[Debian-med-packaging] Bug#1100273: python-mne: FTBFS: failing tests

[Santiago Vila]

Package: src:python-mne
Version: 1.9.0-1
Severity: serious
Tags: ftbfs trixie sid

Dear maintainer:

During a rebuild of all packages in unstable, your package failed to build:

--------------------------------------------------------------------------------
[...]
 debian/rules clean
dh clean --buildsystem pybuild
   dh_auto_clean -O--buildsystem=pybuild
   dh_autoreconf_clean -O--buildsystem=pybuild
   debian/rules execute_before_dh_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
rm -rf *.egg-info
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_clean -O--buildsystem=pybuild
 debian/rules binary
dh binary --buildsystem pybuild
   dh_update_autotools_config -O--buildsystem=pybuild
   dh_autoreconf -O--buildsystem=pybuild
   dh_auto_configure -O--buildsystem=pybuild

[... snipped ...]

SKIPPED [1] mne/io/kit/tests/test_kit.py:435: Requires testing dataset
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SKIPPED [2] mne/io/nirx/tests/test_nirx.py:60: could not import 'h5py': No module named 'h5py'
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SKIPPED [2] mne/preprocessing/nirs/tests/test_nirs.py:507: could not import 'h5py': No module named 'h5py'
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SKIPPED [3] mne/preprocessing/tests/test_hfc.py:64: Requires testing dataset
SKIPPED [1] mne/preprocessing/tests/test_hfc.py:93: Requires testing dataset
SKIPPED [20] mne/preprocessing/tests/test_ica.py:91: could not import 'picard': No module named 'picard'
SKIPPED [8] mne/preprocessing/tests/test_ica.py:461: Qt API None has version None but pyqtgraph needs >= 5.12!
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SKIPPED [12] mne/tests/test_epochs.py:1636: could not import 'pandas': No module named 'pandas'
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SKIPPED [6] mne/tests/test_epochs.py:4930: could not import 'pandas': No module named 'pandas'
SKIPPED [1] mne/tests/test_epochs.py:5182: could not import 'pandas': No module named 'pandas'
SKIPPED [1] mne/tests/test_epochs.py:5262: could not import 'pandas': No module named 'pandas'
SKIPPED [1] mne/tests/test_event.py:527: Requires testing dataset
SKIPPED [1] mne/tests/test_event.py:572: Requires testing dataset
SKIPPED [1] mne/tests/test_evoked.py:448: could not import 'pandas': No module named 'pandas'
SKIPPED [3] mne/tests/test_evoked.py:480: could not import 'pandas': No module named 'pandas'
SKIPPED [1] mne/tests/test_filter.py:53: Requires MNE-C
SKIPPED [1] mne/tests/test_filter.py:838: CUDA not enabled
SKIPPED [1] mne/tests/test_freesurfer.py:36: Requires testing dataset
SKIPPED [1] mne/tests/test_freesurfer.py:44: Requires testing dataset
SKIPPED [1] mne/tests/test_freesurfer.py:55: Requires testing dataset
SKIPPED [1] mne/tests/test_freesurfer.py:75: Requires testing dataset
SKIPPED [1] mne/tests/test_freesurfer.py:110: Requires testing dataset
SKIPPED [2] mne/tests/test_freesurfer.py:219: Requires testing dataset
SKIPPED [1] mne/tests/test_freesurfer.py:278: Requires testing dataset
SKIPPED [2] mne/tests/test_label.py:277: Requires testing dataset
SKIPPED [1] mne/tests/test_label.py:320: Requires testing dataset
SKIPPED [1] mne/tests/test_label.py:331: Requires testing dataset
SKIPPED [1] mne/tests/test_label.py:365: Requires testing dataset
SKIPPED [1] mne/tests/test_label.py:415: Requires testing dataset
SKIPPED [1] mne/tests/test_label.py:448: Requires testing dataset
SKIPPED [1] mne/tests/test_label.py:468: Requires testing dataset
SKIPPED [1] mne/tests/test_label.py:546: Requires testing dataset
SKIPPED [1] mne/tests/test_label.py:559: Requires testing dataset
SKIPPED [1] mne/tests/test_label.py:738: Requires testing dataset
SKIPPED [1] mne/tests/test_label.py:836: Requires testing dataset
SKIPPED [1] mne/tests/test_label.py:919: Requires testing dataset
SKIPPED [1] mne/tests/test_label.py:955: Requires testing dataset
SKIPPED [1] mne/tests/test_label.py:1023: Requires testing dataset
SKIPPED [1] mne/tests/test_label.py:1063: Requires testing dataset
SKIPPED [1] mne/tests/test_label.py:1092: Requires testing dataset
SKIPPED [1] mne/tests/test_label.py:1162: Requires testing dataset
SKIPPED [2] mne/tests/test_label.py:1219: Requires testing dataset
SKIPPED [1] mne/tests/test_morph.py:80: Requires testing dataset
SKIPPED [1] mne/tests/test_morph.py:139: Requires testing dataset
SKIPPED [3] mne/tests/test_morph.py:232: Requires testing dataset
SKIPPED [1] mne/tests/test_morph.py:265: Requires testing dataset
SKIPPED [1] mne/tests/test_morph.py:297: Requires testing dataset
SKIPPED [1] mne/tests/test_morph.py:354: Requires testing dataset
SKIPPED [5] mne/tests/test_morph.py:551: Requires testing dataset
SKIPPED [1] mne/tests/test_morph.py:716: Requires testing dataset
SKIPPED [1] mne/tests/test_morph.py:819: Requires testing dataset
SKIPPED [3] mne/tests/test_morph.py:892: Requires testing dataset
SKIPPED [2] mne/tests/test_morph.py:1016: Requires testing dataset
SKIPPED [576] mne/tests/test_morph.py:1103: could not import 'dipy': No module named 'dipy'
SKIPPED [1] mne/tests/test_morph_map.py:21: Requires testing dataset
SKIPPED [6] mne/tests/test_parallel.py:29: MNE_FORCE_SERIAL cannot be set
SKIPPED [1] mne/tests/test_proj.py:126: Requires testing dataset
SKIPPED [1] mne/tests/test_proj.py:559: Requires testing dataset
SKIPPED [18] mne/tests/test_rank.py:221: Requires testing dataset
SKIPPED [1] mne/tests/test_source_estimate.py:118: Requires testing dataset
SKIPPED [1] mne/tests/test_source_estimate.py:146: Requires testing dataset
SKIPPED [1] mne/tests/test_source_estimate.py:182: Requires testing dataset
SKIPPED [1] mne/tests/test_source_estimate.py:252: Requires testing dataset
SKIPPED [1] mne/tests/test_source_estimate.py:280: Requires testing dataset
SKIPPED [1] mne/tests/test_source_estimate.py:304: Requires testing dataset
SKIPPED [1] mne/tests/test_source_estimate.py:345: Requires testing dataset
SKIPPED [1] mne/tests/test_source_estimate.py:392: Requires testing dataset
SKIPPED [4] mne/tests/test_source_estimate.py:502: could not import 'h5io': No module named 'h5io'
SKIPPED [4] mne/tests/test_source_estimate.py:588: Requires testing dataset
SKIPPED [1] mne/tests/test_source_estimate.py:659: Requires testing dataset
SKIPPED [1] mne/tests/test_source_estimate.py:668: Requires testing dataset
SKIPPED [4] mne/tests/test_source_estimate.py:682: Requires testing dataset
SKIPPED [6] mne/tests/test_source_estimate.py:844: Requires testing dataset
SKIPPED [1] mne/tests/test_source_estimate.py:1043: Requires testing dataset
SKIPPED [1] mne/tests/test_source_estimate.py:1173: Requires testing dataset
SKIPPED [1] mne/tests/test_source_estimate.py:1211: could not import 'pandas': No module named 'pandas'
SKIPPED [3] mne/tests/test_source_estimate.py:1235: could not import 'pandas': No module named 'pandas'
SKIPPED [1] mne/tests/test_source_estimate.py:1305: Requires testing dataset
SKIPPED [16] mne/tests/test_source_estimate.py:1344: could not import 'h5io': No module named 'h5io'
SKIPPED [1] mne/tests/test_source_estimate.py:1472: Requires testing dataset
SKIPPED [3] mne/tests/test_source_estimate.py:1527: Requires testing dataset
SKIPPED [3] mne/tests/test_source_estimate.py:1536: Requires testing dataset
SKIPPED [3] mne/tests/test_source_estimate.py:1545: Requires testing dataset
SKIPPED [1] mne/tests/test_source_estimate.py:1568: Requires testing dataset
SKIPPED [1] mne/tests/test_source_estimate.py:1599: Requires testing dataset
SKIPPED [1] mne/tests/test_source_estimate.py:1618: Requires testing dataset
SKIPPED [1] mne/tests/test_source_estimate.py:1645: Requires testing dataset
SKIPPED [1] mne/tests/test_source_estimate.py:1666: Requires testing dataset
SKIPPED [1] mne/tests/test_source_estimate.py:1780: Requires testing dataset
SKIPPED [6] mne/tests/test_source_estimate.py:1821: Requires testing dataset
SKIPPED [2] mne/tests/test_source_estimate.py:2005: Requires testing dataset
SKIPPED [1] mne/tests/test_surface.py:79: Requires testing dataset
SKIPPED [1] mne/tests/test_surface.py:126: Requires testing dataset
SKIPPED [1] mne/tests/test_surface.py:158: Requires testing dataset
SKIPPED [3] mne/tests/test_surface.py:173: could not import 'pyvista': No module named 'pyvista'
SKIPPED [1] mne/tests/test_surface.py:196: Requires Freesurfer command: mris_sphere
SKIPPED [3] mne/tests/test_surface.py:214: Requires testing dataset
SKIPPED [24] mne/tests/test_surface.py:254: could not import 'pyvista': No module named 'pyvista'
SKIPPED [1] mne/tests/test_surface.py:284: Requires testing dataset
SKIPPED [4] mne/tests/test_surface.py:336: Requires testing dataset
SKIPPED [1] mne/tests/test_transforms.py:93: Requires testing dataset
SKIPPED [1] mne/tests/test_transforms.py:102: Requires testing dataset
SKIPPED [1] mne/tests/test_transforms.py:301: Requires testing dataset
SKIPPED [2] mne/tests/test_transforms.py:422: Requires testing dataset
SKIPPED [1] mne/tests/test_transforms.py:573: Requires testing dataset
SKIPPED [1] mne/time_frequency/tests/test_ar.py:20: could not import 'patsy': No module named 'patsy'
SKIPPED [1] mne/time_frequency/tests/test_csd.py:250: could not import 'h5io': No module named 'h5io'
SKIPPED [1] mne/time_frequency/tests/test_multitaper.py:16: could not import 'nitime': No module named 'nitime'
SKIPPED [6] mne/time_frequency/tests/test_multitaper.py:41: could not import 'nitime': No module named 'nitime'
SKIPPED [6] mne/time_frequency/tests/test_spectrum.py:306: could not import 'pandas': No module named 'pandas'
SKIPPED [3] mne/time_frequency/tests/test_tfr.py:611: could not import 'h5io': No module named 'h5io'
SKIPPED [1] mne/time_frequency/tests/test_tfr.py:674: could not import 'h5io': No module named 'h5io'
SKIPPED [2] mne/time_frequency/tests/test_tfr.py:1224: could not import 'pandas': No module named 'pandas'
SKIPPED [1] mne/time_frequency/tests/test_tfr.py:1252: could not import 'pandas': No module named 'pandas'
SKIPPED [5] mne/time_frequency/tests/test_tfr.py:1342: could not import 'pandas': No module named 'pandas'
SKIPPED [3] mne/time_frequency/tests/test_tfr.py:1379: could not import 'pandas': No module named 'pandas'
SKIPPED [12] mne/time_frequency/tests/test_tfr.py:1422: could not import 'h5io': No module named 'h5io'
SKIPPED [1] mne/utils/tests/test_check.py:49: Requires testing dataset
SKIPPED [6] mne/utils/tests/test_check.py:79: Requires testing dataset
SKIPPED [1] mne/utils/tests/test_check.py:129: Requires testing dataset
SKIPPED [1] mne/utils/tests/test_check.py:240: Requires testing dataset
SKIPPED [1] mne/utils/tests/test_check.py:283: Requires testing dataset
SKIPPED [1] mne/utils/tests/test_check.py:366: Requires testing dataset
SKIPPED [1] mne/utils/tests/test_config.py:138: could not import 'mne_qt_browser': No module named 'mne_qt_browser'
SKIPPED [1] mne/utils/tests/test_config.py:173: MNE_SKIP_NETWORK_TESTS is set
SKIPPED [1] mne/utils/tests/test_mixin.py:15: Requires testing dataset
SKIPPED [16] mne/utils/tests/test_numerics.py:554: Numba not installed
SKIPPED [1] mne/viz/_brain/tests/test_brain.py:122: Test skipped, requires pyvista.
SKIPPED [1] mne/viz/_brain/tests/test_brain.py:167: Requires testing dataset
SKIPPED [1] mne/viz/_brain/tests/test_brain.py:174: Requires testing dataset
SKIPPED [1] mne/viz/_brain/tests/test_brain.py:181: Requires testing dataset
SKIPPED [1] mne/viz/_brain/tests/test_brain.py:190: Requires testing dataset
SKIPPED [7] mne/viz/_brain/tests/test_brain.py:549: Requires testing dataset
SKIPPED [2] mne/viz/_brain/tests/test_brain.py:680: Test skipped, requires pyvista.
SKIPPED [1] mne/viz/_brain/tests/test_brain.py:712: Test skipped, requires pyvista.
SKIPPED [2] mne/viz/_brain/tests/test_brain.py:746: Requires testing dataset
SKIPPED [2] mne/viz/_brain/tests/test_brain.py:770: Requires testing dataset
SKIPPED [1] mne/viz/_brain/tests/test_brain.py:849: Test skipped, requires pyvista.
SKIPPED [1] mne/viz/_brain/tests/test_brain.py:883: Requires testing dataset
SKIPPED [16] mne/viz/_brain/tests/test_brain.py:971: Requires testing dataset
SKIPPED [1] mne/viz/_brain/tests/test_brain.py:1209: Requires testing dataset
SKIPPED [1] mne/viz/_brain/tests/test_brain.py:1253: Requires testing dataset
SKIPPED [1] mne/viz/_brain/tests/test_brain.py:1390: Test skipped, requires pyvista.
SKIPPED [1] mne/viz/_brain/tests/test_brain.py:1497: Test skipped, requires pyvista.
SKIPPED [1] mne/viz/_brain/tests/test_notebook.py:13: Requires testing dataset
SKIPPED [1] mne/viz/_brain/tests/test_notebook.py:41: Requires testing dataset
SKIPPED [1] mne/viz/_brain/tests/test_notebook.py:133: Requires testing dataset
SKIPPED [1] mne/viz/backends/tests/test_abstract.py:109: requires pyvistaqt
SKIPPED [1] mne/viz/backends/tests/test_abstract.py:117: Skipping Notebook test: No module named 'nbformat'
SKIPPED [1] mne/viz/backends/tests/test_renderer.py:19: requires pyvistaqt
SKIPPED [1] mne/viz/backends/tests/test_renderer.py:41: Test skipped, requires pyvista.
SKIPPED [1] mne/viz/backends/tests/test_renderer.py:61: Test skipped, requires pyvista.
SKIPPED [1] mne/viz/backends/tests/test_renderer.py:177: Test skipped, requires pyvista.
SKIPPED [1] mne/viz/backends/tests/test_renderer.py:185: Test skipped, requires pyvista.
SKIPPED [1] mne/viz/backends/tests/test_renderer.py:217: Test skipped, requires pyvista.
SKIPPED [3] mne/viz/backends/tests/test_utils.py:53: Qt API None has version None but pyqtgraph needs >= 5.12!
SKIPPED [1] mne/viz/tests/test_3d.py:122: Requires testing dataset
SKIPPED [1] mne/viz/tests/test_3d.py:177: Requires testing dataset
SKIPPED [1] mne/viz/tests/test_3d.py:219: Requires testing dataset
SKIPPED [12] mne/viz/tests/test_3d.py:268: Requires testing dataset
SKIPPED [4] mne/viz/tests/test_3d.py:423: Requires testing dataset
SKIPPED [1] mne/viz/tests/test_3d.py:476: Requires testing dataset
SKIPPED [1] mne/viz/tests/test_3d.py:877: Requires testing dataset
SKIPPED [1] mne/viz/tests/test_3d.py:903: Requires testing dataset
SKIPPED [1] mne/viz/tests/test_3d.py:1033: Requires testing dataset
SKIPPED [2] mne/viz/tests/test_3d.py:1090: Requires testing dataset
SKIPPED [3] mne/viz/tests/test_3d.py:1122: Requires testing dataset
SKIPPED [1] mne/viz/tests/test_3d.py:1157: Requires testing dataset
SKIPPED [1] mne/viz/tests/test_3d.py:1174: Requires testing dataset
SKIPPED [1] mne/viz/tests/test_3d.py:1332: Requires testing dataset
SKIPPED [1] mne/viz/tests/test_3d.py:1360: Requires testing dataset
SKIPPED [4] mne/viz/tests/test_3d_mpl.py:35: Requires testing dataset
SKIPPED [1] mne/viz/tests/test_3d_mpl.py:111: Requires testing dataset
SKIPPED [1] mne/viz/tests/test_3d_mpl.py:156: Requires testing dataset
SKIPPED [1] mne/viz/tests/test_epochs.py:18: Qt API None has version None but pyqtgraph needs >= 5.12!
SKIPPED [1] mne/viz/tests/test_epochs.py:27: Qt API None has version None but pyqtgraph needs >= 5.12!
SKIPPED [3] mne/viz/tests/test_epochs.py:75: Qt API None has version None but pyqtgraph needs >= 5.12!
SKIPPED [1] mne/viz/tests/test_epochs.py:83: Qt API None has version None but pyqtgraph needs >= 5.12!
SKIPPED [1] mne/viz/tests/test_epochs.py:97: Qt API None has version None but pyqtgraph needs >= 5.12!
SKIPPED [1] mne/viz/tests/test_epochs.py:111: Qt API None has version None but pyqtgraph needs >= 5.12!
SKIPPED [1] mne/viz/tests/test_epochs.py:160: Qt API None has version None but pyqtgraph needs >= 5.12!
SKIPPED [4] mne/viz/tests/test_epochs.py:215: Qt API None has version None but pyqtgraph needs >= 5.12!
SKIPPED [1] mne/viz/tests/test_epochs.py:260: Qt API None has version None but pyqtgraph needs >= 5.12!
SKIPPED [1] mne/viz/tests/test_epochs.py:423: Requires testing dataset
SKIPPED [2] mne/viz/tests/test_epochs.py:430: Requires testing dataset
SKIPPED [1] mne/viz/tests/test_epochs.py:485: Requires testing dataset
SKIPPED [1] mne/viz/tests/test_epochs.py:504: Qt API None has version None but pyqtgraph needs >= 5.12!
SKIPPED [1] mne/viz/tests/test_evoked.py:608: Requires testing dataset
SKIPPED [1] mne/viz/tests/test_ica.py:264: Qt API None has version None but pyqtgraph needs >= 5.12!
SKIPPED [1] mne/viz/tests/test_ica.py:480: Qt API None has version None but pyqtgraph needs >= 5.12!
SKIPPED [1] mne/viz/tests/test_misc.py:139: Requires testing dataset
SKIPPED [1] mne/viz/tests/test_misc.py:276: Requires testing dataset
SKIPPED [1] mne/viz/tests/test_misc.py:299: Requires testing dataset
SKIPPED [1] mne/viz/tests/test_misc.py:308: Requires testing dataset
SKIPPED [1] mne/viz/tests/test_misc.py:329: Requires testing dataset
SKIPPED [1] mne/viz/tests/test_proj.py:17: Requires testing dataset
SKIPPED [1] mne/viz/tests/test_raw.py:271: Qt API None has version None but pyqtgraph needs >= 5.12!
SKIPPED [1] mne/viz/tests/test_raw.py:298: Qt API None has version None but pyqtgraph needs >= 5.12!
SKIPPED [1] mne/viz/tests/test_raw.py:400: Qt API None has version None but pyqtgraph needs >= 5.12!
SKIPPED [1] mne/viz/tests/test_raw.py:438: Qt API None has version None but pyqtgraph needs >= 5.12!
SKIPPED [1] mne/viz/tests/test_raw.py:473: Qt API None has version None but pyqtgraph needs >= 5.12!
SKIPPED [1] mne/viz/tests/test_raw.py:501: Qt API None has version None but pyqtgraph needs >= 5.12!
SKIPPED [1] mne/viz/tests/test_raw.py:543: Qt API None has version None but pyqtgraph needs >= 5.12!
SKIPPED [1] mne/viz/tests/test_raw.py:638: Qt API None has version None but pyqtgraph needs >= 5.12!
SKIPPED [2] mne/viz/tests/test_raw.py:656: Qt API None has version None but pyqtgraph needs >= 5.12!
SKIPPED [1] mne/viz/tests/test_raw.py:691: Qt API None has version None but pyqtgraph needs >= 5.12!
SKIPPED [1] mne/viz/tests/test_raw.py:704: Qt API None has version None but pyqtgraph needs >= 5.12!
SKIPPED [2] mne/viz/tests/test_raw.py:713: Requires testing dataset
SKIPPED [2] mne/viz/tests/test_raw.py:723: Requires testing dataset
SKIPPED [1] mne/viz/tests/test_raw.py:731: Qt API None has version None but pyqtgraph needs >= 5.12!
SKIPPED [1] mne/viz/tests/test_raw.py:741: Qt API None has version None but pyqtgraph needs >= 5.12!
SKIPPED [3] mne/viz/tests/test_raw.py:784: Qt API None has version None but pyqtgraph needs >= 5.12!
SKIPPED [4] mne/viz/tests/test_raw.py:841: Qt API None has version None but pyqtgraph needs >= 5.12!
SKIPPED [1] mne/viz/tests/test_raw.py:873: The MPL backend does not support draggable annotations.
SKIPPED [1] mne/viz/tests/test_raw.py:865: Qt API None has version None but pyqtgraph needs >= 5.12!
SKIPPED [2] mne/viz/tests/test_raw.py:948: Qt API None has version None but pyqtgraph needs >= 5.12!
SKIPPED [2] mne/viz/tests/test_raw.py:1158: Qt API None has version None but pyqtgraph needs >= 5.12!
SKIPPED [1] mne/viz/tests/test_raw.py:1172: Qt API None has version None but pyqtgraph needs >= 5.12!
SKIPPED [3] mne/viz/tests/test_raw.py:1178: Qt API None has version None but pyqtgraph needs >= 5.12!
SKIPPED [1] mne/viz/tests/test_raw.py:1199: Qt API None has version None but pyqtgraph needs >= 5.12!
SKIPPED [1] mne/viz/tests/test_raw.py:1211: Qt API None has version None but pyqtgraph needs >= 5.12!
SKIPPED [1] mne/viz/tests/test_raw.py:1223: Qt API None has version None but pyqtgraph needs >= 5.12!
SKIPPED [1] mne/viz/tests/test_scraper.py:12: Qt API None has version None but pyqtgraph needs >= 5.12!
SKIPPED [1] mne/viz/tests/test_topomap.py:135: Requires testing dataset
SKIPPED [1] mne/viz/tests/test_topomap.py:683: Requires testing dataset
SKIPPED [1] mne/viz/tests/test_topomap.py:756: Requires testing dataset
SKIPPED [1] mne/viz/tests/test_topomap.py:762: Requires testing dataset
SKIPPED [1] mne/viz/tests/test_ui_events.py:35: Requires testing dataset
===== 2 failed, 2490 passed, 2227 skipped, 6 xfailed in 511.91s (0:08:31) ======
make[1]: *** [debian/rules:23: override_dh_auto_test] Error 1
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:14: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------

The above is just how the build ends and not necessarily the most relevant part.
If required, the full build log is available here:

https://people.debian.org/~sanvila/build-logs/202503/

About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.

If you could not reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.

If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:python-mne, so that this is still
visible in the BTS web page for this package.

Thanks.