15,
from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeFloat.cpp:3:
/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc: In member function ‘std::vector<long int> veryfasttree::NeighbourJoining<Precision, Operations>::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]’:
/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here
5626 | std::list<double> tendency;
| ^~~~~~~~
In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33,
from /usr/include/c++/15/bits/allocator.h:46,
from /usr/include/c++/15/string:45,
from /usr/include/c++/15/bits/locale_classes.h:42,
from /usr/include/c++/15/bits/ios_base.h:43,
from /usr/include/c++/15/ios:46,
from /usr/include/c++/15/bits/ostream.h:43,
from /usr/include/c++/15/ostream:42,
from /usr/include/c++/15/iostream:43,
from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../Utils.h:6,
from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp:2:
In member function ‘void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node<double>]’,
inlined from ‘static void std::allocator_traits<std::allocator<_CharT> >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node<double>]’ at /usr/include/c++/15/bits/alloc_traits.h:649:23,
inlined from ‘void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/15/bits/stl_list.h:820:32,
inlined from ‘void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/15/bits/stl_list.h:855:19,
inlined from ‘void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/15/bits/stl_list.h:2474:23,
inlined from ‘void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/15/bits/stl_list.h:1787:23,
inlined from ‘veryfasttree::NeighbourJoining<double, veryfasttree::SSE128Operations>::treePartitioning(int)::<lambda()>’ at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5660:31,
inlined from ‘std::vector<long int> veryfasttree::NeighbourJoining<Precision, Operations>::treePartitioning(int) [with Precision = double; Operations = veryfasttree::SSE128Operations]’ at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5674:17:
/usr/include/c++/15/bits/new_allocator.h:172:66: warning: ‘void operator delete(void*)’ called on unallocated object ‘tendency’ [-Wfree-nonheap-object]
172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n));
| ^
In file included from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.h:845,
from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../VeyFastTreeImpl.h:15,
from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp:4:
/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc: In member function ‘std::vector<long int> veryfasttree::NeighbourJoining<Precision, Operations>::treePartitioning(int) [with Precision = double; Operations = veryfasttree::SSE128Operations]’:
/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here
5626 | std::list<double> tendency;
| ^~~~~~~~
make[4]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.4+dfsg/build_sse2'
make[3]: *** [CMakeFiles/Makefile2:135: CMakeFiles/VeryFastTree.dir/all] Error 2
make[3]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.4+dfsg/build_sse2'
make[2]: *** [Makefile:139: all] Error 2
make[2]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.4+dfsg/build_sse2'
dh_auto_build: error: cd build_sse2 && make -j8 "INSTALL=install --strip-program=true" VERBOSE=1 returned exit code 2
make[1]: *** [debian/rules:28: override_dh_auto_build] Error 25
make[1]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.4+dfsg'
make: *** [debian/rules:10: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
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