[Debian-med-packaging] Bug#1096727: [Sender Not Verified] Fwd: Bug#1096727: gmap: ftbfs with GCC-15

[Thomas Wu]

Thanks for reporting the bug and for providing a patch.  We will
incorporate your patches into all future releases.

Regards,

Tom


Thomas D. Wu, M.D., Ph.D.

Distinguished Scientist, Bioinformatics & Computational Biology

Genentech <https://www.gene.com/>, A Member of the Roche Group

twu at gene.com

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On Tue, Feb 25, 2025 at 2:06 PM Étienne Mollier <emollier at debian.org> wrote:

> Control: forwarded -1 twu at gene.com
> Control: tags -1 + patch
>
> Hi Thomas,
>
> For information, we noticed in Debian bug #1096727[1] that gmap
> failed to build from source with Gcc 15 due to using by default
> the standard C 2023.
>
> [1]: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1096727
>
> Here is an excerpt of the build log, obtained by Matthias Klose,
> on 2025-02-17:
>
> >     7 | typedef unsigned char bool;
> >       | ^~~~~~~
> > In file included from ../../src/gmap_select.c:1:
> > ../../src/bool.h:7:23: error: ‘bool’ cannot be defined via ‘typedef’
> >     7 | typedef unsigned char bool;
> >       |                       ^~~~
> > ../../src/bool.h:7:23: note: ‘bool’ is a keyword with ‘-std=c23’ onwards
> > ../../src/bool.h:7:1: warning: useless type name in empty declaration
> >     7 | typedef unsigned char bool;
> >       | ^~~~~~~
> > In file included from ../../src/cpuid.h:4,
> >                  from ../../src/cpuid.c:6:
>
> I took the liberty to have a look at mitigating the build
> failure and came up with a patch which you may find useful and
> you will find in attachment.
>
> Have a nice day,  :)
> --
>   .''`.  Étienne Mollier <emollier at debian.org>
>  : :' :  pgp: 8f91 b227 c7d6 f2b1 948c  8236 793c f67e 8f0d 11da
>  `. `'   sent from /dev/pts/0, please excuse my verbosity
>    `-
>
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