[Debian-med-packaging] Bug#1092522: bmtk: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.12 3.13" returned exit code 13

[Lucas Nussbaum]

Source: bmtk
Version: 1.1.1+ds-3
Severity: serious
Justification: FTBFS
Tags: trixie sid ftbfs
User: lucas at debian.org
Usertags: ftbfs-20250107 ftbfs-trixie

Hi,

During a rebuild of all packages in sid, your package failed to build
on amd64.


Relevant part (hopefully):
> make[1]: Entering directory '/build/reproducible-path/bmtk-1.1.1+ds'
> dh_auto_build
> I: pybuild base:311: /usr/bin/python3.12 setup.py build 
> /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require'
>   warnings.warn(msg)
> running build
> running build_py
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk
> copying bmtk/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/analyzer
> copying bmtk/analyzer/spikes_analyzer.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/analyzer
> copying bmtk/analyzer/firing_rates.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/analyzer
> copying bmtk/analyzer/utils.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/analyzer
> copying bmtk/analyzer/ecp.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/analyzer
> copying bmtk/analyzer/edges.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/analyzer
> copying bmtk/analyzer/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/analyzer
> copying bmtk/analyzer/compartment.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/analyzer
> copying bmtk/analyzer/spike_trains.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/analyzer
> copying bmtk/analyzer/io_tools.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/analyzer
> copying bmtk/analyzer/cell_vars.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/analyzer
> copying bmtk/analyzer/spikes_loader.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/analyzer
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils
> copying bmtk/utils/sim_setup.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils
> copying bmtk/utils/hdf5_helper.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils
> copying bmtk/utils/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils
> copying bmtk/utils/lazy_property.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder
> copying bmtk/builder/node_set.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder
> copying bmtk/builder/builder_utils.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder
> copying bmtk/builder/id_generator.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder
> copying bmtk/builder/network_builder.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder
> copying bmtk/builder/edge.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder
> copying bmtk/builder/networks.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder
> copying bmtk/builder/index_builders.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder
> copying bmtk/builder/node.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder
> copying bmtk/builder/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder
> copying bmtk/builder/connection_map.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder
> copying bmtk/builder/iterator.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder
> copying bmtk/builder/node_pool.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder
> copying bmtk/builder/connector.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder
> copying bmtk/builder/functor_cache.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator
> copying bmtk/simulator/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/sonata
> copying bmtk/utils/sonata/file.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/sonata
> copying bmtk/utils/sonata/utils.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/sonata
> copying bmtk/utils/sonata/edge.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/sonata
> copying bmtk/utils/sonata/population.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/sonata
> copying bmtk/utils/sonata/file_root.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/sonata
> copying bmtk/utils/sonata/column_property.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/sonata
> copying bmtk/utils/sonata/node.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/sonata
> copying bmtk/utils/sonata/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/sonata
> copying bmtk/utils/sonata/edge_stats.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/sonata
> copying bmtk/utils/sonata/types_table.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/sonata
> copying bmtk/utils/sonata/group.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/sonata
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/compile_mechanisms
> copying bmtk/utils/compile_mechanisms/compile_mechanisms.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/compile_mechanisms
> copying bmtk/utils/compile_mechanisms/__main__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/compile_mechanisms
> copying bmtk/utils/compile_mechanisms/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/compile_mechanisms
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/cell_types_db
> copying bmtk/utils/cell_types_db/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/cell_types_db
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/reports
> copying bmtk/utils/reports/current_writer.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/reports
> copying bmtk/utils/reports/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/reports
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/create_environment
> copying bmtk/utils/create_environment/create_environment.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/create_environment
> copying bmtk/utils/create_environment/env_builder.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/create_environment
> copying bmtk/utils/create_environment/__main__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/create_environment
> copying bmtk/utils/create_environment/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/create_environment
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/io
> copying bmtk/utils/io/firing_rates.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/io
> copying bmtk/utils/io/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/io
> copying bmtk/utils/io/spike_trains.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/io
> copying bmtk/utils/io/ioutils.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/io
> copying bmtk/utils/io/cell_vars.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/io
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/sonata/config
> copying bmtk/utils/sonata/config/sonata_config.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/sonata/config
> copying bmtk/utils/sonata/config/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/sonata/config
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/reports/spike_trains
> copying bmtk/utils/reports/spike_trains/spikes_file_writers.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/reports/spike_trains
> copying bmtk/utils/reports/spike_trains/spike_train_readers.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/reports/spike_trains
> copying bmtk/utils/reports/spike_trains/core.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/reports/spike_trains
> copying bmtk/utils/reports/spike_trains/spike_trains_api.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/reports/spike_trains
> copying bmtk/utils/reports/spike_trains/stats.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/reports/spike_trains
> copying bmtk/utils/reports/spike_trains/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/reports/spike_trains
> copying bmtk/utils/reports/spike_trains/spike_trains.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/reports/spike_trains
> copying bmtk/utils/reports/spike_trains/plotting.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/reports/spike_trains
> copying bmtk/utils/reports/spike_trains/spike_train_buffer.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/reports/spike_trains
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/reports/compartment
> copying bmtk/utils/reports/compartment/core.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/reports/compartment
> copying bmtk/utils/reports/compartment/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/reports/compartment
> copying bmtk/utils/reports/compartment/compartment_writer.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/reports/compartment
> copying bmtk/utils/reports/compartment/plotting.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/reports/compartment
> copying bmtk/utils/reports/compartment/compartment_report.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/reports/compartment
> copying bmtk/utils/reports/compartment/compartment_reader.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/reports/compartment
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder/network_adaptors
> copying bmtk/builder/network_adaptors/dm_network.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder/network_adaptors
> copying bmtk/builder/network_adaptors/edge_props_table.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder/network_adaptors
> copying bmtk/builder/network_adaptors/nxnetwork.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder/network_adaptors
> copying bmtk/builder/network_adaptors/network.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder/network_adaptors
> copying bmtk/builder/network_adaptors/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder/network_adaptors
> copying bmtk/builder/network_adaptors/dm_network_orig.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder/network_adaptors
> copying bmtk/builder/network_adaptors/edges_collator.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder/network_adaptors
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder/bionet
> copying bmtk/builder/bionet/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder/bionet
> copying bmtk/builder/bionet/swc_reader.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder/bionet
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder/edges_sorter
> copying bmtk/builder/edges_sorter/memory_sorter.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder/edges_sorter
> copying bmtk/builder/edges_sorter/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder/edges_sorter
> copying bmtk/builder/edges_sorter/merge_sorter.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder/edges_sorter
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder/auxi
> copying bmtk/builder/auxi/edge_connectors.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder/auxi
> copying bmtk/builder/auxi/node_params.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder/auxi
> copying bmtk/builder/auxi/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder/auxi
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet
> copying bmtk/simulator/pointnet/utils.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet
> copying bmtk/simulator/pointnet/pyfunction_cache.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet
> copying bmtk/simulator/pointnet/gids.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet
> copying bmtk/simulator/pointnet/nest_utils.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet
> copying bmtk/simulator/pointnet/config.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet
> copying bmtk/simulator/pointnet/property_map.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet
> copying bmtk/simulator/pointnet/sonata_adaptors.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet
> copying bmtk/simulator/pointnet/glif_utils.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet
> copying bmtk/simulator/pointnet/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet
> copying bmtk/simulator/pointnet/io_tools.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet
> copying bmtk/simulator/pointnet/pointnetwork.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet
> copying bmtk/simulator/pointnet/pointsimulator.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet
> copying bmtk/simulator/filternet/cell_models.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet
> copying bmtk/simulator/filternet/auditory_processing.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet
> copying bmtk/simulator/filternet/utils.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet
> copying bmtk/simulator/filternet/filtersimulator.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet
> copying bmtk/simulator/filternet/pyfunction_cache.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet
> copying bmtk/simulator/filternet/cell.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet
> copying bmtk/simulator/filternet/config.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet
> copying bmtk/simulator/filternet/filternetwork.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet
> copying bmtk/simulator/filternet/sonata_adaptors.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet
> copying bmtk/simulator/filternet/transfer_functions.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet
> copying bmtk/simulator/filternet/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet
> copying bmtk/simulator/filternet/filters.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet
> copying bmtk/simulator/filternet/io_tools.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/popnet
> copying bmtk/simulator/popnet/utils.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/popnet
> copying bmtk/simulator/popnet/popnetwork.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/popnet
> copying bmtk/simulator/popnet/popnode.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/popnet
> copying bmtk/simulator/popnet/config.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/popnet
> copying bmtk/simulator/popnet/popedge.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/popnet
> copying bmtk/simulator/popnet/sonata_adaptors.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/popnet
> copying bmtk/simulator/popnet/popsimulator.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/popnet
> copying bmtk/simulator/popnet/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/popnet
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/utils
> copying bmtk/simulator/utils/simulation_reports.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/utils
> copying bmtk/simulator/utils/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/utils
> copying bmtk/simulator/utils/simulation_inputs.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/utils
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/utils.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/iclamp.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/pyfunction_cache.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/gids.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/cell.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/config.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/seclamp.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/sonata_adaptors.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/nrn.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/morphology.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/bionetwork.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/virtualcell.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/io_tools.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/pointsomacell.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/biosimulator.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/pointprocesscell.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/biocell.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/nml_reader.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core
> copying bmtk/simulator/core/simulation_config_validator.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core
> copying bmtk/simulator/core/network_reader.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core
> copying bmtk/simulator/core/pyfunction_cache.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core
> copying bmtk/simulator/core/edge_population.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core
> copying bmtk/simulator/core/simulator.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core
> copying bmtk/simulator/core/simulator_network.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core
> copying bmtk/simulator/core/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core
> copying bmtk/simulator/core/simulation_config.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core
> copying bmtk/simulator/core/io_tools.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core
> copying bmtk/simulator/core/node_sets.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core
> copying bmtk/simulator/core/node_population.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core
> copying bmtk/simulator/core/graph.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet/modules
> copying bmtk/simulator/pointnet/modules/multimeter_reporter.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet/modules
> copying bmtk/simulator/pointnet/modules/spikes_inputs.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet/modules
> copying bmtk/simulator/pointnet/modules/iclamp.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet/modules
> copying bmtk/simulator/pointnet/modules/sim_module.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet/modules
> copying bmtk/simulator/pointnet/modules/ecephys_module.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet/modules
> copying bmtk/simulator/pointnet/modules/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet/modules
> copying bmtk/simulator/pointnet/modules/record_spikes.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet/modules
> copying bmtk/simulator/pointnet/modules/weight_recorder.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet/modules
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet/default_setters
> copying bmtk/simulator/pointnet/default_setters/cell_models.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet/default_setters
> copying bmtk/simulator/pointnet/default_setters/synapse_models.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet/default_setters
> copying bmtk/simulator/pointnet/default_setters/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet/default_setters
> copying bmtk/simulator/pointnet/default_setters/synaptic_weights.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet/default_setters
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/util_fns.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/cellmetrics.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/lnunit.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/cellmodel.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/singleunitcell.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/temporalfilter.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/linearfilter.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/lattice_unit_constructor.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/fitfuns.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/lgnmodel1.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/cursor.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/transferfunction.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/poissongeneration.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/kernel.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/movie.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/gaborfilter.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/utilities.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/waveletfilter.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/make_cell_list.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/spatialfilter.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/modules
> copying bmtk/simulator/filternet/modules/create_spikes.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/modules
> copying bmtk/simulator/filternet/modules/base.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/modules
> copying bmtk/simulator/filternet/modules/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/modules
> copying bmtk/simulator/filternet/modules/record_rates.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/modules
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/default_setters
> copying bmtk/simulator/filternet/default_setters/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/default_setters
> copying bmtk/simulator/filternet/default_setters/cell_loaders.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/default_setters
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/modules
> copying bmtk/simulator/bionet/modules/comsol.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/modules
> copying bmtk/simulator/bionet/modules/ecp.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/modules
> copying bmtk/simulator/bionet/modules/iclamp.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/modules
> copying bmtk/simulator/bionet/modules/seclamp.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/modules
> copying bmtk/simulator/bionet/modules/sim_module.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/modules
> copying bmtk/simulator/bionet/modules/xstim_waveforms.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/modules
> copying bmtk/simulator/bionet/modules/xstim.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/modules
> copying bmtk/simulator/bionet/modules/ecephys_module.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/modules
> copying bmtk/simulator/bionet/modules/record_netcons.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/modules
> copying bmtk/simulator/bionet/modules/record_clamp.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/modules
> copying bmtk/simulator/bionet/modules/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/modules
> copying bmtk/simulator/bionet/modules/record_spikes.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/modules
> copying bmtk/simulator/bionet/modules/record_cellvars.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/modules
> copying bmtk/simulator/bionet/modules/save_synapses.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/modules
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/default_setters
> copying bmtk/simulator/bionet/default_setters/cell_models.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/default_setters
> copying bmtk/simulator/bionet/default_setters/synapse_models.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/default_setters
> copying bmtk/simulator/bionet/default_setters/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/default_setters
> copying bmtk/simulator/bionet/default_setters/synaptic_weights.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/default_setters
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core/sonata_reader
> copying bmtk/simulator/core/sonata_reader/network_reader.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core/sonata_reader
> copying bmtk/simulator/core/sonata_reader/node_adaptor.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core/sonata_reader
> copying bmtk/simulator/core/sonata_reader/edge_adaptor.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core/sonata_reader
> copying bmtk/simulator/core/sonata_reader/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core/sonata_reader
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core/modules
> copying bmtk/simulator/core/modules/iclamp.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core/modules
> copying bmtk/simulator/core/modules/ecephys_module.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core/modules
> copying bmtk/simulator/core/modules/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core/modules
> copying bmtk/simulator/core/modules/simulator_module.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core/modules
> running egg_info
> creating bmtk.egg-info
> writing bmtk.egg-info/PKG-INFO
> writing dependency_links to bmtk.egg-info/dependency_links.txt
> writing requirements to bmtk.egg-info/requires.txt
> writing top-level names to bmtk.egg-info/top_level.txt
> writing manifest file 'bmtk.egg-info/SOURCES.txt'
> reading manifest file 'bmtk.egg-info/SOURCES.txt'
> reading manifest template 'MANIFEST.in'
> warning: no files found matching '*.txt' under directory 'bmtk'
> warning: no files found matching '*.cfg' under directory 'bmtk'
> adding license file 'LICENSE.txt'
> writing manifest file 'bmtk.egg-info/SOURCES.txt'
> /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.simulator.bionet.default_templates' is absent from the `packages` configuration.
> !!
> 
>         ********************************************************************************
>         ############################
>         # Package would be ignored #
>         ############################
>         Python recognizes 'bmtk.simulator.bionet.default_templates' as an importable package[^1],
>         but it is absent from setuptools' `packages` configuration.
> 
>         This leads to an ambiguous overall configuration. If you want to distribute this
>         package, please make sure that 'bmtk.simulator.bionet.default_templates' is explicitly added
>         to the `packages` configuration field.
> 
>         Alternatively, you can also rely on setuptools' discovery methods
>         (for example by using `find_namespace_packages(...)`/`find_namespace:`
>         instead of `find_packages(...)`/`find:`).
> 
>         You can read more about "package discovery" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
> 
>         If you don't want 'bmtk.simulator.bionet.default_templates' to be distributed and are
>         already explicitly excluding 'bmtk.simulator.bionet.default_templates' via
>         `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
>         you can try to use `exclude_package_data`, or `include-package-data=False` in
>         combination with a more fine grained `package-data` configuration.
> 
>         You can read more about "package data files" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/datafiles.html
> 
> 
>         [^1]: For Python, any directory (with suitable naming) can be imported,
>               even if it does not contain any `.py` files.
>               On the other hand, currently there is no concept of package data
>               directory, all directories are treated like packages.
>         ********************************************************************************
> 
> !!
>   check.warn(importable)
> /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.simulator.bionet.import3d' is absent from the `packages` configuration.
> !!
> 
>         ********************************************************************************
>         ############################
>         # Package would be ignored #
>         ############################
>         Python recognizes 'bmtk.simulator.bionet.import3d' as an importable package[^1],
>         but it is absent from setuptools' `packages` configuration.
> 
>         This leads to an ambiguous overall configuration. If you want to distribute this
>         package, please make sure that 'bmtk.simulator.bionet.import3d' is explicitly added
>         to the `packages` configuration field.
> 
>         Alternatively, you can also rely on setuptools' discovery methods
>         (for example by using `find_namespace_packages(...)`/`find_namespace:`
>         instead of `find_packages(...)`/`find:`).
> 
>         You can read more about "package discovery" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
> 
>         If you don't want 'bmtk.simulator.bionet.import3d' to be distributed and are
>         already explicitly excluding 'bmtk.simulator.bionet.import3d' via
>         `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
>         you can try to use `exclude_package_data`, or `include-package-data=False` in
>         combination with a more fine grained `package-data` configuration.
> 
>         You can read more about "package data files" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/datafiles.html
> 
> 
>         [^1]: For Python, any directory (with suitable naming) can be imported,
>               even if it does not contain any `.py` files.
>               On the other hand, currently there is no concept of package data
>               directory, all directories are treated like packages.
>         ********************************************************************************
> 
> !!
>   check.warn(importable)
> /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.simulator.bionet.schemas' is absent from the `packages` configuration.
> !!
> 
>         ********************************************************************************
>         ############################
>         # Package would be ignored #
>         ############################
>         Python recognizes 'bmtk.simulator.bionet.schemas' as an importable package[^1],
>         but it is absent from setuptools' `packages` configuration.
> 
>         This leads to an ambiguous overall configuration. If you want to distribute this
>         package, please make sure that 'bmtk.simulator.bionet.schemas' is explicitly added
>         to the `packages` configuration field.
> 
>         Alternatively, you can also rely on setuptools' discovery methods
>         (for example by using `find_namespace_packages(...)`/`find_namespace:`
>         instead of `find_packages(...)`/`find:`).
> 
>         You can read more about "package discovery" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
> 
>         If you don't want 'bmtk.simulator.bionet.schemas' to be distributed and are
>         already explicitly excluding 'bmtk.simulator.bionet.schemas' via
>         `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
>         you can try to use `exclude_package_data`, or `include-package-data=False` in
>         combination with a more fine grained `package-data` configuration.
> 
>         You can read more about "package data files" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/datafiles.html
> 
> 
>         [^1]: For Python, any directory (with suitable naming) can be imported,
>               even if it does not contain any `.py` files.
>               On the other hand, currently there is no concept of package data
>               directory, all directories are treated like packages.
>         ********************************************************************************
> 
> !!
>   check.warn(importable)
> /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.simulator.core.sonata_schemas' is absent from the `packages` configuration.
> !!
> 
>         ********************************************************************************
>         ############################
>         # Package would be ignored #
>         ############################
>         Python recognizes 'bmtk.simulator.core.sonata_schemas' as an importable package[^1],
>         but it is absent from setuptools' `packages` configuration.
> 
>         This leads to an ambiguous overall configuration. If you want to distribute this
>         package, please make sure that 'bmtk.simulator.core.sonata_schemas' is explicitly added
>         to the `packages` configuration field.
> 
>         Alternatively, you can also rely on setuptools' discovery methods
>         (for example by using `find_namespace_packages(...)`/`find_namespace:`
>         instead of `find_packages(...)`/`find:`).
> 
>         You can read more about "package discovery" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
> 
>         If you don't want 'bmtk.simulator.core.sonata_schemas' to be distributed and are
>         already explicitly excluding 'bmtk.simulator.core.sonata_schemas' via
>         `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
>         you can try to use `exclude_package_data`, or `include-package-data=False` in
>         combination with a more fine grained `package-data` configuration.
> 
>         You can read more about "package data files" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/datafiles.html
> 
> 
>         [^1]: For Python, any directory (with suitable naming) can be imported,
>               even if it does not contain any `.py` files.
>               On the other hand, currently there is no concept of package data
>               directory, all directories are treated like packages.
>         ********************************************************************************
> 
> !!
>   check.warn(importable)
> /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.simulator.filternet.lgnmodel.cell_metrics' is absent from the `packages` configuration.
> !!
> 
>         ********************************************************************************
>         ############################
>         # Package would be ignored #
>         ############################
>         Python recognizes 'bmtk.simulator.filternet.lgnmodel.cell_metrics' as an importable package[^1],
>         but it is absent from setuptools' `packages` configuration.
> 
>         This leads to an ambiguous overall configuration. If you want to distribute this
>         package, please make sure that 'bmtk.simulator.filternet.lgnmodel.cell_metrics' is explicitly added
>         to the `packages` configuration field.
> 
>         Alternatively, you can also rely on setuptools' discovery methods
>         (for example by using `find_namespace_packages(...)`/`find_namespace:`
>         instead of `find_packages(...)`/`find:`).
> 
>         You can read more about "package discovery" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
> 
>         If you don't want 'bmtk.simulator.filternet.lgnmodel.cell_metrics' to be distributed and are
>         already explicitly excluding 'bmtk.simulator.filternet.lgnmodel.cell_metrics' via
>         `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
>         you can try to use `exclude_package_data`, or `include-package-data=False` in
>         combination with a more fine grained `package-data` configuration.
> 
>         You can read more about "package data files" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/datafiles.html
> 
> 
>         [^1]: For Python, any directory (with suitable naming) can be imported,
>               even if it does not contain any `.py` files.
>               On the other hand, currently there is no concept of package data
>               directory, all directories are treated like packages.
>         ********************************************************************************
> 
> !!
>   check.warn(importable)
> /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts' is absent from the `packages` configuration.
> !!
> 
>         ********************************************************************************
>         ############################
>         # Package would be ignored #
>         ############################
>         Python recognizes 'bmtk.utils.scripts' as an importable package[^1],
>         but it is absent from setuptools' `packages` configuration.
> 
>         This leads to an ambiguous overall configuration. If you want to distribute this
>         package, please make sure that 'bmtk.utils.scripts' is explicitly added
>         to the `packages` configuration field.
> 
>         Alternatively, you can also rely on setuptools' discovery methods
>         (for example by using `find_namespace_packages(...)`/`find_namespace:`
>         instead of `find_packages(...)`/`find:`).
> 
>         You can read more about "package discovery" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
> 
>         If you don't want 'bmtk.utils.scripts' to be distributed and are
>         already explicitly excluding 'bmtk.utils.scripts' via
>         `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
>         you can try to use `exclude_package_data`, or `include-package-data=False` in
>         combination with a more fine grained `package-data` configuration.
> 
>         You can read more about "package data files" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/datafiles.html
> 
> 
>         [^1]: For Python, any directory (with suitable naming) can be imported,
>               even if it does not contain any `.py` files.
>               On the other hand, currently there is no concept of package data
>               directory, all directories are treated like packages.
>         ********************************************************************************
> 
> !!
>   check.warn(importable)
> /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.bionet' is absent from the `packages` configuration.
> !!
> 
>         ********************************************************************************
>         ############################
>         # Package would be ignored #
>         ############################
>         Python recognizes 'bmtk.utils.scripts.bionet' as an importable package[^1],
>         but it is absent from setuptools' `packages` configuration.
> 
>         This leads to an ambiguous overall configuration. If you want to distribute this
>         package, please make sure that 'bmtk.utils.scripts.bionet' is explicitly added
>         to the `packages` configuration field.
> 
>         Alternatively, you can also rely on setuptools' discovery methods
>         (for example by using `find_namespace_packages(...)`/`find_namespace:`
>         instead of `find_packages(...)`/`find:`).
> 
>         You can read more about "package discovery" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
> 
>         If you don't want 'bmtk.utils.scripts.bionet' to be distributed and are
>         already explicitly excluding 'bmtk.utils.scripts.bionet' via
>         `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
>         you can try to use `exclude_package_data`, or `include-package-data=False` in
>         combination with a more fine grained `package-data` configuration.
> 
>         You can read more about "package data files" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/datafiles.html
> 
> 
>         [^1]: For Python, any directory (with suitable naming) can be imported,
>               even if it does not contain any `.py` files.
>               On the other hand, currently there is no concept of package data
>               directory, all directories are treated like packages.
>         ********************************************************************************
> 
> !!
>   check.warn(importable)
> /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.bionet.biophysical_neuron_models' is absent from the `packages` configuration.
> !!
> 
>         ********************************************************************************
>         ############################
>         # Package would be ignored #
>         ############################
>         Python recognizes 'bmtk.utils.scripts.bionet.biophysical_neuron_models' as an importable package[^1],
>         but it is absent from setuptools' `packages` configuration.
> 
>         This leads to an ambiguous overall configuration. If you want to distribute this
>         package, please make sure that 'bmtk.utils.scripts.bionet.biophysical_neuron_models' is explicitly added
>         to the `packages` configuration field.
> 
>         Alternatively, you can also rely on setuptools' discovery methods
>         (for example by using `find_namespace_packages(...)`/`find_namespace:`
>         instead of `find_packages(...)`/`find:`).
> 
>         You can read more about "package discovery" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
> 
>         If you don't want 'bmtk.utils.scripts.bionet.biophysical_neuron_models' to be distributed and are
>         already explicitly excluding 'bmtk.utils.scripts.bionet.biophysical_neuron_models' via
>         `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
>         you can try to use `exclude_package_data`, or `include-package-data=False` in
>         combination with a more fine grained `package-data` configuration.
> 
>         You can read more about "package data files" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/datafiles.html
> 
> 
>         [^1]: For Python, any directory (with suitable naming) can be imported,
>               even if it does not contain any `.py` files.
>               On the other hand, currently there is no concept of package data
>               directory, all directories are treated like packages.
>         ********************************************************************************
> 
> !!
>   check.warn(importable)
> /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.bionet.filter_models' is absent from the `packages` configuration.
> !!
> 
>         ********************************************************************************
>         ############################
>         # Package would be ignored #
>         ############################
>         Python recognizes 'bmtk.utils.scripts.bionet.filter_models' as an importable package[^1],
>         but it is absent from setuptools' `packages` configuration.
> 
>         This leads to an ambiguous overall configuration. If you want to distribute this
>         package, please make sure that 'bmtk.utils.scripts.bionet.filter_models' is explicitly added
>         to the `packages` configuration field.
> 
>         Alternatively, you can also rely on setuptools' discovery methods
>         (for example by using `find_namespace_packages(...)`/`find_namespace:`
>         instead of `find_packages(...)`/`find:`).
> 
>         You can read more about "package discovery" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
> 
>         If you don't want 'bmtk.utils.scripts.bionet.filter_models' to be distributed and are
>         already explicitly excluding 'bmtk.utils.scripts.bionet.filter_models' via
>         `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
>         you can try to use `exclude_package_data`, or `include-package-data=False` in
>         combination with a more fine grained `package-data` configuration.
> 
>         You can read more about "package data files" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/datafiles.html
> 
> 
>         [^1]: For Python, any directory (with suitable naming) can be imported,
>               even if it does not contain any `.py` files.
>               On the other hand, currently there is no concept of package data
>               directory, all directories are treated like packages.
>         ********************************************************************************
> 
> !!
>   check.warn(importable)
> /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.bionet.mechanisms.modfiles' is absent from the `packages` configuration.
> !!
> 
>         ********************************************************************************
>         ############################
>         # Package would be ignored #
>         ############################
>         Python recognizes 'bmtk.utils.scripts.bionet.mechanisms.modfiles' as an importable package[^1],
>         but it is absent from setuptools' `packages` configuration.
> 
>         This leads to an ambiguous overall configuration. If you want to distribute this
>         package, please make sure that 'bmtk.utils.scripts.bionet.mechanisms.modfiles' is explicitly added
>         to the `packages` configuration field.
> 
>         Alternatively, you can also rely on setuptools' discovery methods
>         (for example by using `find_namespace_packages(...)`/`find_namespace:`
>         instead of `find_packages(...)`/`find:`).
> 
>         You can read more about "package discovery" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
> 
>         If you don't want 'bmtk.utils.scripts.bionet.mechanisms.modfiles' to be distributed and are
>         already explicitly excluding 'bmtk.utils.scripts.bionet.mechanisms.modfiles' via
>         `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
>         you can try to use `exclude_package_data`, or `include-package-data=False` in
>         combination with a more fine grained `package-data` configuration.
> 
>         You can read more about "package data files" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/datafiles.html
> 
> 
>         [^1]: For Python, any directory (with suitable naming) can be imported,
>               even if it does not contain any `.py` files.
>               On the other hand, currently there is no concept of package data
>               directory, all directories are treated like packages.
>         ********************************************************************************
> 
> !!
>   check.warn(importable)
> /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.bionet.morphologies' is absent from the `packages` configuration.
> !!
> 
>         ********************************************************************************
>         ############################
>         # Package would be ignored #
>         ############################
>         Python recognizes 'bmtk.utils.scripts.bionet.morphologies' as an importable package[^1],
>         but it is absent from setuptools' `packages` configuration.
> 
>         This leads to an ambiguous overall configuration. If you want to distribute this
>         package, please make sure that 'bmtk.utils.scripts.bionet.morphologies' is explicitly added
>         to the `packages` configuration field.
> 
>         Alternatively, you can also rely on setuptools' discovery methods
>         (for example by using `find_namespace_packages(...)`/`find_namespace:`
>         instead of `find_packages(...)`/`find:`).
> 
>         You can read more about "package discovery" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
> 
>         If you don't want 'bmtk.utils.scripts.bionet.morphologies' to be distributed and are
>         already explicitly excluding 'bmtk.utils.scripts.bionet.morphologies' via
>         `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
>         you can try to use `exclude_package_data`, or `include-package-data=False` in
>         combination with a more fine grained `package-data` configuration.
> 
>         You can read more about "package data files" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/datafiles.html
> 
> 
>         [^1]: For Python, any directory (with suitable naming) can be imported,
>               even if it does not contain any `.py` files.
>               On the other hand, currently there is no concept of package data
>               directory, all directories are treated like packages.
>         ********************************************************************************
> 
> !!
>   check.warn(importable)
> /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.bionet.point_neuron_models' is absent from the `packages` configuration.
> !!
> 
>         ********************************************************************************
>         ############################
>         # Package would be ignored #
>         ############################
>         Python recognizes 'bmtk.utils.scripts.bionet.point_neuron_models' as an importable package[^1],
>         but it is absent from setuptools' `packages` configuration.
> 
>         This leads to an ambiguous overall configuration. If you want to distribute this
>         package, please make sure that 'bmtk.utils.scripts.bionet.point_neuron_models' is explicitly added
>         to the `packages` configuration field.
> 
>         Alternatively, you can also rely on setuptools' discovery methods
>         (for example by using `find_namespace_packages(...)`/`find_namespace:`
>         instead of `find_packages(...)`/`find:`).
> 
>         You can read more about "package discovery" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
> 
>         If you don't want 'bmtk.utils.scripts.bionet.point_neuron_models' to be distributed and are
>         already explicitly excluding 'bmtk.utils.scripts.bionet.point_neuron_models' via
>         `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
>         you can try to use `exclude_package_data`, or `include-package-data=False` in
>         combination with a more fine grained `package-data` configuration.
> 
>         You can read more about "package data files" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/datafiles.html
> 
> 
>         [^1]: For Python, any directory (with suitable naming) can be imported,
>               even if it does not contain any `.py` files.
>               On the other hand, currently there is no concept of package data
>               directory, all directories are treated like packages.
>         ********************************************************************************
> 
> !!
>   check.warn(importable)
> /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.bionet.synaptic_models' is absent from the `packages` configuration.
> !!
> 
>         ********************************************************************************
>         ############################
>         # Package would be ignored #
>         ############################
>         Python recognizes 'bmtk.utils.scripts.bionet.synaptic_models' as an importable package[^1],
>         but it is absent from setuptools' `packages` configuration.
> 
>         This leads to an ambiguous overall configuration. If you want to distribute this
>         package, please make sure that 'bmtk.utils.scripts.bionet.synaptic_models' is explicitly added
>         to the `packages` configuration field.
> 
>         Alternatively, you can also rely on setuptools' discovery methods
>         (for example by using `find_namespace_packages(...)`/`find_namespace:`
>         instead of `find_packages(...)`/`find:`).
> 
>         You can read more about "package discovery" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
> 
>         If you don't want 'bmtk.utils.scripts.bionet.synaptic_models' to be distributed and are
>         already explicitly excluding 'bmtk.utils.scripts.bionet.synaptic_models' via
>         `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
>         you can try to use `exclude_package_data`, or `include-package-data=False` in
>         combination with a more fine grained `package-data` configuration.
> 
>         You can read more about "package data files" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/datafiles.html
> 
> 
>         [^1]: For Python, any directory (with suitable naming) can be imported,
>               even if it does not contain any `.py` files.
>               On the other hand, currently there is no concept of package data
>               directory, all directories are treated like packages.
>         ********************************************************************************
> 
> !!
>   check.warn(importable)
> /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.bionet.templates' is absent from the `packages` configuration.
> !!
> 
>         ********************************************************************************
>         ############################
>         # Package would be ignored #
>         ############################
>         Python recognizes 'bmtk.utils.scripts.bionet.templates' as an importable package[^1],
>         but it is absent from setuptools' `packages` configuration.
> 
>         This leads to an ambiguous overall configuration. If you want to distribute this
>         package, please make sure that 'bmtk.utils.scripts.bionet.templates' is explicitly added
>         to the `packages` configuration field.
> 
>         Alternatively, you can also rely on setuptools' discovery methods
>         (for example by using `find_namespace_packages(...)`/`find_namespace:`
>         instead of `find_packages(...)`/`find:`).
> 
>         You can read more about "package discovery" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
> 
>         If you don't want 'bmtk.utils.scripts.bionet.templates' to be distributed and are
>         already explicitly excluding 'bmtk.utils.scripts.bionet.templates' via
>         `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
>         you can try to use `exclude_package_data`, or `include-package-data=False` in
>         combination with a more fine grained `package-data` configuration.
> 
>         You can read more about "package data files" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/datafiles.html
> 
> 
>         [^1]: For Python, any directory (with suitable naming) can be imported,
>               even if it does not contain any `.py` files.
>               On the other hand, currently there is no concept of package data
>               directory, all directories are treated like packages.
>         ********************************************************************************
> 
> !!
>   check.warn(importable)
> /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.filternet' is absent from the `packages` configuration.
> !!
> 
>         ********************************************************************************
>         ############################
>         # Package would be ignored #
>         ############################
>         Python recognizes 'bmtk.utils.scripts.filternet' as an importable package[^1],
>         but it is absent from setuptools' `packages` configuration.
> 
>         This leads to an ambiguous overall configuration. If you want to distribute this
>         package, please make sure that 'bmtk.utils.scripts.filternet' is explicitly added
>         to the `packages` configuration field.
> 
>         Alternatively, you can also rely on setuptools' discovery methods
>         (for example by using `find_namespace_packages(...)`/`find_namespace:`
>         instead of `find_packages(...)`/`find:`).
> 
>         You can read more about "package discovery" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
> 
>         If you don't want 'bmtk.utils.scripts.filternet' to be distributed and are
>         already explicitly excluding 'bmtk.utils.scripts.filternet' via
>         `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
>         you can try to use `exclude_package_data`, or `include-package-data=False` in
>         combination with a more fine grained `package-data` configuration.
> 
>         You can read more about "package data files" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/datafiles.html
> 
> 
>         [^1]: For Python, any directory (with suitable naming) can be imported,
>               even if it does not contain any `.py` files.
>               On the other hand, currently there is no concept of package data
>               directory, all directories are treated like packages.
>         ********************************************************************************
> 
> !!
>   check.warn(importable)
> /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.filternet.filter_models' is absent from the `packages` configuration.
> !!
> 
>         ********************************************************************************
>         ############################
>         # Package would be ignored #
>         ############################
>         Python recognizes 'bmtk.utils.scripts.filternet.filter_models' as an importable package[^1],
>         but it is absent from setuptools' `packages` configuration.
> 
>         This leads to an ambiguous overall configuration. If you want to distribute this
>         package, please make sure that 'bmtk.utils.scripts.filternet.filter_models' is explicitly added
>         to the `packages` configuration field.
> 
>         Alternatively, you can also rely on setuptools' discovery methods
>         (for example by using `find_namespace_packages(...)`/`find_namespace:`
>         instead of `find_packages(...)`/`find:`).
> 
>         You can read more about "package discovery" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
> 
>         If you don't want 'bmtk.utils.scripts.filternet.filter_models' to be distributed and are
>         already explicitly excluding 'bmtk.utils.scripts.filternet.filter_models' via
>         `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
>         you can try to use `exclude_package_data`, or `include-package-data=False` in
>         combination with a more fine grained `package-data` configuration.
> 
>         You can read more about "package data files" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/datafiles.html
> 
> 
>         [^1]: For Python, any directory (with suitable naming) can be imported,
>               even if it does not contain any `.py` files.
>               On the other hand, currently there is no concept of package data
>               directory, all directories are treated like packages.
>         ********************************************************************************
> 
> !!
>   check.warn(importable)
> /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.pointnet' is absent from the `packages` configuration.
> !!
> 
>         ********************************************************************************
>         ############################
>         # Package would be ignored #
>         ############################
>         Python recognizes 'bmtk.utils.scripts.pointnet' as an importable package[^1],
>         but it is absent from setuptools' `packages` configuration.
> 
>         This leads to an ambiguous overall configuration. If you want to distribute this
>         package, please make sure that 'bmtk.utils.scripts.pointnet' is explicitly added
>         to the `packages` configuration field.
> 
>         Alternatively, you can also rely on setuptools' discovery methods
>         (for example by using `find_namespace_packages(...)`/`find_namespace:`
>         instead of `find_packages(...)`/`find:`).
> 
>         You can read more about "package discovery" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
> 
>         If you don't want 'bmtk.utils.scripts.pointnet' to be distributed and are
>         already explicitly excluding 'bmtk.utils.scripts.pointnet' via
>         `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
>         you can try to use `exclude_package_data`, or `include-package-data=False` in
>         combination with a more fine grained `package-data` configuration.
> 
>         You can read more about "package data files" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/datafiles.html
> 
> 
>         [^1]: For Python, any directory (with suitable naming) can be imported,
>               even if it does not contain any `.py` files.
>               On the other hand, currently there is no concept of package data
>               directory, all directories are treated like packages.
>         ********************************************************************************
> 
> !!
>   check.warn(importable)
> /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.pointnet.filter_models' is absent from the `packages` configuration.
> !!
> 
>         ********************************************************************************
>         ############################
>         # Package would be ignored #
>         ############################
>         Python recognizes 'bmtk.utils.scripts.pointnet.filter_models' as an importable package[^1],
>         but it is absent from setuptools' `packages` configuration.
> 
>         This leads to an ambiguous overall configuration. If you want to distribute this
>         package, please make sure that 'bmtk.utils.scripts.pointnet.filter_models' is explicitly added
>         to the `packages` configuration field.
> 
>         Alternatively, you can also rely on setuptools' discovery methods
>         (for example by using `find_namespace_packages(...)`/`find_namespace:`
>         instead of `find_packages(...)`/`find:`).
> 
>         You can read more about "package discovery" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
> 
>         If you don't want 'bmtk.utils.scripts.pointnet.filter_models' to be distributed and are
>         already explicitly excluding 'bmtk.utils.scripts.pointnet.filter_models' via
>         `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
>         you can try to use `exclude_package_data`, or `include-package-data=False` in
>         combination with a more fine grained `package-data` configuration.
> 
>         You can read more about "package data files" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/datafiles.html
> 
> 
>         [^1]: For Python, any directory (with suitable naming) can be imported,
>               even if it does not contain any `.py` files.
>               On the other hand, currently there is no concept of package data
>               directory, all directories are treated like packages.
>         ********************************************************************************
> 
> !!
>   check.warn(importable)
> /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.pointnet.point_neuron_models' is absent from the `packages` configuration.
> !!
> 
>         ********************************************************************************
>         ############################
>         # Package would be ignored #
>         ############################
>         Python recognizes 'bmtk.utils.scripts.pointnet.point_neuron_models' as an importable package[^1],
>         but it is absent from setuptools' `packages` configuration.
> 
>         This leads to an ambiguous overall configuration. If you want to distribute this
>         package, please make sure that 'bmtk.utils.scripts.pointnet.point_neuron_models' is explicitly added
>         to the `packages` configuration field.
> 
>         Alternatively, you can also rely on setuptools' discovery methods
>         (for example by using `find_namespace_packages(...)`/`find_namespace:`
>         instead of `find_packages(...)`/`find:`).
> 
>         You can read more about "package discovery" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
> 
>         If you don't want 'bmtk.utils.scripts.pointnet.point_neuron_models' to be distributed and are
>         already explicitly excluding 'bmtk.utils.scripts.pointnet.point_neuron_models' via
>         `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
>         you can try to use `exclude_package_data`, or `include-package-data=False` in
>         combination with a more fine grained `package-data` configuration.
> 
>         You can read more about "package data files" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/datafiles.html
> 
> 
>         [^1]: For Python, any directory (with suitable naming) can be imported,
>               even if it does not contain any `.py` files.
>               On the other hand, currently there is no concept of package data
>               directory, all directories are treated like packages.
>         ********************************************************************************
> 
> !!
>   check.warn(importable)
> /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.pointnet.synaptic_models' is absent from the `packages` configuration.
> !!
> 
>         ********************************************************************************
>         ############################
>         # Package would be ignored #
>         ############################
>         Python recognizes 'bmtk.utils.scripts.pointnet.synaptic_models' as an importable package[^1],
>         but it is absent from setuptools' `packages` configuration.
> 
>         This leads to an ambiguous overall configuration. If you want to distribute this
>         package, please make sure that 'bmtk.utils.scripts.pointnet.synaptic_models' is explicitly added
>         to the `packages` configuration field.
> 
>         Alternatively, you can also rely on setuptools' discovery methods
>         (for example by using `find_namespace_packages(...)`/`find_namespace:`
>         instead of `find_packages(...)`/`find:`).
> 
>         You can read more about "package discovery" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
> 
>         If you don't want 'bmtk.utils.scripts.pointnet.synaptic_models' to be distributed and are
>         already explicitly excluding 'bmtk.utils.scripts.pointnet.synaptic_models' via
>         `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
>         you can try to use `exclude_package_data`, or `include-package-data=False` in
>         combination with a more fine grained `package-data` configuration.
> 
>         You can read more about "package data files" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/datafiles.html
> 
> 
>         [^1]: For Python, any directory (with suitable naming) can be imported,
>               even if it does not contain any `.py` files.
>               On the other hand, currently there is no concept of package data
>               directory, all directories are treated like packages.
>         ********************************************************************************
> 
> !!
>   check.warn(importable)
> /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.popnet' is absent from the `packages` configuration.
> !!
> 
>         ********************************************************************************
>         ############################
>         # Package would be ignored #
>         ############################
>         Python recognizes 'bmtk.utils.scripts.popnet' as an importable package[^1],
>         but it is absent from setuptools' `packages` configuration.
> 
>         This leads to an ambiguous overall configuration. If you want to distribute this
>         package, please make sure that 'bmtk.utils.scripts.popnet' is explicitly added
>         to the `packages` configuration field.
> 
>         Alternatively, you can also rely on setuptools' discovery methods
>         (for example by using `find_namespace_packages(...)`/`find_namespace:`
>         instead of `find_packages(...)`/`find:`).
> 
>         You can read more about "package discovery" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
> 
>         If you don't want 'bmtk.utils.scripts.popnet' to be distributed and are
>         already explicitly excluding 'bmtk.utils.scripts.popnet' via
>         `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
>         you can try to use `exclude_package_data`, or `include-package-data=False` in
>         combination with a more fine grained `package-data` configuration.
> 
>         You can read more about "package data files" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/datafiles.html
> 
> 
>         [^1]: For Python, any directory (with suitable naming) can be imported,
>               even if it does not contain any `.py` files.
>               On the other hand, currently there is no concept of package data
>               directory, all directories are treated like packages.
>         ********************************************************************************
> 
> !!
>   check.warn(importable)
> /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.popnet.population_models' is absent from the `packages` configuration.
> !!
> 
>         ********************************************************************************
>         ############################
>         # Package would be ignored #
>         ############################
>         Python recognizes 'bmtk.utils.scripts.popnet.population_models' as an importable package[^1],
>         but it is absent from setuptools' `packages` configuration.
> 
>         This leads to an ambiguous overall configuration. If you want to distribute this
>         package, please make sure that 'bmtk.utils.scripts.popnet.population_models' is explicitly added
>         to the `packages` configuration field.
> 
>         Alternatively, you can also rely on setuptools' discovery methods
>         (for example by using `find_namespace_packages(...)`/`find_namespace:`
>         instead of `find_packages(...)`/`find:`).
> 
>         You can read more about "package discovery" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
> 
>         If you don't want 'bmtk.utils.scripts.popnet.population_models' to be distributed and are
>         already explicitly excluding 'bmtk.utils.scripts.popnet.population_models' via
>         `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
>         you can try to use `exclude_package_data`, or `include-package-data=False` in
>         combination with a more fine grained `package-data` configuration.
> 
>         You can read more about "package data files" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/datafiles.html
> 
> 
>         [^1]: For Python, any directory (with suitable naming) can be imported,
>               even if it does not contain any `.py` files.
>               On the other hand, currently there is no concept of package data
>               directory, all directories are treated like packages.
>         ********************************************************************************
> 
> !!
>   check.warn(importable)
> /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.popnet.synaptic_models' is absent from the `packages` configuration.
> !!
> 
>         ********************************************************************************
>         ############################
>         # Package would be ignored #
>         ############################
>         Python recognizes 'bmtk.utils.scripts.popnet.synaptic_models' as an importable package[^1],
>         but it is absent from setuptools' `packages` configuration.
> 
>         This leads to an ambiguous overall configuration. If you want to distribute this
>         package, please make sure that 'bmtk.utils.scripts.popnet.synaptic_models' is explicitly added
>         to the `packages` configuration field.
> 
>         Alternatively, you can also rely on setuptools' discovery methods
>         (for example by using `find_namespace_packages(...)`/`find_namespace:`
>         instead of `find_packages(...)`/`find:`).
> 
>         You can read more about "package discovery" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
> 
>         If you don't want 'bmtk.utils.scripts.popnet.synaptic_models' to be distributed and are
>         already explicitly excluding 'bmtk.utils.scripts.popnet.synaptic_models' via
>         `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
>         you can try to use `exclude_package_data`, or `include-package-data=False` in
>         combination with a more fine grained `package-data` configuration.
> 
>         You can read more about "package data files" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/datafiles.html
> 
> 
>         [^1]: For Python, any directory (with suitable naming) can be imported,
>               even if it does not contain any `.py` files.
>               On the other hand, currently there is no concept of package data
>               directory, all directories are treated like packages.
>         ********************************************************************************
> 
> !!
>   check.warn(importable)
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts
> copying bmtk/utils/scripts/sonata.circuit_config.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts
> copying bmtk/utils/scripts/sonata.simulation_config.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet
> copying bmtk/utils/scripts/bionet/default_config.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet
> copying bmtk/utils/scripts/bionet/run_bionet.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/biophysical_neuron_models
> copying bmtk/utils/scripts/bionet/biophysical_neuron_models/318331342_fit.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/biophysical_neuron_models
> copying bmtk/utils/scripts/bionet/biophysical_neuron_models/472363762_fit.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/biophysical_neuron_models
> copying bmtk/utils/scripts/bionet/biophysical_neuron_models/472912177_fit.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/biophysical_neuron_models
> copying bmtk/utils/scripts/bionet/biophysical_neuron_models/473862421_fit.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/biophysical_neuron_models
> copying bmtk/utils/scripts/bionet/biophysical_neuron_models/473863035_fit.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/biophysical_neuron_models
> copying bmtk/utils/scripts/bionet/biophysical_neuron_models/473863510_fit.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/biophysical_neuron_models
> copying bmtk/utils/scripts/bionet/biophysical_neuron_models/485184849_fit.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/biophysical_neuron_models
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/filter_models
> copying bmtk/utils/scripts/bionet/filter_models/sOFF_TF1.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/filter_models
> copying bmtk/utils/scripts/bionet/filter_models/sOFF_TF15.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/filter_models
> copying bmtk/utils/scripts/bionet/filter_models/sOFF_TF2.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/filter_models
> copying bmtk/utils/scripts/bionet/filter_models/sOFF_TF4.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/filter_models
> copying bmtk/utils/scripts/bionet/filter_models/sOFF_TF8.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/filter_models
> copying bmtk/utils/scripts/bionet/filter_models/sON_TF1.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/filter_models
> copying bmtk/utils/scripts/bionet/filter_models/sON_TF2.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/filter_models
> copying bmtk/utils/scripts/bionet/filter_models/sON_TF4.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/filter_models
> copying bmtk/utils/scripts/bionet/filter_models/sON_TF8.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/filter_models
> copying bmtk/utils/scripts/bionet/filter_models/tOFF_TF15.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/filter_models
> copying bmtk/utils/scripts/bionet/filter_models/tOFF_TF4.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/filter_models
> copying bmtk/utils/scripts/bionet/filter_models/tOFF_TF8.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/filter_models
> copying bmtk/utils/scripts/bionet/filter_models/tON_TF15.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/filter_models
> copying bmtk/utils/scripts/bionet/filter_models/tON_TF4.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/filter_models
> copying bmtk/utils/scripts/bionet/filter_models/tON_TF8.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/filter_models
> copying bmtk/utils/scripts/bionet/filter_models/tON_TF8_demo.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/filter_models
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/CaDynamics.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Ca_HVA.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Ca_LVA.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Ih.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Im.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Im_v2.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/K_P.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/K_T.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Kd.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Kv2like.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Kv3_1.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/NaTa.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/NaTs.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/NaV.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Nap.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/SK.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/vecevent.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/morphologies
> copying bmtk/utils/scripts/bionet/morphologies/Nr5a1_471087815_m.swc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/morphologies
> copying bmtk/utils/scripts/bionet/morphologies/Pvalb_469628681_m.swc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/morphologies
> copying bmtk/utils/scripts/bionet/morphologies/Pvalb_470522102_m.swc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/morphologies
> copying bmtk/utils/scripts/bionet/morphologies/Rorb_325404214_m.swc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/morphologies
> copying bmtk/utils/scripts/bionet/morphologies/Scnn1a_473845048_m.swc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/morphologies
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/point_neuron_models
> copying bmtk/utils/scripts/bionet/point_neuron_models/IntFire1_exc_1.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/point_neuron_models
> copying bmtk/utils/scripts/bionet/point_neuron_models/IntFire1_inh_1.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/point_neuron_models
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/synaptic_models
> copying bmtk/utils/scripts/bionet/synaptic_models/AMPA_ExcToExc.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/synaptic_models
> copying bmtk/utils/scripts/bionet/synaptic_models/AMPA_ExcToInh.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/synaptic_models
> copying bmtk/utils/scripts/bionet/synaptic_models/GABA_InhToExc.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/synaptic_models
> copying bmtk/utils/scripts/bionet/synaptic_models/GABA_InhToInh.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/synaptic_models
> copying bmtk/utils/scripts/bionet/synaptic_models/instantaneousExc.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/synaptic_models
> copying bmtk/utils/scripts/bionet/synaptic_models/instantaneousInh.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/synaptic_models
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/templates
> copying bmtk/utils/scripts/bionet/templates/BioAllen_old.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/templates
> copying bmtk/utils/scripts/bionet/templates/BioAxonStub.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/templates
> copying bmtk/utils/scripts/bionet/templates/Biophys1.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/templates
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/filternet
> copying bmtk/utils/scripts/filternet/run_filternet.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/filternet
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/filternet/filter_models
> copying bmtk/utils/scripts/filternet/filter_models/sOFF_TF1.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/filternet/filter_models
> copying bmtk/utils/scripts/filternet/filter_models/sOFF_TF15.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/filternet/filter_models
> copying bmtk/utils/scripts/filternet/filter_models/sOFF_TF2.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/filternet/filter_models
> copying bmtk/utils/scripts/filternet/filter_models/sOFF_TF4.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/filternet/filter_models
> copying bmtk/utils/scripts/filternet/filter_models/sOFF_TF8.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/filternet/filter_models
> copying bmtk/utils/scripts/filternet/filter_models/sON_TF1.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/filternet/filter_models
> copying bmtk/utils/scripts/filternet/filter_models/sON_TF2.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/filternet/filter_models
> copying bmtk/utils/scripts/filternet/filter_models/sON_TF4.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/filternet/filter_models
> copying bmtk/utils/scripts/filternet/filter_models/sON_TF8.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/filternet/filter_models
> copying bmtk/utils/scripts/filternet/filter_models/tOFF_TF15.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/filternet/filter_models
> copying bmtk/utils/scripts/filternet/filter_models/tOFF_TF4.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/filternet/filter_models
> copying bmtk/utils/scripts/filternet/filter_models/tOFF_TF8.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/filternet/filter_models
> copying bmtk/utils/scripts/filternet/filter_models/tON_TF15.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/filternet/filter_models
> copying bmtk/utils/scripts/filternet/filter_models/tON_TF4.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/filternet/filter_models
> copying bmtk/utils/scripts/filternet/filter_models/tON_TF8.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/filternet/filter_models
> copying bmtk/utils/scripts/filternet/filter_models/tON_TF8_demo.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/filternet/filter_models
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet
> copying bmtk/utils/scripts/pointnet/run_pointnet.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/filter_models
> copying bmtk/utils/scripts/pointnet/filter_models/sOFF_TF1.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/filter_models
> copying bmtk/utils/scripts/pointnet/filter_models/sOFF_TF15.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/filter_models
> copying bmtk/utils/scripts/pointnet/filter_models/sOFF_TF2.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/filter_models
> copying bmtk/utils/scripts/pointnet/filter_models/sOFF_TF4.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/filter_models
> copying bmtk/utils/scripts/pointnet/filter_models/sOFF_TF8.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/filter_models
> copying bmtk/utils/scripts/pointnet/filter_models/sON_TF1.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/filter_models
> copying bmtk/utils/scripts/pointnet/filter_models/sON_TF2.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/filter_models
> copying bmtk/utils/scripts/pointnet/filter_models/sON_TF4.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/filter_models
> copying bmtk/utils/scripts/pointnet/filter_models/sON_TF8.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/filter_models
> copying bmtk/utils/scripts/pointnet/filter_models/tOFF_TF15.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/filter_models
> copying bmtk/utils/scripts/pointnet/filter_models/tOFF_TF4.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/filter_models
> copying bmtk/utils/scripts/pointnet/filter_models/tOFF_TF8.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/filter_models
> copying bmtk/utils/scripts/pointnet/filter_models/tON_TF15.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/filter_models
> copying bmtk/utils/scripts/pointnet/filter_models/tON_TF4.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/filter_models
> copying bmtk/utils/scripts/pointnet/filter_models/tON_TF8.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/filter_models
> copying bmtk/utils/scripts/pointnet/filter_models/tON_TF8_demo.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/filter_models
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/point_neuron_models
> copying bmtk/utils/scripts/pointnet/point_neuron_models/472363762_point.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/point_neuron_models
> copying bmtk/utils/scripts/pointnet/point_neuron_models/472912177_point.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/point_neuron_models
> copying bmtk/utils/scripts/pointnet/point_neuron_models/473862421_point.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/point_neuron_models
> copying bmtk/utils/scripts/pointnet/point_neuron_models/473863035_point.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/point_neuron_models
> copying bmtk/utils/scripts/pointnet/point_neuron_models/473863510_point.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/point_neuron_models
> copying bmtk/utils/scripts/pointnet/point_neuron_models/IntFire1_exc_point.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/point_neuron_models
> copying bmtk/utils/scripts/pointnet/point_neuron_models/IntFire1_inh_point.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/point_neuron_models
> copying bmtk/utils/scripts/pointnet/point_neuron_models/filter_point.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/point_neuron_models
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/synaptic_models
> copying bmtk/utils/scripts/pointnet/synaptic_models/ExcToExc.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/synaptic_models
> copying bmtk/utils/scripts/pointnet/synaptic_models/ExcToInh.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/synaptic_models
> copying bmtk/utils/scripts/pointnet/synaptic_models/InhToExc.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/synaptic_models
> copying bmtk/utils/scripts/pointnet/synaptic_models/InhToInh.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/synaptic_models
> copying bmtk/utils/scripts/pointnet/synaptic_models/instantaneousExc.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/synaptic_models
> copying bmtk/utils/scripts/pointnet/synaptic_models/instantaneousInh.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/synaptic_models
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/popnet
> copying bmtk/utils/scripts/popnet/run_popnet.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/popnet
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/popnet/population_models
> copying bmtk/utils/scripts/popnet/population_models/exc_model.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/popnet/population_models
> copying bmtk/utils/scripts/popnet/population_models/inh_model.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/popnet/population_models
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/popnet/synaptic_models
> copying bmtk/utils/scripts/popnet/synaptic_models/ExcToExc.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/popnet/synaptic_models
> copying bmtk/utils/scripts/popnet/synaptic_models/ExcToInh.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/popnet/synaptic_models
> copying bmtk/utils/scripts/popnet/synaptic_models/InhToExc.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/popnet/synaptic_models
> copying bmtk/utils/scripts/popnet/synaptic_models/InhToInh.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/popnet/synaptic_models
> copying bmtk/utils/scripts/popnet/synaptic_models/input_ExcToExc.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/popnet/synaptic_models
> copying bmtk/utils/scripts/popnet/synaptic_models/input_ExcToInh.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/popnet/synaptic_models
> copying bmtk/utils/sonata/config/config_schema.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/sonata/config
> copying bmtk/simulator/bionet/README.md -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/import3d.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/default_templates
> copying bmtk/simulator/bionet/default_templates/BioAxonStub.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/default_templates
> copying bmtk/simulator/bionet/default_templates/Biophys1.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/default_templates
> copying bmtk/simulator/bionet/default_templates/advance.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/default_templates
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/import3d
> copying bmtk/simulator/bionet/import3d/import3d_gui.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/import3d
> copying bmtk/simulator/bionet/import3d/import3d_sec.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/import3d
> copying bmtk/simulator/bionet/import3d/read_morphml.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/import3d
> copying bmtk/simulator/bionet/import3d/read_nlcda.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/import3d
> copying bmtk/simulator/bionet/import3d/read_nlcda3.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/import3d
> copying bmtk/simulator/bionet/import3d/read_nts.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/import3d
> copying bmtk/simulator/bionet/import3d/read_swc.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/import3d
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/schemas
> copying bmtk/simulator/bionet/schemas/config_schema.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/schemas
> copying bmtk/simulator/bionet/schemas/csv_edge_types.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/schemas
> copying bmtk/simulator/bionet/schemas/csv_node_types_external.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/schemas
> copying bmtk/simulator/bionet/schemas/csv_node_types_internal.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/schemas
> copying bmtk/simulator/bionet/schemas/csv_nodes_external.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/schemas
> copying bmtk/simulator/bionet/schemas/csv_nodes_internal.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/schemas
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core/sonata_schemas
> copying bmtk/simulator/core/sonata_schemas/config_schema.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core/sonata_schemas
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel/cell_metrics
> copying bmtk/simulator/filternet/lgnmodel/cell_metrics/sOFF_cell_data.csv -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel/cell_metrics
> copying bmtk/simulator/filternet/lgnmodel/cell_metrics/sON_cell_data.csv -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel/cell_metrics
> copying bmtk/simulator/filternet/lgnmodel/cell_metrics/sus_sus_cells_v3.csv -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel/cell_metrics
> copying bmtk/simulator/filternet/lgnmodel/cell_metrics/tOFF_cell_data.csv -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel/cell_metrics
> copying bmtk/simulator/filternet/lgnmodel/cell_metrics/tON_cell_data.csv -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel/cell_metrics
> copying bmtk/simulator/filternet/lgnmodel/cell_metrics/trans_sus_cells_v3.csv -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel/cell_metrics
> copying bmtk/simulator/core/modules/ndx-aibs-ecephys.extension.yaml -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core/modules
> copying bmtk/simulator/core/modules/ndx-aibs-ecephys.namespace.yaml -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core/modules
> I: pybuild base:311: /usr/bin/python3 setup.py build 
> /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require'
>   warnings.warn(msg)
> running build
> running build_py
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk
> copying bmtk/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/analyzer
> copying bmtk/analyzer/spikes_analyzer.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/analyzer
> copying bmtk/analyzer/firing_rates.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/analyzer
> copying bmtk/analyzer/utils.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/analyzer
> copying bmtk/analyzer/ecp.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/analyzer
> copying bmtk/analyzer/edges.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/analyzer
> copying bmtk/analyzer/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/analyzer
> copying bmtk/analyzer/compartment.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/analyzer
> copying bmtk/analyzer/spike_trains.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/analyzer
> copying bmtk/analyzer/io_tools.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/analyzer
> copying bmtk/analyzer/cell_vars.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/analyzer
> copying bmtk/analyzer/spikes_loader.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/analyzer
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils
> copying bmtk/utils/sim_setup.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils
> copying bmtk/utils/hdf5_helper.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils
> copying bmtk/utils/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils
> copying bmtk/utils/lazy_property.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder
> copying bmtk/builder/node_set.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder
> copying bmtk/builder/builder_utils.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder
> copying bmtk/builder/id_generator.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder
> copying bmtk/builder/network_builder.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder
> copying bmtk/builder/edge.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder
> copying bmtk/builder/networks.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder
> copying bmtk/builder/index_builders.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder
> copying bmtk/builder/node.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder
> copying bmtk/builder/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder
> copying bmtk/builder/connection_map.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder
> copying bmtk/builder/iterator.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder
> copying bmtk/builder/node_pool.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder
> copying bmtk/builder/connector.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder
> copying bmtk/builder/functor_cache.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator
> copying bmtk/simulator/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/sonata
> copying bmtk/utils/sonata/file.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/sonata
> copying bmtk/utils/sonata/utils.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/sonata
> copying bmtk/utils/sonata/edge.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/sonata
> copying bmtk/utils/sonata/population.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/sonata
> copying bmtk/utils/sonata/file_root.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/sonata
> copying bmtk/utils/sonata/column_property.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/sonata
> copying bmtk/utils/sonata/node.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/sonata
> copying bmtk/utils/sonata/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/sonata
> copying bmtk/utils/sonata/edge_stats.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/sonata
> copying bmtk/utils/sonata/types_table.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/sonata
> copying bmtk/utils/sonata/group.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/sonata
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/compile_mechanisms
> copying bmtk/utils/compile_mechanisms/compile_mechanisms.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/compile_mechanisms
> copying bmtk/utils/compile_mechanisms/__main__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/compile_mechanisms
> copying bmtk/utils/compile_mechanisms/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/compile_mechanisms
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/cell_types_db
> copying bmtk/utils/cell_types_db/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/cell_types_db
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/reports
> copying bmtk/utils/reports/current_writer.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/reports
> copying bmtk/utils/reports/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/reports
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/create_environment
> copying bmtk/utils/create_environment/create_environment.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/create_environment
> copying bmtk/utils/create_environment/env_builder.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/create_environment
> copying bmtk/utils/create_environment/__main__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/create_environment
> copying bmtk/utils/create_environment/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/create_environment
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/io
> copying bmtk/utils/io/firing_rates.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/io
> copying bmtk/utils/io/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/io
> copying bmtk/utils/io/spike_trains.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/io
> copying bmtk/utils/io/ioutils.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/io
> copying bmtk/utils/io/cell_vars.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/io
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/sonata/config
> copying bmtk/utils/sonata/config/sonata_config.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/sonata/config
> copying bmtk/utils/sonata/config/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/sonata/config
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/reports/spike_trains
> copying bmtk/utils/reports/spike_trains/spikes_file_writers.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/reports/spike_trains
> copying bmtk/utils/reports/spike_trains/spike_train_readers.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/reports/spike_trains
> copying bmtk/utils/reports/spike_trains/core.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/reports/spike_trains
> copying bmtk/utils/reports/spike_trains/spike_trains_api.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/reports/spike_trains
> copying bmtk/utils/reports/spike_trains/stats.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/reports/spike_trains
> copying bmtk/utils/reports/spike_trains/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/reports/spike_trains
> copying bmtk/utils/reports/spike_trains/spike_trains.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/reports/spike_trains
> copying bmtk/utils/reports/spike_trains/plotting.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/reports/spike_trains
> copying bmtk/utils/reports/spike_trains/spike_train_buffer.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/reports/spike_trains
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/reports/compartment
> copying bmtk/utils/reports/compartment/core.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/reports/compartment
> copying bmtk/utils/reports/compartment/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/reports/compartment
> copying bmtk/utils/reports/compartment/compartment_writer.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/reports/compartment
> copying bmtk/utils/reports/compartment/plotting.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/reports/compartment
> copying bmtk/utils/reports/compartment/compartment_report.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/reports/compartment
> copying bmtk/utils/reports/compartment/compartment_reader.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/reports/compartment
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder/network_adaptors
> copying bmtk/builder/network_adaptors/dm_network.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder/network_adaptors
> copying bmtk/builder/network_adaptors/edge_props_table.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder/network_adaptors
> copying bmtk/builder/network_adaptors/nxnetwork.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder/network_adaptors
> copying bmtk/builder/network_adaptors/network.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder/network_adaptors
> copying bmtk/builder/network_adaptors/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder/network_adaptors
> copying bmtk/builder/network_adaptors/dm_network_orig.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder/network_adaptors
> copying bmtk/builder/network_adaptors/edges_collator.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder/network_adaptors
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder/bionet
> copying bmtk/builder/bionet/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder/bionet
> copying bmtk/builder/bionet/swc_reader.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder/bionet
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder/edges_sorter
> copying bmtk/builder/edges_sorter/memory_sorter.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder/edges_sorter
> copying bmtk/builder/edges_sorter/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder/edges_sorter
> copying bmtk/builder/edges_sorter/merge_sorter.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder/edges_sorter
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder/auxi
> copying bmtk/builder/auxi/edge_connectors.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder/auxi
> copying bmtk/builder/auxi/node_params.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder/auxi
> copying bmtk/builder/auxi/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder/auxi
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet
> copying bmtk/simulator/pointnet/utils.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet
> copying bmtk/simulator/pointnet/pyfunction_cache.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet
> copying bmtk/simulator/pointnet/gids.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet
> copying bmtk/simulator/pointnet/nest_utils.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet
> copying bmtk/simulator/pointnet/config.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet
> copying bmtk/simulator/pointnet/property_map.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet
> copying bmtk/simulator/pointnet/sonata_adaptors.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet
> copying bmtk/simulator/pointnet/glif_utils.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet
> copying bmtk/simulator/pointnet/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet
> copying bmtk/simulator/pointnet/io_tools.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet
> copying bmtk/simulator/pointnet/pointnetwork.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet
> copying bmtk/simulator/pointnet/pointsimulator.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet
> copying bmtk/simulator/filternet/cell_models.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet
> copying bmtk/simulator/filternet/auditory_processing.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet
> copying bmtk/simulator/filternet/utils.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet
> copying bmtk/simulator/filternet/filtersimulator.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet
> copying bmtk/simulator/filternet/pyfunction_cache.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet
> copying bmtk/simulator/filternet/cell.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet
> copying bmtk/simulator/filternet/config.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet
> copying bmtk/simulator/filternet/filternetwork.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet
> copying bmtk/simulator/filternet/sonata_adaptors.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet
> copying bmtk/simulator/filternet/transfer_functions.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet
> copying bmtk/simulator/filternet/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet
> copying bmtk/simulator/filternet/filters.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet
> copying bmtk/simulator/filternet/io_tools.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/popnet
> copying bmtk/simulator/popnet/utils.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/popnet
> copying bmtk/simulator/popnet/popnetwork.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/popnet
> copying bmtk/simulator/popnet/popnode.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/popnet
> copying bmtk/simulator/popnet/config.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/popnet
> copying bmtk/simulator/popnet/popedge.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/popnet
> copying bmtk/simulator/popnet/sonata_adaptors.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/popnet
> copying bmtk/simulator/popnet/popsimulator.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/popnet
> copying bmtk/simulator/popnet/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/popnet
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/utils
> copying bmtk/simulator/utils/simulation_reports.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/utils
> copying bmtk/simulator/utils/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/utils
> copying bmtk/simulator/utils/simulation_inputs.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/utils
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/utils.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/iclamp.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/pyfunction_cache.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/gids.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/cell.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/config.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/seclamp.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/sonata_adaptors.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/nrn.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/morphology.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/bionetwork.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/virtualcell.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/io_tools.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/pointsomacell.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/biosimulator.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/pointprocesscell.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/biocell.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/nml_reader.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core
> copying bmtk/simulator/core/simulation_config_validator.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core
> copying bmtk/simulator/core/network_reader.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core
> copying bmtk/simulator/core/pyfunction_cache.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core
> copying bmtk/simulator/core/edge_population.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core
> copying bmtk/simulator/core/simulator.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core
> copying bmtk/simulator/core/simulator_network.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core
> copying bmtk/simulator/core/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core
> copying bmtk/simulator/core/simulation_config.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core
> copying bmtk/simulator/core/io_tools.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core
> copying bmtk/simulator/core/node_sets.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core
> copying bmtk/simulator/core/node_population.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core
> copying bmtk/simulator/core/graph.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet/modules
> copying bmtk/simulator/pointnet/modules/multimeter_reporter.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet/modules
> copying bmtk/simulator/pointnet/modules/spikes_inputs.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet/modules
> copying bmtk/simulator/pointnet/modules/iclamp.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet/modules
> copying bmtk/simulator/pointnet/modules/sim_module.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet/modules
> copying bmtk/simulator/pointnet/modules/ecephys_module.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet/modules
> copying bmtk/simulator/pointnet/modules/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet/modules
> copying bmtk/simulator/pointnet/modules/record_spikes.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet/modules
> copying bmtk/simulator/pointnet/modules/weight_recorder.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet/modules
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet/default_setters
> copying bmtk/simulator/pointnet/default_setters/cell_models.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet/default_setters
> copying bmtk/simulator/pointnet/default_setters/synapse_models.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet/default_setters
> copying bmtk/simulator/pointnet/default_setters/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet/default_setters
> copying bmtk/simulator/pointnet/default_setters/synaptic_weights.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet/default_setters
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/util_fns.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/cellmetrics.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/lnunit.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/cellmodel.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/singleunitcell.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/temporalfilter.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/linearfilter.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/lattice_unit_constructor.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/fitfuns.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/lgnmodel1.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/cursor.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/transferfunction.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/poissongeneration.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/kernel.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/movie.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/gaborfilter.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/utilities.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/waveletfilter.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/make_cell_list.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/spatialfilter.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/modules
> copying bmtk/simulator/filternet/modules/create_spikes.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/modules
> copying bmtk/simulator/filternet/modules/base.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/modules
> copying bmtk/simulator/filternet/modules/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/modules
> copying bmtk/simulator/filternet/modules/record_rates.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/modules
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/default_setters
> copying bmtk/simulator/filternet/default_setters/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/default_setters
> copying bmtk/simulator/filternet/default_setters/cell_loaders.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/default_setters
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/modules
> copying bmtk/simulator/bionet/modules/comsol.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/modules
> copying bmtk/simulator/bionet/modules/ecp.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/modules
> copying bmtk/simulator/bionet/modules/iclamp.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/modules
> copying bmtk/simulator/bionet/modules/seclamp.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/modules
> copying bmtk/simulator/bionet/modules/sim_module.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/modules
> copying bmtk/simulator/bionet/modules/xstim_waveforms.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/modules
> copying bmtk/simulator/bionet/modules/xstim.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/modules
> copying bmtk/simulator/bionet/modules/ecephys_module.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/modules
> copying bmtk/simulator/bionet/modules/record_netcons.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/modules
> copying bmtk/simulator/bionet/modules/record_clamp.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/modules
> copying bmtk/simulator/bionet/modules/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/modules
> copying bmtk/simulator/bionet/modules/record_spikes.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/modules
> copying bmtk/simulator/bionet/modules/record_cellvars.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/modules
> copying bmtk/simulator/bionet/modules/save_synapses.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/modules
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/default_setters
> copying bmtk/simulator/bionet/default_setters/cell_models.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/default_setters
> copying bmtk/simulator/bionet/default_setters/synapse_models.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/default_setters
> copying bmtk/simulator/bionet/default_setters/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/default_setters
> copying bmtk/simulator/bionet/default_setters/synaptic_weights.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/default_setters
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core/sonata_reader
> copying bmtk/simulator/core/sonata_reader/network_reader.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core/sonata_reader
> copying bmtk/simulator/core/sonata_reader/node_adaptor.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core/sonata_reader
> copying bmtk/simulator/core/sonata_reader/edge_adaptor.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core/sonata_reader
> copying bmtk/simulator/core/sonata_reader/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core/sonata_reader
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core/modules
> copying bmtk/simulator/core/modules/iclamp.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core/modules
> copying bmtk/simulator/core/modules/ecephys_module.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core/modules
> copying bmtk/simulator/core/modules/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core/modules
> copying bmtk/simulator/core/modules/simulator_module.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core/modules
> running egg_info
> writing bmtk.egg-info/PKG-INFO
> writing dependency_links to bmtk.egg-info/dependency_links.txt
> writing requirements to bmtk.egg-info/requires.txt
> writing top-level names to bmtk.egg-info/top_level.txt
> reading manifest file 'bmtk.egg-info/SOURCES.txt'
> reading manifest template 'MANIFEST.in'
> warning: no files found matching '*.txt' under directory 'bmtk'
> warning: no files found matching '*.cfg' under directory 'bmtk'
> adding license file 'LICENSE.txt'
> writing manifest file 'bmtk.egg-info/SOURCES.txt'
> /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.simulator.bionet.default_templates' is absent from the `packages` configuration.
> !!
> 
>         ********************************************************************************
>         ############################
>         # Package would be ignored #
>         ############################
>         Python recognizes 'bmtk.simulator.bionet.default_templates' as an importable package[^1],
>         but it is absent from setuptools' `packages` configuration.
> 
>         This leads to an ambiguous overall configuration. If you want to distribute this
>         package, please make sure that 'bmtk.simulator.bionet.default_templates' is explicitly added
>         to the `packages` configuration field.
> 
>         Alternatively, you can also rely on setuptools' discovery methods
>         (for example by using `find_namespace_packages(...)`/`find_namespace:`
>         instead of `find_packages(...)`/`find:`).
> 
>         You can read more about "package discovery" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
> 
>         If you don't want 'bmtk.simulator.bionet.default_templates' to be distributed and are
>         already explicitly excluding 'bmtk.simulator.bionet.default_templates' via
>         `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
>         you can try to use `exclude_package_data`, or `include-package-data=False` in
>         combination with a more fine grained `package-data` configuration.
> 
>         You can read more about "package data files" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/datafiles.html
> 
> 
>         [^1]: For Python, any directory (with suitable naming) can be imported,
>               even if it does not contain any `.py` files.
>               On the other hand, currently there is no concept of package data
>               directory, all directories are treated like packages.
>         ********************************************************************************
> 
> !!
>   check.warn(importable)
> /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.simulator.bionet.import3d' is absent from the `packages` configuration.
> !!
> 
>         ********************************************************************************
>         ############################
>         # Package would be ignored #
>         ############################
>         Python recognizes 'bmtk.simulator.bionet.import3d' as an importable package[^1],
>         but it is absent from setuptools' `packages` configuration.
> 
>         This leads to an ambiguous overall configuration. If you want to distribute this
>         package, please make sure that 'bmtk.simulator.bionet.import3d' is explicitly added
>         to the `packages` configuration field.
> 
>         Alternatively, you can also rely on setuptools' discovery methods
>         (for example by using `find_namespace_packages(...)`/`find_namespace:`
>         instead of `find_packages(...)`/`find:`).
> 
>         You can read more about "package discovery" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
> 
>         If you don't want 'bmtk.simulator.bionet.import3d' to be distributed and are
>         already explicitly excluding 'bmtk.simulator.bionet.import3d' via
>         `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
>         you can try to use `exclude_package_data`, or `include-package-data=False` in
>         combination with a more fine grained `package-data` configuration.
> 
>         You can read more about "package data files" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/datafiles.html
> 
> 
>         [^1]: For Python, any directory (with suitable naming) can be imported,
>               even if it does not contain any `.py` files.
>               On the other hand, currently there is no concept of package data
>               directory, all directories are treated like packages.
>         ********************************************************************************
> 
> !!
>   check.warn(importable)
> /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.simulator.bionet.schemas' is absent from the `packages` configuration.
> !!
> 
>         ********************************************************************************
>         ############################
>         # Package would be ignored #
>         ############################
>         Python recognizes 'bmtk.simulator.bionet.schemas' as an importable package[^1],
>         but it is absent from setuptools' `packages` configuration.
> 
>         This leads to an ambiguous overall configuration. If you want to distribute this
>         package, please make sure that 'bmtk.simulator.bionet.schemas' is explicitly added
>         to the `packages` configuration field.
> 
>         Alternatively, you can also rely on setuptools' discovery methods
>         (for example by using `find_namespace_packages(...)`/`find_namespace:`
>         instead of `find_packages(...)`/`find:`).
> 
>         You can read more about "package discovery" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
> 
>         If you don't want 'bmtk.simulator.bionet.schemas' to be distributed and are
>         already explicitly excluding 'bmtk.simulator.bionet.schemas' via
>         `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
>         you can try to use `exclude_package_data`, or `include-package-data=False` in
>         combination with a more fine grained `package-data` configuration.
> 
>         You can read more about "package data files" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/datafiles.html
> 
> 
>         [^1]: For Python, any directory (with suitable naming) can be imported,
>               even if it does not contain any `.py` files.
>               On the other hand, currently there is no concept of package data
>               directory, all directories are treated like packages.
>         ********************************************************************************
> 
> !!
>   check.warn(importable)
> /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.simulator.core.sonata_schemas' is absent from the `packages` configuration.
> !!
> 
>         ********************************************************************************
>         ############################
>         # Package would be ignored #
>         ############################
>         Python recognizes 'bmtk.simulator.core.sonata_schemas' as an importable package[^1],
>         but it is absent from setuptools' `packages` configuration.
> 
>         This leads to an ambiguous overall configuration. If you want to distribute this
>         package, please make sure that 'bmtk.simulator.core.sonata_schemas' is explicitly added
>         to the `packages` configuration field.
> 
>         Alternatively, you can also rely on setuptools' discovery methods
>         (for example by using `find_namespace_packages(...)`/`find_namespace:`
>         instead of `find_packages(...)`/`find:`).
> 
>         You can read more about "package discovery" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
> 
>         If you don't want 'bmtk.simulator.core.sonata_schemas' to be distributed and are
>         already explicitly excluding 'bmtk.simulator.core.sonata_schemas' via
>         `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
>         you can try to use `exclude_package_data`, or `include-package-data=False` in
>         combination with a more fine grained `package-data` configuration.
> 
>         You can read more about "package data files" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/datafiles.html
> 
> 
>         [^1]: For Python, any directory (with suitable naming) can be imported,
>               even if it does not contain any `.py` files.
>               On the other hand, currently there is no concept of package data
>               directory, all directories are treated like packages.
>         ********************************************************************************
> 
> !!
>   check.warn(importable)
> /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.simulator.filternet.lgnmodel.cell_metrics' is absent from the `packages` configuration.
> !!
> 
>         ********************************************************************************
>         ############################
>         # Package would be ignored #
>         ############################
>         Python recognizes 'bmtk.simulator.filternet.lgnmodel.cell_metrics' as an importable package[^1],
>         but it is absent from setuptools' `packages` configuration.
> 
>         This leads to an ambiguous overall configuration. If you want to distribute this
>         package, please make sure that 'bmtk.simulator.filternet.lgnmodel.cell_metrics' is explicitly added
>         to the `packages` configuration field.
> 
>         Alternatively, you can also rely on setuptools' discovery methods
>         (for example by using `find_namespace_packages(...)`/`find_namespace:`
>         instead of `find_packages(...)`/`find:`).
> 
>         You can read more about "package discovery" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
> 
>         If you don't want 'bmtk.simulator.filternet.lgnmodel.cell_metrics' to be distributed and are
>         already explicitly excluding 'bmtk.simulator.filternet.lgnmodel.cell_metrics' via
>         `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
>         you can try to use `exclude_package_data`, or `include-package-data=False` in
>         combination with a more fine grained `package-data` configuration.
> 
>         You can read more about "package data files" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/datafiles.html
> 
> 
>         [^1]: For Python, any directory (with suitable naming) can be imported,
>               even if it does not contain any `.py` files.
>               On the other hand, currently there is no concept of package data
>               directory, all directories are treated like packages.
>         ********************************************************************************
> 
> !!
>   check.warn(importable)
> /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts' is absent from the `packages` configuration.
> !!
> 
>         ********************************************************************************
>         ############################
>         # Package would be ignored #
>         ############################
>         Python recognizes 'bmtk.utils.scripts' as an importable package[^1],
>         but it is absent from setuptools' `packages` configuration.
> 
>         This leads to an ambiguous overall configuration. If you want to distribute this
>         package, please make sure that 'bmtk.utils.scripts' is explicitly added
>         to the `packages` configuration field.
> 
>         Alternatively, you can also rely on setuptools' discovery methods
>         (for example by using `find_namespace_packages(...)`/`find_namespace:`
>         instead of `find_packages(...)`/`find:`).
> 
>         You can read more about "package discovery" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
> 
>         If you don't want 'bmtk.utils.scripts' to be distributed and are
>         already explicitly excluding 'bmtk.utils.scripts' via
>         `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
>         you can try to use `exclude_package_data`, or `include-package-data=False` in
>         combination with a more fine grained `package-data` configuration.
> 
>         You can read more about "package data files" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/datafiles.html
> 
> 
>         [^1]: For Python, any directory (with suitable naming) can be imported,
>               even if it does not contain any `.py` files.
>               On the other hand, currently there is no concept of package data
>               directory, all directories are treated like packages.
>         ********************************************************************************
> 
> !!
>   check.warn(importable)
> /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.bionet' is absent from the `packages` configuration.
> !!
> 
>         ********************************************************************************
>         ############################
>         # Package would be ignored #
>         ############################
>         Python recognizes 'bmtk.utils.scripts.bionet' as an importable package[^1],
>         but it is absent from setuptools' `packages` configuration.
> 
>         This leads to an ambiguous overall configuration. If you want to distribute this
>         package, please make sure that 'bmtk.utils.scripts.bionet' is explicitly added
>         to the `packages` configuration field.
> 
>         Alternatively, you can also rely on setuptools' discovery methods
>         (for example by using `find_namespace_packages(...)`/`find_namespace:`
>         instead of `find_packages(...)`/`find:`).
> 
>         You can read more about "package discovery" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
> 
>         If you don't want 'bmtk.utils.scripts.bionet' to be distributed and are
>         already explicitly excluding 'bmtk.utils.scripts.bionet' via
>         `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
>         you can try to use `exclude_package_data`, or `include-package-data=False` in
>         combination with a more fine grained `package-data` configuration.
> 
>         You can read more about "package data files" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/datafiles.html
> 
> 
>         [^1]: For Python, any directory (with suitable naming) can be imported,
>               even if it does not contain any `.py` files.
>               On the other hand, currently there is no concept of package data
>               directory, all directories are treated like packages.
>         ********************************************************************************
> 
> !!
>   check.warn(importable)
> /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.bionet.biophysical_neuron_models' is absent from the `packages` configuration.
> !!
> 
>         ********************************************************************************
>         ############################
>         # Package would be ignored #
>         ############################
>         Python recognizes 'bmtk.utils.scripts.bionet.biophysical_neuron_models' as an importable package[^1],
>         but it is absent from setuptools' `packages` configuration.
> 
>         This leads to an ambiguous overall configuration. If you want to distribute this
>         package, please make sure that 'bmtk.utils.scripts.bionet.biophysical_neuron_models' is explicitly added
>         to the `packages` configuration field.
> 
>         Alternatively, you can also rely on setuptools' discovery methods
>         (for example by using `find_namespace_packages(...)`/`find_namespace:`
>         instead of `find_packages(...)`/`find:`).
> 
>         You can read more about "package discovery" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
> 
>         If you don't want 'bmtk.utils.scripts.bionet.biophysical_neuron_models' to be distributed and are
>         already explicitly excluding 'bmtk.utils.scripts.bionet.biophysical_neuron_models' via
>         `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
>         you can try to use `exclude_package_data`, or `include-package-data=False` in
>         combination with a more fine grained `package-data` configuration.
> 
>         You can read more about "package data files" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/datafiles.html
> 
> 
>         [^1]: For Python, any directory (with suitable naming) can be imported,
>               even if it does not contain any `.py` files.
>               On the other hand, currently there is no concept of package data
>               directory, all directories are treated like packages.
>         ********************************************************************************
> 
> !!
>   check.warn(importable)
> /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.bionet.filter_models' is absent from the `packages` configuration.
> !!
> 
>         ********************************************************************************
>         ############################
>         # Package would be ignored #
>         ############################
>         Python recognizes 'bmtk.utils.scripts.bionet.filter_models' as an importable package[^1],
>         but it is absent from setuptools' `packages` configuration.
> 
>         This leads to an ambiguous overall configuration. If you want to distribute this
>         package, please make sure that 'bmtk.utils.scripts.bionet.filter_models' is explicitly added
>         to the `packages` configuration field.
> 
>         Alternatively, you can also rely on setuptools' discovery methods
>         (for example by using `find_namespace_packages(...)`/`find_namespace:`
>         instead of `find_packages(...)`/`find:`).
> 
>         You can read more about "package discovery" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
> 
>         If you don't want 'bmtk.utils.scripts.bionet.filter_models' to be distributed and are
>         already explicitly excluding 'bmtk.utils.scripts.bionet.filter_models' via
>         `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
>         you can try to use `exclude_package_data`, or `include-package-data=False` in
>         combination with a more fine grained `package-data` configuration.
> 
>         You can read more about "package data files" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/datafiles.html
> 
> 
>         [^1]: For Python, any directory (with suitable naming) can be imported,
>               even if it does not contain any `.py` files.
>               On the other hand, currently there is no concept of package data
>               directory, all directories are treated like packages.
>         ********************************************************************************
> 
> !!
>   check.warn(importable)
> /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.bionet.mechanisms.modfiles' is absent from the `packages` configuration.
> !!
> 
>         ********************************************************************************
>         ############################
>         # Package would be ignored #
>         ############################
>         Python recognizes 'bmtk.utils.scripts.bionet.mechanisms.modfiles' as an importable package[^1],
>         but it is absent from setuptools' `packages` configuration.
> 
>         This leads to an ambiguous overall configuration. If you want to distribute this
>         package, please make sure that 'bmtk.utils.scripts.bionet.mechanisms.modfiles' is explicitly added
>         to the `packages` configuration field.
> 
>         Alternatively, you can also rely on setuptools' discovery methods
>         (for example by using `find_namespace_packages(...)`/`find_namespace:`
>         instead of `find_packages(...)`/`find:`).
> 
>         You can read more about "package discovery" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
> 
>         If you don't want 'bmtk.utils.scripts.bionet.mechanisms.modfiles' to be distributed and are
>         already explicitly excluding 'bmtk.utils.scripts.bionet.mechanisms.modfiles' via
>         `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
>         you can try to use `exclude_package_data`, or `include-package-data=False` in
>         combination with a more fine grained `package-data` configuration.
> 
>         You can read more about "package data files" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/datafiles.html
> 
> 
>         [^1]: For Python, any directory (with suitable naming) can be imported,
>               even if it does not contain any `.py` files.
>               On the other hand, currently there is no concept of package data
>               directory, all directories are treated like packages.
>         ********************************************************************************
> 
> !!
>   check.warn(importable)
> /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.bionet.morphologies' is absent from the `packages` configuration.
> !!
> 
>         ********************************************************************************
>         ############################
>         # Package would be ignored #
>         ############################
>         Python recognizes 'bmtk.utils.scripts.bionet.morphologies' as an importable package[^1],
>         but it is absent from setuptools' `packages` configuration.
> 
>         This leads to an ambiguous overall configuration. If you want to distribute this
>         package, please make sure that 'bmtk.utils.scripts.bionet.morphologies' is explicitly added
>         to the `packages` configuration field.
> 
>         Alternatively, you can also rely on setuptools' discovery methods
>         (for example by using `find_namespace_packages(...)`/`find_namespace:`
>         instead of `find_packages(...)`/`find:`).
> 
>         You can read more about "package discovery" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
> 
>         If you don't want 'bmtk.utils.scripts.bionet.morphologies' to be distributed and are
>         already explicitly excluding 'bmtk.utils.scripts.bionet.morphologies' via
>         `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
>         you can try to use `exclude_package_data`, or `include-package-data=False` in
>         combination with a more fine grained `package-data` configuration.
> 
>         You can read more about "package data files" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/datafiles.html
> 
> 
>         [^1]: For Python, any directory (with suitable naming) can be imported,
>               even if it does not contain any `.py` files.
>               On the other hand, currently there is no concept of package data
>               directory, all directories are treated like packages.
>         ********************************************************************************
> 
> !!
>   check.warn(importable)
> /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.bionet.point_neuron_models' is absent from the `packages` configuration.
> !!
> 
>         ********************************************************************************
>         ############################
>         # Package would be ignored #
>         ############################
>         Python recognizes 'bmtk.utils.scripts.bionet.point_neuron_models' as an importable package[^1],
>         but it is absent from setuptools' `packages` configuration.
> 
>         This leads to an ambiguous overall configuration. If you want to distribute this
>         package, please make sure that 'bmtk.utils.scripts.bionet.point_neuron_models' is explicitly added
>         to the `packages` configuration field.
> 
>         Alternatively, you can also rely on setuptools' discovery methods
>         (for example by using `find_namespace_packages(...)`/`find_namespace:`
>         instead of `find_packages(...)`/`find:`).
> 
>         You can read more about "package discovery" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
> 
>         If you don't want 'bmtk.utils.scripts.bionet.point_neuron_models' to be distributed and are
>         already explicitly excluding 'bmtk.utils.scripts.bionet.point_neuron_models' via
>         `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
>         you can try to use `exclude_package_data`, or `include-package-data=False` in
>         combination with a more fine grained `package-data` configuration.
> 
>         You can read more about "package data files" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/datafiles.html
> 
> 
>         [^1]: For Python, any directory (with suitable naming) can be imported,
>               even if it does not contain any `.py` files.
>               On the other hand, currently there is no concept of package data
>               directory, all directories are treated like packages.
>         ********************************************************************************
> 
> !!
>   check.warn(importable)
> /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.bionet.synaptic_models' is absent from the `packages` configuration.
> !!
> 
>         ********************************************************************************
>         ############################
>         # Package would be ignored #
>         ############################
>         Python recognizes 'bmtk.utils.scripts.bionet.synaptic_models' as an importable package[^1],
>         but it is absent from setuptools' `packages` configuration.
> 
>         This leads to an ambiguous overall configuration. If you want to distribute this
>         package, please make sure that 'bmtk.utils.scripts.bionet.synaptic_models' is explicitly added
>         to the `packages` configuration field.
> 
>         Alternatively, you can also rely on setuptools' discovery methods
>         (for example by using `find_namespace_packages(...)`/`find_namespace:`
>         instead of `find_packages(...)`/`find:`).
> 
>         You can read more about "package discovery" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
> 
>         If you don't want 'bmtk.utils.scripts.bionet.synaptic_models' to be distributed and are
>         already explicitly excluding 'bmtk.utils.scripts.bionet.synaptic_models' via
>         `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
>         you can try to use `exclude_package_data`, or `include-package-data=False` in
>         combination with a more fine grained `package-data` configuration.
> 
>         You can read more about "package data files" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/datafiles.html
> 
> 
>         [^1]: For Python, any directory (with suitable naming) can be imported,
>               even if it does not contain any `.py` files.
>               On the other hand, currently there is no concept of package data
>               directory, all directories are treated like packages.
>         ********************************************************************************
> 
> !!
>   check.warn(importable)
> /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.bionet.templates' is absent from the `packages` configuration.
> !!
> 
>         ********************************************************************************
>         ############################
>         # Package would be ignored #
>         ############################
>         Python recognizes 'bmtk.utils.scripts.bionet.templates' as an importable package[^1],
>         but it is absent from setuptools' `packages` configuration.
> 
>         This leads to an ambiguous overall configuration. If you want to distribute this
>         package, please make sure that 'bmtk.utils.scripts.bionet.templates' is explicitly added
>         to the `packages` configuration field.
> 
>         Alternatively, you can also rely on setuptools' discovery methods
>         (for example by using `find_namespace_packages(...)`/`find_namespace:`
>         instead of `find_packages(...)`/`find:`).
> 
>         You can read more about "package discovery" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
> 
>         If you don't want 'bmtk.utils.scripts.bionet.templates' to be distributed and are
>         already explicitly excluding 'bmtk.utils.scripts.bionet.templates' via
>         `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
>         you can try to use `exclude_package_data`, or `include-package-data=False` in
>         combination with a more fine grained `package-data` configuration.
> 
>         You can read more about "package data files" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/datafiles.html
> 
> 
>         [^1]: For Python, any directory (with suitable naming) can be imported,
>               even if it does not contain any `.py` files.
>               On the other hand, currently there is no concept of package data
>               directory, all directories are treated like packages.
>         ********************************************************************************
> 
> !!
>   check.warn(importable)
> /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.filternet' is absent from the `packages` configuration.
> !!
> 
>         ********************************************************************************
>         ############################
>         # Package would be ignored #
>         ############################
>         Python recognizes 'bmtk.utils.scripts.filternet' as an importable package[^1],
>         but it is absent from setuptools' `packages` configuration.
> 
>         This leads to an ambiguous overall configuration. If you want to distribute this
>         package, please make sure that 'bmtk.utils.scripts.filternet' is explicitly added
>         to the `packages` configuration field.
> 
>         Alternatively, you can also rely on setuptools' discovery methods
>         (for example by using `find_namespace_packages(...)`/`find_namespace:`
>         instead of `find_packages(...)`/`find:`).
> 
>         You can read more about "package discovery" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
> 
>         If you don't want 'bmtk.utils.scripts.filternet' to be distributed and are
>         already explicitly excluding 'bmtk.utils.scripts.filternet' via
>         `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
>         you can try to use `exclude_package_data`, or `include-package-data=False` in
>         combination with a more fine grained `package-data` configuration.
> 
>         You can read more about "package data files" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/datafiles.html
> 
> 
>         [^1]: For Python, any directory (with suitable naming) can be imported,
>               even if it does not contain any `.py` files.
>               On the other hand, currently there is no concept of package data
>               directory, all directories are treated like packages.
>         ********************************************************************************
> 
> !!
>   check.warn(importable)
> /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.filternet.filter_models' is absent from the `packages` configuration.
> !!
> 
>         ********************************************************************************
>         ############################
>         # Package would be ignored #
>         ############################
>         Python recognizes 'bmtk.utils.scripts.filternet.filter_models' as an importable package[^1],
>         but it is absent from setuptools' `packages` configuration.
> 
>         This leads to an ambiguous overall configuration. If you want to distribute this
>         package, please make sure that 'bmtk.utils.scripts.filternet.filter_models' is explicitly added
>         to the `packages` configuration field.
> 
>         Alternatively, you can also rely on setuptools' discovery methods
>         (for example by using `find_namespace_packages(...)`/`find_namespace:`
>         instead of `find_packages(...)`/`find:`).
> 
>         You can read more about "package discovery" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
> 
>         If you don't want 'bmtk.utils.scripts.filternet.filter_models' to be distributed and are
>         already explicitly excluding 'bmtk.utils.scripts.filternet.filter_models' via
>         `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
>         you can try to use `exclude_package_data`, or `include-package-data=False` in
>         combination with a more fine grained `package-data` configuration.
> 
>         You can read more about "package data files" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/datafiles.html
> 
> 
>         [^1]: For Python, any directory (with suitable naming) can be imported,
>               even if it does not contain any `.py` files.
>               On the other hand, currently there is no concept of package data
>               directory, all directories are treated like packages.
>         ********************************************************************************
> 
> !!
>   check.warn(importable)
> /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.pointnet' is absent from the `packages` configuration.
> !!
> 
>         ********************************************************************************
>         ############################
>         # Package would be ignored #
>         ############################
>         Python recognizes 'bmtk.utils.scripts.pointnet' as an importable package[^1],
>         but it is absent from setuptools' `packages` configuration.
> 
>         This leads to an ambiguous overall configuration. If you want to distribute this
>         package, please make sure that 'bmtk.utils.scripts.pointnet' is explicitly added
>         to the `packages` configuration field.
> 
>         Alternatively, you can also rely on setuptools' discovery methods
>         (for example by using `find_namespace_packages(...)`/`find_namespace:`
>         instead of `find_packages(...)`/`find:`).
> 
>         You can read more about "package discovery" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
> 
>         If you don't want 'bmtk.utils.scripts.pointnet' to be distributed and are
>         already explicitly excluding 'bmtk.utils.scripts.pointnet' via
>         `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
>         you can try to use `exclude_package_data`, or `include-package-data=False` in
>         combination with a more fine grained `package-data` configuration.
> 
>         You can read more about "package data files" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/datafiles.html
> 
> 
>         [^1]: For Python, any directory (with suitable naming) can be imported,
>               even if it does not contain any `.py` files.
>               On the other hand, currently there is no concept of package data
>               directory, all directories are treated like packages.
>         ********************************************************************************
> 
> !!
>   check.warn(importable)
> /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.pointnet.filter_models' is absent from the `packages` configuration.
> !!
> 
>         ********************************************************************************
>         ############################
>         # Package would be ignored #
>         ############################
>         Python recognizes 'bmtk.utils.scripts.pointnet.filter_models' as an importable package[^1],
>         but it is absent from setuptools' `packages` configuration.
> 
>         This leads to an ambiguous overall configuration. If you want to distribute this
>         package, please make sure that 'bmtk.utils.scripts.pointnet.filter_models' is explicitly added
>         to the `packages` configuration field.
> 
>         Alternatively, you can also rely on setuptools' discovery methods
>         (for example by using `find_namespace_packages(...)`/`find_namespace:`
>         instead of `find_packages(...)`/`find:`).
> 
>         You can read more about "package discovery" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
> 
>         If you don't want 'bmtk.utils.scripts.pointnet.filter_models' to be distributed and are
>         already explicitly excluding 'bmtk.utils.scripts.pointnet.filter_models' via
>         `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
>         you can try to use `exclude_package_data`, or `include-package-data=False` in
>         combination with a more fine grained `package-data` configuration.
> 
>         You can read more about "package data files" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/datafiles.html
> 
> 
>         [^1]: For Python, any directory (with suitable naming) can be imported,
>               even if it does not contain any `.py` files.
>               On the other hand, currently there is no concept of package data
>               directory, all directories are treated like packages.
>         ********************************************************************************
> 
> !!
>   check.warn(importable)
> /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.pointnet.point_neuron_models' is absent from the `packages` configuration.
> !!
> 
>         ********************************************************************************
>         ############################
>         # Package would be ignored #
>         ############################
>         Python recognizes 'bmtk.utils.scripts.pointnet.point_neuron_models' as an importable package[^1],
>         but it is absent from setuptools' `packages` configuration.
> 
>         This leads to an ambiguous overall configuration. If you want to distribute this
>         package, please make sure that 'bmtk.utils.scripts.pointnet.point_neuron_models' is explicitly added
>         to the `packages` configuration field.
> 
>         Alternatively, you can also rely on setuptools' discovery methods
>         (for example by using `find_namespace_packages(...)`/`find_namespace:`
>         instead of `find_packages(...)`/`find:`).
> 
>         You can read more about "package discovery" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
> 
>         If you don't want 'bmtk.utils.scripts.pointnet.point_neuron_models' to be distributed and are
>         already explicitly excluding 'bmtk.utils.scripts.pointnet.point_neuron_models' via
>         `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
>         you can try to use `exclude_package_data`, or `include-package-data=False` in
>         combination with a more fine grained `package-data` configuration.
> 
>         You can read more about "package data files" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/datafiles.html
> 
> 
>         [^1]: For Python, any directory (with suitable naming) can be imported,
>               even if it does not contain any `.py` files.
>               On the other hand, currently there is no concept of package data
>               directory, all directories are treated like packages.
>         ********************************************************************************
> 
> !!
>   check.warn(importable)
> /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.pointnet.synaptic_models' is absent from the `packages` configuration.
> !!
> 
>         ********************************************************************************
>         ############################
>         # Package would be ignored #
>         ############################
>         Python recognizes 'bmtk.utils.scripts.pointnet.synaptic_models' as an importable package[^1],
>         but it is absent from setuptools' `packages` configuration.
> 
>         This leads to an ambiguous overall configuration. If you want to distribute this
>         package, please make sure that 'bmtk.utils.scripts.pointnet.synaptic_models' is explicitly added
>         to the `packages` configuration field.
> 
>         Alternatively, you can also rely on setuptools' discovery methods
>         (for example by using `find_namespace_packages(...)`/`find_namespace:`
>         instead of `find_packages(...)`/`find:`).
> 
>         You can read more about "package discovery" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
> 
>         If you don't want 'bmtk.utils.scripts.pointnet.synaptic_models' to be distributed and are
>         already explicitly excluding 'bmtk.utils.scripts.pointnet.synaptic_models' via
>         `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
>         you can try to use `exclude_package_data`, or `include-package-data=False` in
>         combination with a more fine grained `package-data` configuration.
> 
>         You can read more about "package data files" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/datafiles.html
> 
> 
>         [^1]: For Python, any directory (with suitable naming) can be imported,
>               even if it does not contain any `.py` files.
>               On the other hand, currently there is no concept of package data
>               directory, all directories are treated like packages.
>         ********************************************************************************
> 
> !!
>   check.warn(importable)
> /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.popnet' is absent from the `packages` configuration.
> !!
> 
>         ********************************************************************************
>         ############################
>         # Package would be ignored #
>         ############################
>         Python recognizes 'bmtk.utils.scripts.popnet' as an importable package[^1],
>         but it is absent from setuptools' `packages` configuration.
> 
>         This leads to an ambiguous overall configuration. If you want to distribute this
>         package, please make sure that 'bmtk.utils.scripts.popnet' is explicitly added
>         to the `packages` configuration field.
> 
>         Alternatively, you can also rely on setuptools' discovery methods
>         (for example by using `find_namespace_packages(...)`/`find_namespace:`
>         instead of `find_packages(...)`/`find:`).
> 
>         You can read more about "package discovery" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
> 
>         If you don't want 'bmtk.utils.scripts.popnet' to be distributed and are
>         already explicitly excluding 'bmtk.utils.scripts.popnet' via
>         `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
>         you can try to use `exclude_package_data`, or `include-package-data=False` in
>         combination with a more fine grained `package-data` configuration.
> 
>         You can read more about "package data files" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/datafiles.html
> 
> 
>         [^1]: For Python, any directory (with suitable naming) can be imported,
>               even if it does not contain any `.py` files.
>               On the other hand, currently there is no concept of package data
>               directory, all directories are treated like packages.
>         ********************************************************************************
> 
> !!
>   check.warn(importable)
> /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.popnet.population_models' is absent from the `packages` configuration.
> !!
> 
>         ********************************************************************************
>         ############################
>         # Package would be ignored #
>         ############################
>         Python recognizes 'bmtk.utils.scripts.popnet.population_models' as an importable package[^1],
>         but it is absent from setuptools' `packages` configuration.
> 
>         This leads to an ambiguous overall configuration. If you want to distribute this
>         package, please make sure that 'bmtk.utils.scripts.popnet.population_models' is explicitly added
>         to the `packages` configuration field.
> 
>         Alternatively, you can also rely on setuptools' discovery methods
>         (for example by using `find_namespace_packages(...)`/`find_namespace:`
>         instead of `find_packages(...)`/`find:`).
> 
>         You can read more about "package discovery" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
> 
>         If you don't want 'bmtk.utils.scripts.popnet.population_models' to be distributed and are
>         already explicitly excluding 'bmtk.utils.scripts.popnet.population_models' via
>         `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
>         you can try to use `exclude_package_data`, or `include-package-data=False` in
>         combination with a more fine grained `package-data` configuration.
> 
>         You can read more about "package data files" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/datafiles.html
> 
> 
>         [^1]: For Python, any directory (with suitable naming) can be imported,
>               even if it does not contain any `.py` files.
>               On the other hand, currently there is no concept of package data
>               directory, all directories are treated like packages.
>         ********************************************************************************
> 
> !!
>   check.warn(importable)
> /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.popnet.synaptic_models' is absent from the `packages` configuration.
> !!
> 
>         ********************************************************************************
>         ############################
>         # Package would be ignored #
>         ############################
>         Python recognizes 'bmtk.utils.scripts.popnet.synaptic_models' as an importable package[^1],
>         but it is absent from setuptools' `packages` configuration.
> 
>         This leads to an ambiguous overall configuration. If you want to distribute this
>         package, please make sure that 'bmtk.utils.scripts.popnet.synaptic_models' is explicitly added
>         to the `packages` configuration field.
> 
>         Alternatively, you can also rely on setuptools' discovery methods
>         (for example by using `find_namespace_packages(...)`/`find_namespace:`
>         instead of `find_packages(...)`/`find:`).
> 
>         You can read more about "package discovery" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
> 
>         If you don't want 'bmtk.utils.scripts.popnet.synaptic_models' to be distributed and are
>         already explicitly excluding 'bmtk.utils.scripts.popnet.synaptic_models' via
>         `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
>         you can try to use `exclude_package_data`, or `include-package-data=False` in
>         combination with a more fine grained `package-data` configuration.
> 
>         You can read more about "package data files" on setuptools documentation page:
> 
>         - https://setuptools.pypa.io/en/latest/userguide/datafiles.html
> 
> 
>         [^1]: For Python, any directory (with suitable naming) can be imported,
>               even if it does not contain any `.py` files.
>               On the other hand, currently there is no concept of package data
>               directory, all directories are treated like packages.
>         ********************************************************************************
> 
> !!
>   check.warn(importable)
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts
> copying bmtk/utils/scripts/sonata.circuit_config.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts
> copying bmtk/utils/scripts/sonata.simulation_config.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet
> copying bmtk/utils/scripts/bionet/default_config.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet
> copying bmtk/utils/scripts/bionet/run_bionet.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/biophysical_neuron_models
> copying bmtk/utils/scripts/bionet/biophysical_neuron_models/318331342_fit.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/biophysical_neuron_models
> copying bmtk/utils/scripts/bionet/biophysical_neuron_models/472363762_fit.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/biophysical_neuron_models
> copying bmtk/utils/scripts/bionet/biophysical_neuron_models/472912177_fit.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/biophysical_neuron_models
> copying bmtk/utils/scripts/bionet/biophysical_neuron_models/473862421_fit.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/biophysical_neuron_models
> copying bmtk/utils/scripts/bionet/biophysical_neuron_models/473863035_fit.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/biophysical_neuron_models
> copying bmtk/utils/scripts/bionet/biophysical_neuron_models/473863510_fit.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/biophysical_neuron_models
> copying bmtk/utils/scripts/bionet/biophysical_neuron_models/485184849_fit.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/biophysical_neuron_models
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/filter_models
> copying bmtk/utils/scripts/bionet/filter_models/sOFF_TF1.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/filter_models
> copying bmtk/utils/scripts/bionet/filter_models/sOFF_TF15.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/filter_models
> copying bmtk/utils/scripts/bionet/filter_models/sOFF_TF2.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/filter_models
> copying bmtk/utils/scripts/bionet/filter_models/sOFF_TF4.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/filter_models
> copying bmtk/utils/scripts/bionet/filter_models/sOFF_TF8.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/filter_models
> copying bmtk/utils/scripts/bionet/filter_models/sON_TF1.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/filter_models
> copying bmtk/utils/scripts/bionet/filter_models/sON_TF2.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/filter_models
> copying bmtk/utils/scripts/bionet/filter_models/sON_TF4.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/filter_models
> copying bmtk/utils/scripts/bionet/filter_models/sON_TF8.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/filter_models
> copying bmtk/utils/scripts/bionet/filter_models/tOFF_TF15.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/filter_models
> copying bmtk/utils/scripts/bionet/filter_models/tOFF_TF4.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/filter_models
> copying bmtk/utils/scripts/bionet/filter_models/tOFF_TF8.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/filter_models
> copying bmtk/utils/scripts/bionet/filter_models/tON_TF15.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/filter_models
> copying bmtk/utils/scripts/bionet/filter_models/tON_TF4.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/filter_models
> copying bmtk/utils/scripts/bionet/filter_models/tON_TF8.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/filter_models
> copying bmtk/utils/scripts/bionet/filter_models/tON_TF8_demo.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/filter_models
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/CaDynamics.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Ca_HVA.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Ca_LVA.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Ih.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Im.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Im_v2.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/K_P.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/K_T.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Kd.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Kv2like.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Kv3_1.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/NaTa.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/NaTs.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/NaV.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Nap.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/SK.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/vecevent.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/morphologies
> copying bmtk/utils/scripts/bionet/morphologies/Nr5a1_471087815_m.swc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/morphologies
> copying bmtk/utils/scripts/bionet/morphologies/Pvalb_469628681_m.swc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/morphologies
> copying bmtk/utils/scripts/bionet/morphologies/Pvalb_470522102_m.swc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/morphologies
> copying bmtk/utils/scripts/bionet/morphologies/Rorb_325404214_m.swc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/morphologies
> copying bmtk/utils/scripts/bionet/morphologies/Scnn1a_473845048_m.swc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/morphologies
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/point_neuron_models
> copying bmtk/utils/scripts/bionet/point_neuron_models/IntFire1_exc_1.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/point_neuron_models
> copying bmtk/utils/scripts/bionet/point_neuron_models/IntFire1_inh_1.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/point_neuron_models
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/synaptic_models
> copying bmtk/utils/scripts/bionet/synaptic_models/AMPA_ExcToExc.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/synaptic_models
> copying bmtk/utils/scripts/bionet/synaptic_models/AMPA_ExcToInh.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/synaptic_models
> copying bmtk/utils/scripts/bionet/synaptic_models/GABA_InhToExc.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/synaptic_models
> copying bmtk/utils/scripts/bionet/synaptic_models/GABA_InhToInh.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/synaptic_models
> copying bmtk/utils/scripts/bionet/synaptic_models/instantaneousExc.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/synaptic_models
> copying bmtk/utils/scripts/bionet/synaptic_models/instantaneousInh.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/synaptic_models
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/templates
> copying bmtk/utils/scripts/bionet/templates/BioAllen_old.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/templates
> copying bmtk/utils/scripts/bionet/templates/BioAxonStub.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/templates
> copying bmtk/utils/scripts/bionet/templates/Biophys1.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/templates
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/filternet
> copying bmtk/utils/scripts/filternet/run_filternet.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/filternet
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/filternet/filter_models
> copying bmtk/utils/scripts/filternet/filter_models/sOFF_TF1.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/filternet/filter_models
> copying bmtk/utils/scripts/filternet/filter_models/sOFF_TF15.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/filternet/filter_models
> copying bmtk/utils/scripts/filternet/filter_models/sOFF_TF2.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/filternet/filter_models
> copying bmtk/utils/scripts/filternet/filter_models/sOFF_TF4.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/filternet/filter_models
> copying bmtk/utils/scripts/filternet/filter_models/sOFF_TF8.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/filternet/filter_models
> copying bmtk/utils/scripts/filternet/filter_models/sON_TF1.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/filternet/filter_models
> copying bmtk/utils/scripts/filternet/filter_models/sON_TF2.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/filternet/filter_models
> copying bmtk/utils/scripts/filternet/filter_models/sON_TF4.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/filternet/filter_models
> copying bmtk/utils/scripts/filternet/filter_models/sON_TF8.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/filternet/filter_models
> copying bmtk/utils/scripts/filternet/filter_models/tOFF_TF15.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/filternet/filter_models
> copying bmtk/utils/scripts/filternet/filter_models/tOFF_TF4.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/filternet/filter_models
> copying bmtk/utils/scripts/filternet/filter_models/tOFF_TF8.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/filternet/filter_models
> copying bmtk/utils/scripts/filternet/filter_models/tON_TF15.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/filternet/filter_models
> copying bmtk/utils/scripts/filternet/filter_models/tON_TF4.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/filternet/filter_models
> copying bmtk/utils/scripts/filternet/filter_models/tON_TF8.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/filternet/filter_models
> copying bmtk/utils/scripts/filternet/filter_models/tON_TF8_demo.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/filternet/filter_models
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet
> copying bmtk/utils/scripts/pointnet/run_pointnet.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/filter_models
> copying bmtk/utils/scripts/pointnet/filter_models/sOFF_TF1.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/filter_models
> copying bmtk/utils/scripts/pointnet/filter_models/sOFF_TF15.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/filter_models
> copying bmtk/utils/scripts/pointnet/filter_models/sOFF_TF2.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/filter_models
> copying bmtk/utils/scripts/pointnet/filter_models/sOFF_TF4.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/filter_models
> copying bmtk/utils/scripts/pointnet/filter_models/sOFF_TF8.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/filter_models
> copying bmtk/utils/scripts/pointnet/filter_models/sON_TF1.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/filter_models
> copying bmtk/utils/scripts/pointnet/filter_models/sON_TF2.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/filter_models
> copying bmtk/utils/scripts/pointnet/filter_models/sON_TF4.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/filter_models
> copying bmtk/utils/scripts/pointnet/filter_models/sON_TF8.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/filter_models
> copying bmtk/utils/scripts/pointnet/filter_models/tOFF_TF15.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/filter_models
> copying bmtk/utils/scripts/pointnet/filter_models/tOFF_TF4.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/filter_models
> copying bmtk/utils/scripts/pointnet/filter_models/tOFF_TF8.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/filter_models
> copying bmtk/utils/scripts/pointnet/filter_models/tON_TF15.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/filter_models
> copying bmtk/utils/scripts/pointnet/filter_models/tON_TF4.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/filter_models
> copying bmtk/utils/scripts/pointnet/filter_models/tON_TF8.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/filter_models
> copying bmtk/utils/scripts/pointnet/filter_models/tON_TF8_demo.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/filter_models
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/point_neuron_models
> copying bmtk/utils/scripts/pointnet/point_neuron_models/472363762_point.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/point_neuron_models
> copying bmtk/utils/scripts/pointnet/point_neuron_models/472912177_point.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/point_neuron_models
> copying bmtk/utils/scripts/pointnet/point_neuron_models/473862421_point.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/point_neuron_models
> copying bmtk/utils/scripts/pointnet/point_neuron_models/473863035_point.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/point_neuron_models
> copying bmtk/utils/scripts/pointnet/point_neuron_models/473863510_point.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/point_neuron_models
> copying bmtk/utils/scripts/pointnet/point_neuron_models/IntFire1_exc_point.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/point_neuron_models
> copying bmtk/utils/scripts/pointnet/point_neuron_models/IntFire1_inh_point.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/point_neuron_models
> copying bmtk/utils/scripts/pointnet/point_neuron_models/filter_point.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/point_neuron_models
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/synaptic_models
> copying bmtk/utils/scripts/pointnet/synaptic_models/ExcToExc.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/synaptic_models
> copying bmtk/utils/scripts/pointnet/synaptic_models/ExcToInh.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/synaptic_models
> copying bmtk/utils/scripts/pointnet/synaptic_models/InhToExc.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/synaptic_models
> copying bmtk/utils/scripts/pointnet/synaptic_models/InhToInh.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/synaptic_models
> copying bmtk/utils/scripts/pointnet/synaptic_models/instantaneousExc.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/synaptic_models
> copying bmtk/utils/scripts/pointnet/synaptic_models/instantaneousInh.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/synaptic_models
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/popnet
> copying bmtk/utils/scripts/popnet/run_popnet.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/popnet
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/popnet/population_models
> copying bmtk/utils/scripts/popnet/population_models/exc_model.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/popnet/population_models
> copying bmtk/utils/scripts/popnet/population_models/inh_model.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/popnet/population_models
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/popnet/synaptic_models
> copying bmtk/utils/scripts/popnet/synaptic_models/ExcToExc.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/popnet/synaptic_models
> copying bmtk/utils/scripts/popnet/synaptic_models/ExcToInh.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/popnet/synaptic_models
> copying bmtk/utils/scripts/popnet/synaptic_models/InhToExc.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/popnet/synaptic_models
> copying bmtk/utils/scripts/popnet/synaptic_models/InhToInh.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/popnet/synaptic_models
> copying bmtk/utils/scripts/popnet/synaptic_models/input_ExcToExc.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/popnet/synaptic_models
> copying bmtk/utils/scripts/popnet/synaptic_models/input_ExcToInh.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/popnet/synaptic_models
> copying bmtk/utils/sonata/config/config_schema.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/sonata/config
> copying bmtk/simulator/bionet/README.md -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/import3d.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/default_templates
> copying bmtk/simulator/bionet/default_templates/BioAxonStub.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/default_templates
> copying bmtk/simulator/bionet/default_templates/Biophys1.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/default_templates
> copying bmtk/simulator/bionet/default_templates/advance.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/default_templates
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/import3d
> copying bmtk/simulator/bionet/import3d/import3d_gui.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/import3d
> copying bmtk/simulator/bionet/import3d/import3d_sec.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/import3d
> copying bmtk/simulator/bionet/import3d/read_morphml.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/import3d
> copying bmtk/simulator/bionet/import3d/read_nlcda.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/import3d
> copying bmtk/simulator/bionet/import3d/read_nlcda3.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/import3d
> copying bmtk/simulator/bionet/import3d/read_nts.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/import3d
> copying bmtk/simulator/bionet/import3d/read_swc.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/import3d
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/schemas
> copying bmtk/simulator/bionet/schemas/config_schema.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/schemas
> copying bmtk/simulator/bionet/schemas/csv_edge_types.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/schemas
> copying bmtk/simulator/bionet/schemas/csv_node_types_external.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/schemas
> copying bmtk/simulator/bionet/schemas/csv_node_types_internal.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/schemas
> copying bmtk/simulator/bionet/schemas/csv_nodes_external.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/schemas
> copying bmtk/simulator/bionet/schemas/csv_nodes_internal.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/schemas
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core/sonata_schemas
> copying bmtk/simulator/core/sonata_schemas/config_schema.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core/sonata_schemas
> creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel/cell_metrics
> copying bmtk/simulator/filternet/lgnmodel/cell_metrics/sOFF_cell_data.csv -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel/cell_metrics
> copying bmtk/simulator/filternet/lgnmodel/cell_metrics/sON_cell_data.csv -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel/cell_metrics
> copying bmtk/simulator/filternet/lgnmodel/cell_metrics/sus_sus_cells_v3.csv -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel/cell_metrics
> copying bmtk/simulator/filternet/lgnmodel/cell_metrics/tOFF_cell_data.csv -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel/cell_metrics
> copying bmtk/simulator/filternet/lgnmodel/cell_metrics/tON_cell_data.csv -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel/cell_metrics
> copying bmtk/simulator/filternet/lgnmodel/cell_metrics/trans_sus_cells_v3.csv -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel/cell_metrics
> copying bmtk/simulator/core/modules/ndx-aibs-ecephys.extension.yaml -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core/modules
> copying bmtk/simulator/core/modules/ndx-aibs-ecephys.namespace.yaml -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core/modules
> sphinx-apidoc -f -o docs/autodocs/source/bmtk/ bmtk
> PYTHONPATH=. python3 -m sphinx -N -bhtml docs/autodocs/source/ build/html # HTML generator
> Running Sphinx v8.1.3
> loading translations [en]... done
> making output directory... done
> WARNING: html_static_path entry '/usr/share/javascript/requirejs/require.min.js' does not exist
> Converting `source_suffix = ['.rst', '.md']` to `source_suffix = {'.rst': 'restructuredtext', '.md': 'restructuredtext'}`.
> [autosummary] generating autosummary for: ad_tutorials.rst, analyzer.rst, bionet.rst, bionet_config.rst, bionet_tutorial.rst, bmtk/bmtk.analyzer.rst, bmtk/bmtk.builder.auxi.rst, bmtk/bmtk.builder.bionet.rst, bmtk/bmtk.builder.edges_sorter.rst, bmtk/bmtk.builder.network_adaptors.rst, ..., tutorial_filter_models.ipynb, tutorial_multi_pop.ipynb, tutorial_pointnet_modeling.ipynb, tutorial_population_modeling.ipynb, tutorial_single_cell_clamped.ipynb, tutorial_single_cell_syn.ipynb, tutorial_single_pop.ipynb, tutorial_spike_trains_refractory.ipynb, tutorials.rst, workshop.rst
> Matplotlib created a temporary cache directory at /tmp/matplotlib-k2ps2yxd because the default path (/sbuild-nonexistent/.config/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
> WARNING: Failed to import bmtk.tests.utils.reports.spike_trains.benchmark_spikes_buffers.
> Possible hints:
> * AttributeError: module 'bmtk.tests.utils.reports.spike_trains' has no attribute 'benchmark_spikes_buffers'
> * ModuleNotFoundError: No module named 'memory_profiler'
> numprocs=1
> WARNING: Failed to import bmtk.simulator.popnet.config.
> Possible hints:
> * AttributeError: module 'bmtk.simulator' has no attribute 'popnet'
> * ModuleNotFoundError: No module named 'dipde'
> WARNING: Failed to import bmtk.simulator.popnet.popedge.
> Possible hints:
> * AttributeError: module 'bmtk.simulator' has no attribute 'popnet'
> * ModuleNotFoundError: No module named 'dipde'
> WARNING: Failed to import bmtk.simulator.popnet.popnetwork.
> Possible hints:
> * AttributeError: module 'bmtk.simulator' has no attribute 'popnet'
> * ModuleNotFoundError: No module named 'dipde'
> WARNING: Failed to import bmtk.simulator.popnet.popnode.
> Possible hints:
> * AttributeError: module 'bmtk.simulator' has no attribute 'popnet'
> * ModuleNotFoundError: No module named 'dipde'
> WARNING: Failed to import bmtk.simulator.popnet.popsimulator.
> Possible hints:
> * AttributeError: module 'bmtk.simulator' has no attribute 'popnet'
> * ModuleNotFoundError: No module named 'dipde'
> WARNING: Failed to import bmtk.simulator.popnet.
> Possible hints:
> * AttributeError: module 'bmtk.simulator' has no attribute 'popnet'
> * ModuleNotFoundError: No module named 'dipde'
> NEURON mechanisms not found in /build/reproducible-path/bmtk-1.1.1+ds/bmtk/tests/simulator/bionet/components/mechanisms.
> NEURON mechanisms not found in components/mechanisms.
> NEURON mechanisms not found in components/mechanisms.
> NEURON mechanisms not found in bmtk/tests/simulator/bionet/components/mechanisms.
> Writing evaluated template result to /build/reproducible-path/bmtk-1.1.1+ds/build/html/_static/nbsphinx-code-cells.css
> building [mo]: targets for 0 po files that are out of date
> writing output... 
> building [html]: targets for 81 source files that are out of date
> updating environment: [new config] 81 added, 0 changed, 0 removed
> reading sources... [  1%] ad_tutorials
> reading sources... [  2%] analyzer
> reading sources... [  4%] bionet
> reading sources... [  5%] bionet_config
> reading sources... [  6%] bionet_tutorial
> reading sources... [  7%] bmtk/bmtk
> reading sources... [  9%] bmtk/bmtk.analyzer
> reading sources... [ 10%] bmtk/bmtk.builder
> reading sources... [ 11%] bmtk/bmtk.builder.auxi
> reading sources... [ 12%] bmtk/bmtk.builder.bionet
> reading sources... [ 14%] bmtk/bmtk.builder.edges_sorter
> reading sources... [ 15%] bmtk/bmtk.builder.network_adaptors
> reading sources... [ 16%] bmtk/bmtk.simulator
> reading sources... [ 17%] bmtk/bmtk.simulator.bionet
> reading sources... [ 19%] bmtk/bmtk.simulator.bionet.default_setters
> reading sources... [ 20%] bmtk/bmtk.simulator.bionet.modules
> reading sources... [ 21%] bmtk/bmtk.simulator.core
> reading sources... [ 22%] bmtk/bmtk.simulator.core.modules
> /usr/lib/python3/dist-packages/numpydoc/docscrape.py:421: UserWarning: Unknown section Input Parameters: in the docstring of IClampMod in /build/reproducible-path/bmtk-1.1.1+ds/bmtk/simulator/core/modules/iclamp.py.
>   self[section] = content
> reading sources... [ 23%] bmtk/bmtk.simulator.core.sonata_reader
> reading sources... [ 25%] bmtk/bmtk.simulator.filternet
> reading sources... [ 26%] bmtk/bmtk.simulator.filternet.default_setters
> reading sources... [ 27%] bmtk/bmtk.simulator.filternet.lgnmodel
> reading sources... [ 28%] bmtk/bmtk.simulator.filternet.modules
> reading sources... [ 30%] bmtk/bmtk.simulator.pointnet
> reading sources... [ 31%] bmtk/bmtk.simulator.pointnet.default_setters
> reading sources... [ 32%] bmtk/bmtk.simulator.pointnet.modules
> reading sources... [ 33%] bmtk/bmtk.simulator.popnet
> reading sources... [ 35%] bmtk/bmtk.simulator.utils
> reading sources... [ 36%] bmtk/bmtk.tests
> reading sources... [ 37%] bmtk/bmtk.tests.builder
> reading sources... [ 38%] bmtk/bmtk.tests.builder.auxi
> reading sources... [ 40%] bmtk/bmtk.tests.builder.bionet
> reading sources... [ 41%] bmtk/bmtk.tests.simulator
> reading sources... [ 42%] bmtk/bmtk.tests.simulator.bionet
> reading sources... [ 43%] bmtk/bmtk.tests.simulator.pointnet
> reading sources... [ 44%] bmtk/bmtk.tests.simulator.popnet
> reading sources... [ 46%] bmtk/bmtk.tests.utils
> reading sources... [ 47%] bmtk/bmtk.tests.utils.reports
> reading sources... [ 48%] bmtk/bmtk.tests.utils.reports.compartment
> reading sources... [ 49%] bmtk/bmtk.tests.utils.reports.spike_trains
> reading sources... [ 51%] bmtk/bmtk.tests.utils.sonata
> reading sources... [ 52%] bmtk/bmtk.utils
> reading sources... [ 53%] bmtk/bmtk.utils.cell_types_db
> reading sources... [ 54%] bmtk/bmtk.utils.compile_mechanisms
> reading sources... [ 56%] bmtk/bmtk.utils.create_environment
> reading sources... [ 57%] bmtk/bmtk.utils.io
> reading sources... [ 58%] bmtk/bmtk.utils.reports
> reading sources... [ 59%] bmtk/bmtk.utils.reports.compartment
> reading sources... [ 60%] bmtk/bmtk.utils.reports.spike_trains
> reading sources... [ 62%] bmtk/bmtk.utils.sonata
> reading sources... [ 63%] bmtk/bmtk.utils.sonata.config
> reading sources... [ 64%] bmtk/modules
> reading sources... [ 65%] builder
> reading sources... [ 67%] contributors
> reading sources... [ 68%] current_clamps
> reading sources... [ 69%] ecephys_probe
> reading sources... [ 70%] examples
> reading sources... [ 72%] filternet
> reading sources... [ 73%] how_to_cite
> reading sources... [ 74%] index
> reading sources... [ 75%] installation
> reading sources... [ 77%] network_file_formats
> reading sources... [ 78%] pointnet
> reading sources... [ 79%] popnet
> reading sources... [ 80%] registration
> reading sources... [ 81%] simulators
> reading sources... [ 83%] tutorial_NetworkBuilder_Intro
> reading sources... [ 84%] tutorial_auditory_filternet
> reading sources... [ 85%] tutorial_bionet_disconnected_sims
> reading sources... [ 86%] tutorial_cell_placement
> reading sources... [ 88%] tutorial_dynamic_synapses
> reading sources... [ 89%] tutorial_filter_models
> reading sources... [ 90%] tutorial_multi_pop
> reading sources... [ 91%] tutorial_pointnet_modeling
> reading sources... [ 93%] tutorial_population_modeling
> reading sources... [ 94%] tutorial_single_cell_clamped
> reading sources... [ 95%] tutorial_single_cell_syn
> reading sources... [ 96%] tutorial_single_pop
> reading sources... [ 98%] tutorial_spike_trains_refractory
> reading sources... [ 99%] tutorials
> reading sources... [100%] workshop
> 
> /build/reproducible-path/bmtk-1.1.1+ds/docs/autodocs/source/bionet.rst:2: WARNING: Duplicate explicit target name: "documentation". [docutils]
> /build/reproducible-path/bmtk-1.1.1+ds/bmtk/simulator/bionet/default_setters/cell_models.py:docstring of bmtk.simulator.bionet.default_setters.cell_models.loadHOC:2: WARNING: Inline emphasis start-string without end-string. [docutils]
> /build/reproducible-path/bmtk-1.1.1+ds/bmtk/simulator/bionet/modules/comsol.py:docstring of bmtk.simulator.bionet.modules.comsol.ComsolMod.initialize:4: ERROR: Unexpected indentation. [docutils]
> /build/reproducible-path/bmtk-1.1.1+ds/bmtk/simulator/bionet/modules/comsol.py:docstring of bmtk.simulator.bionet.modules.comsol.ComsolMod.initialize:7: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils]
> /build/reproducible-path/bmtk-1.1.1+ds/bmtk/simulator/bionet/modules/comsol.py:docstring of bmtk.simulator.bionet.modules.comsol.ComsolMod.initialize:11: ERROR: Unexpected indentation. [docutils]
> /build/reproducible-path/bmtk-1.1.1+ds/bmtk/simulator/bionet/modules/comsol.py:docstring of bmtk.simulator.bionet.modules.comsol.ComsolMod.step:4: ERROR: Unexpected indentation. [docutils]
> /build/reproducible-path/bmtk-1.1.1+ds/bmtk/simulator/bionet/modules/comsol.py:docstring of bmtk.simulator.bionet.modules.comsol.ComsolMod.step:10: ERROR: Unexpected indentation. [docutils]
> WARNING: autodoc: failed to import module 'popnet.config' from module 'bmtk.simulator'; the following exception was raised:
> No module named 'dipde' [autodoc.import_object]
> WARNING: autodoc: failed to import module 'popnet.popedge' from module 'bmtk.simulator'; the following exception was raised:
> No module named 'dipde' [autodoc.import_object]
> WARNING: autodoc: failed to import module 'popnet.popnetwork' from module 'bmtk.simulator'; the following exception was raised:
> No module named 'dipde' [autodoc.import_object]
> WARNING: autodoc: failed to import module 'popnet.popnode' from module 'bmtk.simulator'; the following exception was raised:
> No module named 'dipde' [autodoc.import_object]
> WARNING: autodoc: failed to import module 'popnet.popsimulator' from module 'bmtk.simulator'; the following exception was raised:
> No module named 'dipde' [autodoc.import_object]
> WARNING: autodoc: failed to import module 'popnet' from module 'bmtk.simulator'; the following exception was raised:
> No module named 'dipde' [autodoc.import_object]
> WARNING: autodoc: failed to import module 'benchmark_spikes_buffers' from module 'bmtk.tests.utils.reports.spike_trains'; the following exception was raised:
> No module named 'memory_profiler' [autodoc.import_object]
> /build/reproducible-path/bmtk-1.1.1+ds/docs/autodocs/source/how_to_cite.rst:32: WARNING: Line block ends without a blank line. [docutils]
> /build/reproducible-path/bmtk-1.1.1+ds/docs/autodocs/source/index.rst:8: WARNING: Duplicate explicit target name: "link". [docutils]
> /build/reproducible-path/bmtk-1.1.1+ds/docs/autodocs/source/installation.rst:2: WARNING: Duplicate explicit target name: "here". [docutils]
> /build/reproducible-path/bmtk-1.1.1+ds/docs/autodocs/source/pointnet.rst:2: WARNING: Duplicate explicit target name: "documentation". [docutils]
> looking for now-outdated files... none found
> pickling environment... done
> checking consistency... /build/reproducible-path/bmtk-1.1.1+ds/docs/autodocs/source/bmtk/modules.rst: WARNING: document isn't included in any toctree
> /build/reproducible-path/bmtk-1.1.1+ds/docs/autodocs/source/bmtk/bmtk.rst: document is referenced in multiple toctrees: ['bmtk/modules', 'index'], selecting: index <- bmtk/bmtk
> done
> preparing documents... done
> copying assets... 
> copying downloadable files... [100%] ../../_static/2022-07-Allen-Institute-Software-Modeling-Workshop.pdf
> 
> copying static files... 
> Writing evaluated template result to /build/reproducible-path/bmtk-1.1.1+ds/build/html/_static/documentation_options.js
> Writing evaluated template result to /build/reproducible-path/bmtk-1.1.1+ds/build/html/_static/basic.css
> Writing evaluated template result to /build/reproducible-path/bmtk-1.1.1+ds/build/html/_static/language_data.js
> Writing evaluated template result to /build/reproducible-path/bmtk-1.1.1+ds/build/html/_static/aibs_sphinx.css
> Writing evaluated template result to /build/reproducible-path/bmtk-1.1.1+ds/build/html/_static/aibs_sphinx.css
> copying static files: done
> copying extra files... 
> copying extra files: done
> copying assets: done
> writing output... [  1%] ad_tutorials
> writing output... [  2%] analyzer
> writing output... [  4%] bionet
> writing output... [  5%] bionet_config
> writing output... [  6%] bionet_tutorial
> writing output... [  7%] bmtk/bmtk
> writing output... [  9%] bmtk/bmtk.analyzer
> writing output... [ 10%] bmtk/bmtk.builder
> writing output... [ 11%] bmtk/bmtk.builder.auxi
> writing output... [ 12%] bmtk/bmtk.builder.bionet
> writing output... [ 14%] bmtk/bmtk.builder.edges_sorter
> writing output... [ 15%] bmtk/bmtk.builder.network_adaptors
> writing output... [ 16%] bmtk/bmtk.simulator
> writing output... [ 17%] bmtk/bmtk.simulator.bionet
> writing output... [ 19%] bmtk/bmtk.simulator.bionet.default_setters
> writing output... [ 20%] bmtk/bmtk.simulator.bionet.modules
> writing output... [ 21%] bmtk/bmtk.simulator.core
> writing output... [ 22%] bmtk/bmtk.simulator.core.modules
> writing output... [ 23%] bmtk/bmtk.simulator.core.sonata_reader
> writing output... [ 25%] bmtk/bmtk.simulator.filternet
> writing output... [ 26%] bmtk/bmtk.simulator.filternet.default_setters
> writing output... [ 27%] bmtk/bmtk.simulator.filternet.lgnmodel
> writing output... [ 28%] bmtk/bmtk.simulator.filternet.modules
> writing output... [ 30%] bmtk/bmtk.simulator.pointnet
> writing output... [ 31%] bmtk/bmtk.simulator.pointnet.default_setters
> writing output... [ 32%] bmtk/bmtk.simulator.pointnet.modules
> writing output... [ 33%] bmtk/bmtk.simulator.popnet
> writing output... [ 35%] bmtk/bmtk.simulator.utils
> writing output... [ 36%] bmtk/bmtk.tests
> writing output... [ 37%] bmtk/bmtk.tests.builder
> writing output... [ 38%] bmtk/bmtk.tests.builder.auxi
> writing output... [ 40%] bmtk/bmtk.tests.builder.bionet
> writing output... [ 41%] bmtk/bmtk.tests.simulator
> writing output... [ 42%] bmtk/bmtk.tests.simulator.bionet
> writing output... [ 43%] bmtk/bmtk.tests.simulator.pointnet
> writing output... [ 44%] bmtk/bmtk.tests.simulator.popnet
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> /build/reproducible-path/bmtk-1.1.1+ds/docs/autodocs/source/tutorial_bionet_disconnected_sims.ipynb:923: WARNING: Lexing literal_block '{\n  "inputs": {\n    "replay_edges_1": {\n      "input_type": "replay_spikes",\n      "module": "replay",\n      ...\n    }\n    "replay_edges_2": {\n      "input_type": "replay_spikes",\n      "module": "replay",\n      ...\n    }\n  }\n}' as "json" resulted in an error at token: '.'. Retrying in relaxed mode. [misc.highlighting_failure]
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> 
> dumping search index in English (code: en)... done
> dumping object inventory... done
> build succeeded, 28 warnings.
> 
> The HTML pages are in build/html.
> make[1]: Leaving directory '/build/reproducible-path/bmtk-1.1.1+ds'
>    dh_auto_test -O--buildsystem=pybuild
> I: pybuild pybuild:308: cp -r /build/reproducible-path/bmtk-1.1.1+ds/bmtk/tests /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/
> I: pybuild base:311: cd /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build; python3.12 -m pytest 
> ============================= test session starts ==============================
> platform linux -- Python 3.12.8, pytest-8.3.4, pluggy-1.5.0
> rootdir: /build/reproducible-path/bmtk-1.1.1+ds
> plugins: typeguard-4.4.1
> collected 361 items / 5 skipped
> 
> bmtk/tests/builder/auxi/test_edge_connectors.py ..                       [  0%]
> bmtk/tests/builder/auxi/test_node_params.py ......s                      [  2%]
> bmtk/tests/builder/test_connection_map.py .......                        [  4%]
> bmtk/tests/builder/test_connector.py .....                               [  5%]
> bmtk/tests/builder/test_densenetwork.py ...                              [  6%]
> bmtk/tests/builder/test_edge_iterator.py ...                             [  7%]
> bmtk/tests/builder/test_edges_sorter.py ...                              [  8%]
> bmtk/tests/builder/test_id_generator.py ......                           [  9%]
> bmtk/tests/builder/test_index_builders.py ..                             [ 10%]
> bmtk/tests/builder/test_iterator.py ........                             [ 12%]
> bmtk/tests/builder/test_network.py ............                          [ 16%]
> bmtk/tests/builder/test_network_mpi.py ssssssss                          [ 18%]
> bmtk/tests/builder/test_node_pool.py .....                               [ 19%]
> bmtk/tests/builder/test_node_set.py ...                                  [ 20%]
> bmtk/tests/builder/test_save_network.py ......                           [ 22%]
> bmtk/tests/simulator/bionet/test_biograph.py ss                          [ 22%]
> bmtk/tests/simulator/bionet/test_gids.py s                               [ 22%]
> bmtk/tests/simulator/bionet/test_nrn.py sssssss                          [ 24%]
> bmtk/tests/simulator/core/test_ecephys_module.py sssssss                 [ 26%]
> bmtk/tests/simulator/core/test_iclamp.py .....                           [ 28%]
> bmtk/tests/simulator/core/test_io_tools.py ..                            [ 28%]
> bmtk/tests/simulator/core/test_pyfunction_cache.py ......                [ 30%]
> bmtk/tests/simulator/core/test_simulation_config.py ..                   [ 31%]
> bmtk/tests/simulator/core/test_simulation_config_validator.py ...        [ 31%]
> bmtk/tests/simulator/filternet/lgnmodel/test_kernels.py ...              [ 32%]
> bmtk/tests/simulator/filternet/lgnmodel/test_movie.py .....              [ 34%]
> bmtk/tests/simulator/filternet/lgnmodel/test_subclass_metrics.py ......  [ 35%]
> bmtk/tests/simulator/filternet/lgnmodel/test_transferfunction.py .       [ 36%]
> bmtk/tests/simulator/filternet/lgnmodel/test_units.py ....               [ 37%]
> bmtk/tests/simulator/filternet/lgnmodel/test_utils.py .                  [ 37%]
> bmtk/tests/simulator/filternet/test_default_setters.py ................. [ 42%]
> .                                                                        [ 42%]
> bmtk/tests/simulator/filternet/test_filternet_movies.py .                [ 42%]
> bmtk/tests/simulator/pointnet/test_multimeter_report.py ssss             [ 43%]
> bmtk/tests/simulator/pointnet/test_pointgraph.py ss                      [ 44%]
> bmtk/tests/simulator/pointnet/test_pointnetwork.py sssssssssssssssss     [ 49%]
> bmtk/tests/simulator/popnet/test_popgraph.py s                           [ 49%]
> bmtk/tests/simulator/utils/test_simulation_inputs.py .....               [ 50%]
> bmtk/tests/simulator/utils/test_simulation_reports.py ....               [ 51%]
> bmtk/tests/utils/reports/compartment/test_compartment_reader.py ..       [ 52%]
> bmtk/tests/utils/reports/compartment/test_compartment_writer.py ......   [ 54%]
> bmtk/tests/utils/reports/compartment/test_plotting.py .........          [ 56%]
> bmtk/tests/utils/reports/spike_trains/test_csv_adaptor.py .............. [ 60%]
>                                                                          [ 60%]
> bmtk/tests/utils/reports/spike_trains/test_csv_adaptor_mpi.py .......... [ 63%]
> ......                                                                   [ 64%]
> bmtk/tests/utils/reports/spike_trains/test_plotting.py ................. [ 69%]
> ...                                                                      [ 70%]
> bmtk/tests/utils/reports/spike_trains/test_sonata_adaptor.py ........... [ 73%]
> ................                                                         [ 77%]
> bmtk/tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py ....... [ 79%]
> .............                                                            [ 83%]
> bmtk/tests/utils/reports/spike_trains/test_spikes_buffer.py ............ [ 86%]
> ......                                                                   [ 88%]
> bmtk/tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py ........ [ 90%]
> ........                                                                 [ 92%]
> bmtk/tests/utils/reports/spike_trains/test_spikes_core.py .....          [ 94%]
> bmtk/tests/utils/sonata/test_config.py ...........                       [ 97%]
> bmtk/tests/utils/sonata/test_config_validator.py ....                    [ 98%]
> bmtk/tests/utils/sonata/test_edge_stats.py ......                        [100%]
> 
> =============================== warnings summary ===============================
> .pybuild/cpython3_3.12/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
> .pybuild/cpython3_3.12/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
> .pybuild/cpython3_3.12/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
> .pybuild/cpython3_3.12/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
> .pybuild/cpython3_3.12/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
> .pybuild/cpython3_3.12/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
>   /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder/index_builders.py:205: FutureWarning: Series.fillna with 'method' is deprecated and will raise in a future version. Use obj.ffill() or obj.bfill() instead.
>     i2r_table_df['range_end'] = i2r_table_df['range_end'].fillna(method='ffill')
> 
> .pybuild/cpython3_3.12/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
> .pybuild/cpython3_3.12/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
> .pybuild/cpython3_3.12/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
> .pybuild/cpython3_3.12/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
> .pybuild/cpython3_3.12/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
> .pybuild/cpython3_3.12/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
>   /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder/index_builders.py:206: FutureWarning: A value is trying to be set on a copy of a DataFrame or Series through chained assignment using an inplace method.
>   The behavior will change in pandas 3.0. This inplace method will never work because the intermediate object on which we are setting values always behaves as a copy.
>   
>   For example, when doing 'df[col].method(value, inplace=True)', try using 'df.method({col: value}, inplace=True)' or df[col] = df[col].method(value) instead, to perform the operation inplace on the original object.
>   
>   
>     i2r_table_df['range_end'].fillna(0, inplace=True)
> 
> .pybuild/cpython3_3.12/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
> .pybuild/cpython3_3.12/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
> .pybuild/cpython3_3.12/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
> .pybuild/cpython3_3.12/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
> .pybuild/cpython3_3.12/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
> .pybuild/cpython3_3.12/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
>   /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder/index_builders.py:209: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0!
>   You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy.
>   A typical example is when you are setting values in a column of a DataFrame, like:
>   
>   df["col"][row_indexer] = value
>   
>   Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`.
>   
>   See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy
>   
>     i2r_table_df['range_beg'][nans_mask] = i2r_table_df['range_end'][nans_mask]
> 
> .pybuild/cpython3_3.12/build/bmtk/tests/simulator/core/test_simulation_config_validator.py::test_validate_network
>   /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core/simulation_config_validator.py:30: DeprecationWarning: Subclassing validator classes is not intended to be part of their public API. A future version will make doing so an error, as the behavior of subclasses isn't guaranteed to stay the same between releases of jsonschema. Instead, prefer composition of validators, wrapping them in an object owned entirely by the downstream library.
>     class SimulationConfigValidator(Draft4Validator):
> 
> .pybuild/cpython3_3.12/build/bmtk/tests/simulator/filternet/lgnmodel/test_subclass_metrics.py::test_get_data_metrics[sus_sus-expected_val4]
> .pybuild/cpython3_3.12/build/bmtk/tests/simulator/filternet/lgnmodel/test_subclass_metrics.py::test_get_data_metrics[trans_sus-expected_val5]
>   /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel/cellmetrics.py:57: FutureWarning: The behavior of DataFrame.idxmax with all-NA values, or any-NA and skipna=False, is deprecated. In a future version this will raise ValueError
>     exp_df['max_tf'] = sub_df.idxmax(axis=1).values  # sub_df.idxmax(axis=1)
> 
> .pybuild/cpython3_3.12/build/bmtk/tests/utils/sonata/test_edge_stats.py::test_edge_props_distribution
> .pybuild/cpython3_3.12/build/bmtk/tests/utils/sonata/test_edge_stats.py::test_edge_props_distribution
> .pybuild/cpython3_3.12/build/bmtk/tests/utils/sonata/test_edge_stats.py::test_edge_props_distribution
> .pybuild/cpython3_3.12/build/bmtk/tests/utils/sonata/test_edge_stats.py::test_edge_props_distribution
> .pybuild/cpython3_3.12/build/bmtk/tests/utils/sonata/test_edge_stats.py::test_nsyns_distribution
> .pybuild/cpython3_3.12/build/bmtk/tests/utils/sonata/test_edge_stats.py::test_nsyns_distribution
> .pybuild/cpython3_3.12/build/bmtk/tests/utils/sonata/test_edge_stats.py::test_nsyns_distribution
>   /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/sonata/edge_stats.py:282: FutureWarning: Downcasting object dtype arrays on .fillna, .ffill, .bfill is deprecated and will change in a future version. Call result.infer_objects(copy=False) instead. To opt-in to the future behavior, set `pd.set_option('future.no_silent_downcasting', True)`
>     edges_df[edge_prop] = fill_val if edge_prop not in edges_df.columns else edges_df[edge_prop].fillna(fill_val)
> 
> .pybuild/cpython3_3.12/build/bmtk/tests/utils/sonata/test_edge_stats.py::test_edge_stats_table
>   /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/sonata/edge_stats.py:434: FutureWarning: Downcasting object dtype arrays on .fillna, .ffill, .bfill is deprecated and will change in a future version. Call result.infer_objects(copy=False) instead. To opt-in to the future behavior, set `pd.set_option('future.no_silent_downcasting', True)`
>     edges_df['nsyns'] = 1 if 'nsyns' not in edges_df.columns else edges_df['nsyns'].fillna(1)
> 
> -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
> ================ 311 passed, 55 skipped, 29 warnings in 17.97s =================
> I: pybuild pybuild:308: cp -r /build/reproducible-path/bmtk-1.1.1+ds/bmtk/tests /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/
> I: pybuild base:311: cd /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build; python3.13 -m pytest 
> ============================= test session starts ==============================
> platform linux -- Python 3.13.1, pytest-8.3.4, pluggy-1.5.0
> rootdir: /build/reproducible-path/bmtk-1.1.1+ds
> plugins: typeguard-4.4.1
> NEURON mechanisms not found in /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/tests/simulator/bionet/components/mechanisms.
> collected 399 items / 1 skipped
> 
> bmtk/tests/builder/auxi/test_edge_connectors.py ..                       [  0%]
> bmtk/tests/builder/auxi/test_node_params.py ......s                      [  2%]
> bmtk/tests/builder/bionet/test_swc_reader.py s                           [  2%]
> bmtk/tests/builder/test_connection_map.py .......                        [  4%]
> bmtk/tests/builder/test_connector.py .....                               [  5%]
> bmtk/tests/builder/test_densenetwork.py ...                              [  6%]
> bmtk/tests/builder/test_edge_iterator.py ...                             [  7%]
> bmtk/tests/builder/test_edges_sorter.py ...                              [  7%]
> bmtk/tests/builder/test_id_generator.py ......                           [  9%]
> bmtk/tests/builder/test_index_builders.py ..                             [  9%]
> bmtk/tests/builder/test_iterator.py ........                             [ 11%]
> bmtk/tests/builder/test_network.py ............                          [ 14%]
> bmtk/tests/builder/test_network_mpi.py ssssssss                          [ 16%]
> bmtk/tests/builder/test_node_pool.py .....                               [ 18%]
> bmtk/tests/builder/test_node_set.py ...                                  [ 18%]
> bmtk/tests/builder/test_save_network.py ......                           [ 20%]
> bmtk/tests/simulator/bionet/test_biograph.py ss                          [ 20%]
> bmtk/tests/simulator/bionet/test_gids.py .                               [ 21%]
> bmtk/tests/simulator/bionet/test_iclamp.py ..................            [ 25%]
> bmtk/tests/simulator/bionet/test_morphology.py F.FFFs..FF                [ 28%]
> bmtk/tests/simulator/bionet/test_nrn.py ....sss                          [ 29%]
> bmtk/tests/simulator/bionet/test_virtualcell.py sssssssss                [ 32%]
> bmtk/tests/simulator/core/test_ecephys_module.py sssssss                 [ 33%]
> bmtk/tests/simulator/core/test_iclamp.py .....                           [ 35%]
> bmtk/tests/simulator/core/test_io_tools.py ..                            [ 35%]
> bmtk/tests/simulator/core/test_pyfunction_cache.py ......                [ 37%]
> bmtk/tests/simulator/core/test_simulation_config.py ..                   [ 37%]
> bmtk/tests/simulator/core/test_simulation_config_validator.py ...        [ 38%]
> bmtk/tests/simulator/filternet/lgnmodel/test_kernels.py ...              [ 39%]
> bmtk/tests/simulator/filternet/lgnmodel/test_movie.py .....              [ 40%]
> bmtk/tests/simulator/filternet/lgnmodel/test_subclass_metrics.py ......  [ 41%]
> bmtk/tests/simulator/filternet/lgnmodel/test_transferfunction.py .       [ 42%]
> bmtk/tests/simulator/filternet/lgnmodel/test_units.py ....               [ 43%]
> bmtk/tests/simulator/filternet/lgnmodel/test_utils.py .                  [ 43%]
> bmtk/tests/simulator/filternet/test_default_setters.py ................. [ 47%]
> .                                                                        [ 47%]
> bmtk/tests/simulator/filternet/test_filternet_movies.py .                [ 48%]
> bmtk/tests/simulator/pointnet/test_multimeter_report.py ssss             [ 49%]
> bmtk/tests/simulator/pointnet/test_pointgraph.py ss                      [ 49%]
> bmtk/tests/simulator/pointnet/test_pointnetwork.py sssssssssssssssss     [ 53%]
> bmtk/tests/simulator/popnet/test_popgraph.py s                           [ 54%]
> bmtk/tests/simulator/utils/test_simulation_inputs.py .....               [ 55%]
> bmtk/tests/simulator/utils/test_simulation_reports.py ....               [ 56%]
> bmtk/tests/utils/reports/compartment/test_compartment_reader.py ..       [ 56%]
> bmtk/tests/utils/reports/compartment/test_compartment_writer.py ......   [ 58%]
> bmtk/tests/utils/reports/compartment/test_plotting.py .........          [ 60%]
> bmtk/tests/utils/reports/spike_trains/test_csv_adaptor.py .............. [ 64%]
>                                                                          [ 64%]
> bmtk/tests/utils/reports/spike_trains/test_csv_adaptor_mpi.py .......... [ 66%]
> ......                                                                   [ 68%]
> bmtk/tests/utils/reports/spike_trains/test_plotting.py ................. [ 72%]
> ...                                                                      [ 73%]
> bmtk/tests/utils/reports/spike_trains/test_sonata_adaptor.py ........... [ 75%]
> ................                                                         [ 79%]
> bmtk/tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py ....... [ 81%]
> .............                                                            [ 84%]
> bmtk/tests/utils/reports/spike_trains/test_spikes_buffer.py ............ [ 87%]
> ......                                                                   [ 89%]
> bmtk/tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py ........ [ 91%]
> ........                                                                 [ 93%]
> bmtk/tests/utils/reports/spike_trains/test_spikes_core.py .....          [ 94%]
> bmtk/tests/utils/sonata/test_config.py ...........                       [ 97%]
> bmtk/tests/utils/sonata/test_config_validator.py ....                    [ 98%]
> bmtk/tests/utils/sonata/test_edge_stats.py ......                        [100%]
> 
> =================================== FAILURES ===================================
> __________________________________ test_base ___________________________________
> 
>     @pytest.mark.skipif(not has_mechanism, reason='Mechanisms has not been compiled, run nrnivmodl mechanisms.')
>     @pytest.mark.skipif(not nrn_installed, reason='NEURON is not installed')
>     def test_base():
>         hobj = load_hobj()
>         morph = Morphology(hobj)
>     
>         assert(morph.nseg == 87)
>         assert(len(morph.seg_props.type) == 87)
>         assert(len(morph.seg_props.area) == 87)
>         assert(len(morph.seg_props.x) == 87)
>         assert(len(morph.seg_props.dist) == 87)
>         assert(len(morph.seg_props.length) == 87)
>         assert(morph.seg_props.type[0] == 1 and morph.seg_props.type[1] == 2)
>         assert(np.isclose(morph.seg_props.area[0], 425.756, atol=1.0e-2))
>         assert(morph.seg_props.x[0] == 0.5)
>         assert(np.isclose(morph.seg_props.dist[0], 5.82, atol=1.0e-2))
>         assert(np.isclose(morph.seg_props.length[0], 11.64, atol=1.0e-2))
>     
> >       assert(isinstance(morph.seg_coords.p0, np.ndarray) and morph.seg_coords.p0.shape == (3, 87))
> 
> bmtk/tests/simulator/bionet/test_morphology.py:67: 
> _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
> bmtk/simulator/bionet/morphology.py:311: in seg_coords
>     return self._seg_coords.get()
> _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
> 
> self = <bmtk.simulator.bionet.morphology._LazySegmentCoords object at 0x7fe2cea82900>
> 
>     def get(self):
>         if self.p0 is None:
>             # Iterates through each segment (one section may contain one or more segments). We use NEURON's
>             # segment.x to get the mid-point and lenght of each segment we we can use to find and store the beginning
>             # (p0) and end (p1) of each segment. We also shift so the middle of the soma is at the origin.
> >           nseg = np.sum([s.nseg for s in self._hobj.all])
> E           TypeError: Not an iterable HocObject
> 
> bmtk/simulator/bionet/morphology.py:117: TypeError
> __________________________________ test_full ___________________________________
> 
>     @pytest.mark.skipif(not has_mechanism, reason='Mechanisms has not been compiled, run nrnivmodl mechanisms.')
>     @pytest.mark.skipif(not nrn_installed, reason='NEURON is not installed')
>     def test_full():
>         hobj = load_hobj()
>         fix_axon_peri(hobj)
>     
>         morph = Morphology(hobj)
>         morph.set_segment_dl(20.0)
> >       morph = morph.move_and_rotate(
>             soma_coords=[100.0, -100.0, 0.0],
>             rotation_angles=[90.0, 180.0, 0.0]
>         )
> 
> bmtk/tests/simulator/bionet/test_morphology.py:114: 
> _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
> bmtk/simulator/bionet/morphology.py:422: in move_and_rotate
>     old_seg_coords = self.seg_coords
> bmtk/simulator/bionet/morphology.py:311: in seg_coords
>     return self._seg_coords.get()
> _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
> 
> self = <bmtk.simulator.bionet.morphology._LazySegmentCoords object at 0x7fe2ce865250>
> 
>     def get(self):
>         if self.p0 is None:
>             # Iterates through each segment (one section may contain one or more segments). We use NEURON's
>             # segment.x to get the mid-point and lenght of each segment we we can use to find and store the beginning
>             # (p0) and end (p1) of each segment. We also shift so the middle of the soma is at the origin.
> >           nseg = np.sum([s.nseg for s in self._hobj.all])
> E           TypeError: Not an iterable HocObject
> 
> bmtk/simulator/bionet/morphology.py:117: TypeError
> ________________________________ test_multicell ________________________________
> 
>     @pytest.mark.skipif(not has_mechanism, reason='Mechanisms has not been compiled, run nrnivmodl mechanisms.')
>     @pytest.mark.skipif(not nrn_installed, reason='NEURON is not installed')
>     def test_multicell():
>         hobj = load_hobj()
>         fix_axon_peri(hobj)
>     
>         morph = Morphology(hobj)
>         morph.set_segment_dl(20.0)
> >       morph1 = morph.move_and_rotate(
>             soma_coords=[0.0, 100.0, 0.0],
>             rotation_angles=[0.0, 0.0, 0.0]
>         )
> 
> bmtk/tests/simulator/bionet/test_morphology.py:149: 
> _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
> bmtk/simulator/bionet/morphology.py:422: in move_and_rotate
>     old_seg_coords = self.seg_coords
> bmtk/simulator/bionet/morphology.py:311: in seg_coords
>     return self._seg_coords.get()
> _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
> 
> self = <bmtk.simulator.bionet.morphology._LazySegmentCoords object at 0x7fe2ce885040>
> 
>     def get(self):
>         if self.p0 is None:
>             # Iterates through each segment (one section may contain one or more segments). We use NEURON's
>             # segment.x to get the mid-point and lenght of each segment we we can use to find and store the beginning
>             # (p0) and end (p1) of each segment. We also shift so the middle of the soma is at the origin.
> >           nseg = np.sum([s.nseg for s in self._hobj.all])
> E           TypeError: Not an iterable HocObject
> 
> bmtk/simulator/bionet/morphology.py:117: TypeError
> ______________________________ test_find_sections ______________________________
> 
>     @pytest.mark.skipif(not has_mechanism, reason='Mechanisms has not been compiled, run nrnivmodl mechanisms.')
>     @pytest.mark.skipif(not nrn_installed, reason='NEURON is not installed')
>     def test_find_sections():
>         hobj = load_hobj()
>         fix_axon_peri(hobj)
>     
>         morph = Morphology(hobj)
>         morph.set_segment_dl(20.0)
> >       morph = morph.move_and_rotate(
>             soma_coords=[100.0, -100.0, 0.0],
>             rotation_angles=[90.0, 180.0, 0.0]
>         )
> 
> bmtk/tests/simulator/bionet/test_morphology.py:204: 
> _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
> bmtk/simulator/bionet/morphology.py:422: in move_and_rotate
>     old_seg_coords = self.seg_coords
> bmtk/simulator/bionet/morphology.py:311: in seg_coords
>     return self._seg_coords.get()
> _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
> 
> self = <bmtk.simulator.bionet.morphology._LazySegmentCoords object at 0x7fe2ce8859d0>
> 
>     def get(self):
>         if self.p0 is None:
>             # Iterates through each segment (one section may contain one or more segments). We use NEURON's
>             # segment.x to get the mid-point and lenght of each segment we we can use to find and store the beginning
>             # (p0) and end (p1) of each segment. We also shift so the middle of the soma is at the origin.
> >           nseg = np.sum([s.nseg for s in self._hobj.all])
> E           TypeError: Not an iterable HocObject
> 
> bmtk/simulator/bionet/morphology.py:117: TypeError
> _____________________________ test_move_and_rotate _____________________________
> 
>     @pytest.mark.skipif(not has_mechanism, reason='Mechanisms has not been compiled, run nrnivmodl mechanisms.')
>     @pytest.mark.skipif(not nrn_installed, reason='NEURON is not installed')
>     def test_move_and_rotate():
>         hobj = load_hobj()
>         # fix_axon_peri(hobj)
>     
>         morph1 = Morphology(hobj)
>     
> >       morph2 = morph1.move_and_rotate(
>             soma_coords=[100.0, -100.0, 0.0],
>             rotation_angles=[90.0, 180.0, 0.0],
>             inplace=False
>         )
> 
> bmtk/tests/simulator/bionet/test_morphology.py:361: 
> _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
> bmtk/simulator/bionet/morphology.py:422: in move_and_rotate
>     old_seg_coords = self.seg_coords
> bmtk/simulator/bionet/morphology.py:311: in seg_coords
>     return self._seg_coords.get()
> _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
> 
> self = <bmtk.simulator.bionet.morphology._LazySegmentCoords object at 0x7fe2ce754bb0>
> 
>     def get(self):
>         if self.p0 is None:
>             # Iterates through each segment (one section may contain one or more segments). We use NEURON's
>             # segment.x to get the mid-point and lenght of each segment we we can use to find and store the beginning
>             # (p0) and end (p1) of each segment. We also shift so the middle of the soma is at the origin.
> >           nseg = np.sum([s.nseg for s in self._hobj.all])
> E           TypeError: Not an iterable HocObject
> 
> bmtk/simulator/bionet/morphology.py:117: TypeError
> _________________________ test_move_and_rotate_cached __________________________
> 
>     @pytest.mark.skipif(not has_mechanism, reason='Mechanisms has not been compiled, run nrnivmodl mechanisms.')
>     @pytest.mark.skipif(not nrn_installed, reason='NEURON is not installed')
>     def test_move_and_rotate_cached():
>         hobj = load_hobj()
>         morph1 = Morphology.load(hobj, morphology_file=RORB_SWC_PATH, cache_seg_props=True)
>         morph2 = Morphology.load(hobj, morphology_file=RORB_SWC_PATH, cache_seg_props=True)
>     
>         # initially morph1 and morph2 share the same SegmentCoords object, make sure after a move_and_rotate is done
>         # the two morphology has different coordinates
> >       assert(morph1.seg_coords == morph2.seg_coords)
> 
> bmtk/tests/simulator/bionet/test_morphology.py:409: 
> _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
> bmtk/simulator/bionet/morphology.py:311: in seg_coords
>     return self._seg_coords.get()
> _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
> 
> self = <bmtk.simulator.bionet.morphology._LazySegmentCoords object at 0x7fe2ce80cb90>
> 
>     def get(self):
>         if self.p0 is None:
>             # Iterates through each segment (one section may contain one or more segments). We use NEURON's
>             # segment.x to get the mid-point and lenght of each segment we we can use to find and store the beginning
>             # (p0) and end (p1) of each segment. We also shift so the middle of the soma is at the origin.
> >           nseg = np.sum([s.nseg for s in self._hobj.all])
> E           TypeError: Not an iterable HocObject
> 
> bmtk/simulator/bionet/morphology.py:117: TypeError
> =============================== warnings summary ===============================
> .pybuild/cpython3_3.13/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
> .pybuild/cpython3_3.13/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
> .pybuild/cpython3_3.13/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
> .pybuild/cpython3_3.13/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
> .pybuild/cpython3_3.13/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
> .pybuild/cpython3_3.13/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
>   /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder/index_builders.py:205: FutureWarning: Series.fillna with 'method' is deprecated and will raise in a future version. Use obj.ffill() or obj.bfill() instead.
>     i2r_table_df['range_end'] = i2r_table_df['range_end'].fillna(method='ffill')
> 
> .pybuild/cpython3_3.13/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
> .pybuild/cpython3_3.13/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
> .pybuild/cpython3_3.13/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
> .pybuild/cpython3_3.13/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
> .pybuild/cpython3_3.13/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
> .pybuild/cpython3_3.13/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
>   /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder/index_builders.py:206: FutureWarning: A value is trying to be set on a copy of a DataFrame or Series through chained assignment using an inplace method.
>   The behavior will change in pandas 3.0. This inplace method will never work because the intermediate object on which we are setting values always behaves as a copy.
>   
>   For example, when doing 'df[col].method(value, inplace=True)', try using 'df.method({col: value}, inplace=True)' or df[col] = df[col].method(value) instead, to perform the operation inplace on the original object.
>   
>   
>     i2r_table_df['range_end'].fillna(0, inplace=True)
> 
> .pybuild/cpython3_3.13/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
> .pybuild/cpython3_3.13/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
> .pybuild/cpython3_3.13/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
> .pybuild/cpython3_3.13/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
> .pybuild/cpython3_3.13/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
> .pybuild/cpython3_3.13/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
>   /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder/index_builders.py:209: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0!
>   You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy.
>   A typical example is when you are setting values in a column of a DataFrame, like:
>   
>   df["col"][row_indexer] = value
>   
>   Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`.
>   
>   See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy
>   
>     i2r_table_df['range_beg'][nans_mask] = i2r_table_df['range_end'][nans_mask]
> 
> .pybuild/cpython3_3.13/build/bmtk/tests/simulator/core/test_simulation_config_validator.py::test_validate_network
>   /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core/simulation_config_validator.py:30: DeprecationWarning: Subclassing validator classes is not intended to be part of their public API. A future version will make doing so an error, as the behavior of subclasses isn't guaranteed to stay the same between releases of jsonschema. Instead, prefer composition of validators, wrapping them in an object owned entirely by the downstream library.
>     class SimulationConfigValidator(Draft4Validator):
> 
> .pybuild/cpython3_3.13/build/bmtk/tests/simulator/filternet/lgnmodel/test_subclass_metrics.py::test_get_data_metrics[sus_sus-expected_val4]
> .pybuild/cpython3_3.13/build/bmtk/tests/simulator/filternet/lgnmodel/test_subclass_metrics.py::test_get_data_metrics[trans_sus-expected_val5]
>   /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel/cellmetrics.py:57: FutureWarning: The behavior of DataFrame.idxmax with all-NA values, or any-NA and skipna=False, is deprecated. In a future version this will raise ValueError
>     exp_df['max_tf'] = sub_df.idxmax(axis=1).values  # sub_df.idxmax(axis=1)
> 
> .pybuild/cpython3_3.13/build/bmtk/tests/utils/sonata/test_edge_stats.py::test_edge_props_distribution
> .pybuild/cpython3_3.13/build/bmtk/tests/utils/sonata/test_edge_stats.py::test_edge_props_distribution
> .pybuild/cpython3_3.13/build/bmtk/tests/utils/sonata/test_edge_stats.py::test_edge_props_distribution
> .pybuild/cpython3_3.13/build/bmtk/tests/utils/sonata/test_edge_stats.py::test_edge_props_distribution
> .pybuild/cpython3_3.13/build/bmtk/tests/utils/sonata/test_edge_stats.py::test_nsyns_distribution
> .pybuild/cpython3_3.13/build/bmtk/tests/utils/sonata/test_edge_stats.py::test_nsyns_distribution
> .pybuild/cpython3_3.13/build/bmtk/tests/utils/sonata/test_edge_stats.py::test_nsyns_distribution
>   /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/sonata/edge_stats.py:282: FutureWarning: Downcasting object dtype arrays on .fillna, .ffill, .bfill is deprecated and will change in a future version. Call result.infer_objects(copy=False) instead. To opt-in to the future behavior, set `pd.set_option('future.no_silent_downcasting', True)`
>     edges_df[edge_prop] = fill_val if edge_prop not in edges_df.columns else edges_df[edge_prop].fillna(fill_val)
> 
> .pybuild/cpython3_3.13/build/bmtk/tests/utils/sonata/test_edge_stats.py::test_edge_stats_table
>   /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/sonata/edge_stats.py:434: FutureWarning: Downcasting object dtype arrays on .fillna, .ffill, .bfill is deprecated and will change in a future version. Call result.infer_objects(copy=False) instead. To opt-in to the future behavior, set `pd.set_option('future.no_silent_downcasting', True)`
>     edges_df['nsyns'] = 1 if 'nsyns' not in edges_df.columns else edges_df['nsyns'].fillna(1)
> 
> -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
> =========================== short test summary info ============================
> FAILED bmtk/tests/simulator/bionet/test_morphology.py::test_base - TypeError:...
> FAILED bmtk/tests/simulator/bionet/test_morphology.py::test_full - TypeError:...
> FAILED bmtk/tests/simulator/bionet/test_morphology.py::test_multicell - TypeE...
> FAILED bmtk/tests/simulator/bionet/test_morphology.py::test_find_sections - T...
> FAILED bmtk/tests/simulator/bionet/test_morphology.py::test_move_and_rotate
> FAILED bmtk/tests/simulator/bionet/test_morphology.py::test_move_and_rotate_cached
> =========== 6 failed, 337 passed, 57 skipped, 29 warnings in 19.80s ============
> E: pybuild pybuild:389: test: plugin distutils failed with: exit code=1: cd /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build; python3.13 -m pytest 
> dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.12 3.13" returned exit code 13


The full build log is available from:
http://qa-logs.debian.net/2025/01/07/bmtk_1.1.1+ds-3_unstable.log

All bugs filed during this archive rebuild are listed at:
https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20250107;users=lucas@debian.org
or:
https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20250107&fusertaguser=lucas@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results

A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects

If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.