[Debian-med-packaging] Bug#1105460: muscle: FTBFS with make --shuffle=reverse: Fatal error: can't create Linux/usage.o: No such file or directory

[Lucas Nussbaum]

Source: muscle
Version: 1:5.1.0-1
Severity: minor
Tags: trixie sid ftbfs
User: lucas at debian.org
Usertags: ftbfs-shuffle

Hi,

GNU Make now has a --shuffle option that simulates non-deterministic ordering
of target prerequisites. See
https://trofi.github.io/posts/238-new-make-shuffle-mode.html and also previous
work in Debian by Santiago Vila:
https://people.debian.org/~sanvila/make-shuffle/

This package fails to build with make --shuffle=reverse.
This is likely to be caused by a missing dependency in
debian/rules or an upstream Makefile.

More information about this mass bug filing is available at
https://wiki.debian.org/qa.debian.org/FTBFS/Shuffle

Relevant part (hopefully):
> make[2]: Entering directory '/build/reproducible-path/muscle-5.1.0/src'
> Makefile:50: update target 'Linux/usorter.o' due to: target does not exist
> g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/build/reproducible-path/muscle-5.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -fopenmp -ffast-math -c -o Linux/usorter.o usorter.cpp
> Makefile:50: update target 'Linux/usage.o' due to: target does not exist
> g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/build/reproducible-path/muscle-5.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -fopenmp -ffast-math -c -o Linux/usage.o usage.cpp
> Makefile:50: update target 'Linux/upgma5.o' due to: target does not exist
> g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/build/reproducible-path/muscle-5.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -fopenmp -ffast-math -c -o Linux/upgma5.o upgma5.cpp
> Makefile:50: update target 'Linux/uclust.o' due to: target does not exist
> g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/build/reproducible-path/muscle-5.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -fopenmp -ffast-math -c -o Linux/uclust.o uclust.cpp
> Makefile:50: update target 'Linux/trimtorefefa.o' due to: target does not exist
> g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/build/reproducible-path/muscle-5.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -fopenmp -ffast-math -c -o Linux/trimtorefefa.o trimtorefefa.cpp
> Makefile:50: update target 'Linux/trimtoref.o' due to: target does not exist
> g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/build/reproducible-path/muscle-5.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -fopenmp -ffast-math -c -o Linux/trimtoref.o trimtoref.cpp
> Makefile:50: update target 'Linux/treetofile.o' due to: target does not exist
> g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/build/reproducible-path/muscle-5.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -fopenmp -ffast-math -c -o Linux/treetofile.o treetofile.cpp
> Makefile:50: update target 'Linux/treesubsetnodes.o' due to: target does not exist
> g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/build/reproducible-path/muscle-5.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -fopenmp -ffast-math -c -o Linux/treesubsetnodes.o treesubsetnodes.cpp
> Assembler messages:
> Fatal error: can't create Linux/usage.o: No such file or directory
> make[2]: *** [Makefile:50: Linux/usage.o] Error 1 shuffle=reverse


The full build log is available from:
http://qa-logs.debian.net/2025/05/05/shuffle/reverse/muscle_5.1.0-1_unstable_reverse.log

If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects