[Debian-med-packaging] Bug#1105603: saint: FTBFS with make --shuffle=reverse: mv: target '/build/reproducible-path/saint-2.5.0+dfsg/build': No such file or directory
Lucas Nussbaum
lucas at debian.org
Tue May 13 20:14:33 BST 2025
Source: saint
Version: 2.5.0+dfsg-4
Severity: minor
Tags: trixie sid ftbfs
User: lucas at debian.org
Usertags: ftbfs-shuffle
Hi,
GNU Make now has a --shuffle option that simulates non-deterministic ordering
of target prerequisites. See
https://trofi.github.io/posts/238-new-make-shuffle-mode.html and also previous
work in Debian by Santiago Vila:
https://people.debian.org/~sanvila/make-shuffle/
This package fails to build with make --shuffle=reverse.
This is likely to be caused by a missing dependency in
debian/rules or an upstream Makefile.
More information about this mass bug filing is available at
https://wiki.debian.org/qa.debian.org/FTBFS/Shuffle
Relevant part (hopefully):
> make[2]: Entering directory '/build/reproducible-path/saint-2.5.0+dfsg'
> Makefile:31: update target 'clean' due to: target does not exist
> rm -rf /build/reproducible-path/saint-2.5.0+dfsg/build
> rm -f /build/reproducible-path/saint-2.5.0+dfsg/src/*/*.gch
> Makefile:79: update target 'saint-int-ctrl' due to: target does not exist
> gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/saint-2.5.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -c /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/*.c /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/*.h
> /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/initdata.c: In function ‘read_interaction_data’:
> /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/initdata.c:28:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
> 28 | fscanf(fpinter, "%s", buf);
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~
> /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/initdata.c:30:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
> 30 | fscanf(fpinter, "%s", buf);
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~
> /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/initdata.c:32:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
> 32 | fscanf(fpinter, "%s", buf);
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~
> /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/initdata.c:34:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
> 34 | fscanf(fpinter, "%s", buf);
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~
> /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/initdata.c: In function ‘mapPreyToData’:
> /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/initdata.c:275:5: warning: ignoring return value of ‘chdir’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
> 275 | chdir("LOG");
> | ^~~~~~~~~~~~
> /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/initdata.c:281:5: warning: ignoring return value of ‘chdir’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
> 281 | chdir("..");
> | ^~~~~~~~~~~
> /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/initdata.c:294:5: warning: ignoring return value of ‘chdir’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
> 294 | chdir("LOG");
> | ^~~~~~~~~~~~
> /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/initdata.c:300:5: warning: ignoring return value of ‘chdir’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
> 300 | chdir("..");
> | ^~~~~~~~~~~
> /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/initdata.c: In function ‘read_prey_data’:
> /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/initdata.c:328:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
> 328 | fscanf(fpprey, "%s", buf);
> | ^~~~~~~~~~~~~~~~~~~~~~~~~
> /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/initdata.c:331:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
> 331 | fscanf(fpprey, "%s", buf);
> | ^~~~~~~~~~~~~~~~~~~~~~~~~
> /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/initdata.c: In function ‘mapIPBaitToData’:
> /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/initdata.c:472:5: warning: ignoring return value of ‘chdir’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
> 472 | chdir("LOG");
> | ^~~~~~~~~~~~
> /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/initdata.c:478:5: warning: ignoring return value of ‘chdir’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
> 478 | chdir("..");
> | ^~~~~~~~~~~
> /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/initdata.c:491:5: warning: ignoring return value of ‘chdir’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
> 491 | chdir("LOG");
> | ^~~~~~~~~~~~
> /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/initdata.c:497:5: warning: ignoring return value of ‘chdir’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
> 497 | chdir("..");
> | ^~~~~~~~~~~
> /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/initdata.c: In function ‘read_bait_data’:
> /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/initdata.c:562:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
> 562 | fscanf(fpbait, "%s", buf);
> | ^~~~~~~~~~~~~~~~~~~~~~~~~
> /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/initdata.c:564:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
> 564 | fscanf(fpbait, "%s", buf);
> | ^~~~~~~~~~~~~~~~~~~~~~~~~
> /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/initdata.c:566:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
> 566 | fscanf(fpbait, "%s", buf);
> | ^~~~~~~~~~~~~~~~~~~~~~~~~
> In file included from /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/saint.h:29,
> from /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/initdata.c:1:
> /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/initdata.c: In function ‘find_unique_interaction’:
> /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/initdata.c:123:34: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
> 123 | assert(data->ubait = (char **) calloc(data->nuinter, sizeof(char *)));
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> In file included from /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/saint.h:22:
> /usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here
> 675 | extern void *calloc (size_t __nmemb, size_t __size)
> | ^~~~~~
> /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/initdata.c:125:33: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
> 125 | assert(data->prob = (float *) calloc(data->nuinter, sizeof(float)));
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> /usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here
> 675 | extern void *calloc (size_t __nmemb, size_t __size)
> | ^~~~~~
> /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/initdata.c: In function ‘mapPreyToData’:
> /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/initdata.c:243:31: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
> 243 | assert(data->p2i = (int **) calloc(data->nprey, sizeof(int *)));
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> /usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here
> 675 | extern void *calloc (size_t __nmemb, size_t __size)
> | ^~~~~~
> /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/printmap.c: In function ‘printMap’:
> /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/printmap.c:99:3: warning: ignoring return value of ‘chdir’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
> 99 | chdir("MAPPING");
> | ^~~~~~~~~~~~~~~~
> /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/printmap.c:105:3: warning: ignoring return value of ‘chdir’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
> 105 | chdir("..");
> | ^~~~~~~~~~~
> /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/result.c: In function ‘write_result’:
> /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/result.c:183:3: warning: ignoring return value of ‘chdir’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
> 183 | chdir("RESULT");
> | ^~~~~~~~~~~~~~~
> /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/result.c:192:3: warning: ignoring return value of ‘chdir’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
> 192 | chdir("..");
> | ^~~~~~~~~~~
> /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/saint.c: In function ‘ncol’:
> /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/saint.c:25:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
> 25 | fgets(buf, sizeof(buf), fp);
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~
> /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/saint.c: In function ‘main’:
> /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/saint.c:142:3: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
> 142 | system("mkdir LOG"); /* error logs */
> | ^~~~~~~~~~~~~~~~~~~
> /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/saint.c:143:3: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
> 143 | system("mkdir MAPPING"); /* mapping logs */
> | ^~~~~~~~~~~~~~~~~~~~~~~
> /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/saint.c:144:3: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
> 144 | system("mkdir MCMC"); /* posterior samples */
> | ^~~~~~~~~~~~~~~~~~~~
> /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/saint.c:145:3: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
> 145 | system("mkdir RESULT"); /* posterior probabilities, other summaries */
> | ^~~~~~~~~~~~~~~~~~~~~~
> /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/saint.c:160:3: warning: ignoring return value of ‘chdir’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
> 160 | chdir("MCMC");
> | ^~~~~~~~~~~~~
> /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/saint.c:209:3: warning: ignoring return value of ‘chdir’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
> 209 | chdir("..");
> | ^~~~~~~~~~~
> mv *.o /build/reproducible-path/saint-2.5.0+dfsg/build
> mv: target '/build/reproducible-path/saint-2.5.0+dfsg/build': No such file or directory
> make[2]: *** [Makefile:80: saint-int-ctrl] Error 1 shuffle=reverse
The full build log is available from:
http://qa-logs.debian.net/2025/05/05/shuffle/reverse/saint_2.5.0+dfsg-4_unstable_reverse.log
If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
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