[Debian-med-packaging] Bug#1105561: yaha: FTBFS with make --shuffle=reverse: src/Math.c:343:1: fatal error: opening dependency file obj/Math.d: No such file or directory

[Lucas Nussbaum]

Source: yaha
Version: 0.1.83-3
Severity: minor
Tags: trixie sid ftbfs
User: lucas at debian.org
Usertags: ftbfs-shuffle

Hi,

GNU Make now has a --shuffle option that simulates non-deterministic ordering
of target prerequisites. See
https://trofi.github.io/posts/238-new-make-shuffle-mode.html and also previous
work in Debian by Santiago Vila:
https://people.debian.org/~sanvila/make-shuffle/

This package fails to build with make --shuffle=reverse.
This is likely to be caused by a missing dependency in
debian/rules or an upstream Makefile.

More information about this mass bug filing is available at
https://wiki.debian.org/qa.debian.org/FTBFS/Shuffle

Relevant part (hopefully):
> cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/yaha-0.1.83=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -D BUILDNUM=83 -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -c src/FileHelpers.c -o obj/FileHelpers.o
> src/SW.cpp:799:5: warning: redeclaration of ‘template<unsigned char banded, unsigned char extension, unsigned char reverse, unsigned char XCutoff> int findAffineGapScore(QueryState_t*, char*, SUINT, char*, SUINT, EditOpList_t*, SUINT*, SUINT*)’ may not have default arguments [-fpermissive]
>   799 | int findAffineGapScore(QueryState_t * QS, char * qStr, SUINT qLen, char * rStr, SUINT rLen, EditOpList_t * list, SUINT * addedQLen = NULL, SUINT * addedRLen = NULL)
>       |     ^~~~~~~~~~~~~~~~~~
> src/Math.c:343:1: fatal error: opening dependency file obj/Math.d: No such file or directory
>   343 | }
>       | ^
> compilation terminated.
> make[1]: *** [Makefile:62: obj/Math.o] Error 1 shuffle=reverse


The full build log is available from:
http://qa-logs.debian.net/2025/05/05/shuffle/reverse/yaha_0.1.83-3_unstable_reverse.log

If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects