[Debian-med-packaging] Bug#1119779: sambamba: diff for NMU version 1.0.1+dfsg-2.1

[Sudip Mukherjee]

Control: tags 1119779 + patch
Control: tags 1119779 + pending
--

Dear maintainer,

I've prepared an NMU for sambamba (versioned as 1.0.1+dfsg-2.1) and
uploaded it to DELAYED/2. Please feel free to tell me if I
should cancel it.

--
Regards
Sudip

diffstat for sambamba-1.0.1+dfsg sambamba-1.0.1+dfsg

 changelog                   |    7 +++++++
 patches/missing-break.patch |   17 +++++++++++++++++
 patches/series              |    1 +
 3 files changed, 25 insertions(+)

diff -Nru sambamba-1.0.1+dfsg/debian/changelog sambamba-1.0.1+dfsg/debian/changelog
--- sambamba-1.0.1+dfsg/debian/changelog	2024-04-16 19:18:00.000000000 +0100
+++ sambamba-1.0.1+dfsg/debian/changelog	2025-11-16 14:07:41.000000000 +0000
@@ -1,3 +1,10 @@
+sambamba (1.0.1+dfsg-2.1) unstable; urgency=medium
+
+  * Non-maintainer upload.
+  * Apply upstream fix for missing break to fix FTBFS. (Closes: #1119779)
+
+ -- Sudip Mukherjee <sudipm.mukherjee at gmail.com>  Sun, 16 Nov 2025 14:07:41 +0000
+
 sambamba (1.0.1+dfsg-2) unstable; urgency=medium
 
   * Build-Depends: architecture-is-64-bit, architecture-is-little-endian
diff -Nru sambamba-1.0.1+dfsg/debian/patches/missing-break.patch sambamba-1.0.1+dfsg/debian/patches/missing-break.patch
--- sambamba-1.0.1+dfsg/debian/patches/missing-break.patch	1970-01-01 01:00:00.000000000 +0100
+++ sambamba-1.0.1+dfsg/debian/patches/missing-break.patch	2025-11-16 14:06:40.000000000 +0000
@@ -0,0 +1,17 @@
+Description: stream.d: add missing break
+
+Origin: upstream, https://github.com/biod/sambamba/commit/5fdcf6f3015cb17b805514397223f7513bc92613
+Bug-Debian: https://bugs.debian.org/1119779
+Last-Update: 2025-11-16
+---
+
+--- sambamba-1.0.1+dfsg.orig/BioD/bio/core/utils/stream.d
++++ sambamba-1.0.1+dfsg/BioD/bio/core/utils/stream.d
+@@ -29,6 +29,7 @@ FileMode toFileMode(string mode) {
+             break;
+         case "r+", "r+b", "rb+":
+             result = FileMode.In | FileMode.Out; // 1100
++            break;
+         case "w", "wb":
+             result = FileMode.OutNew; // 0110
+             break;
diff -Nru sambamba-1.0.1+dfsg/debian/patches/series sambamba-1.0.1+dfsg/debian/patches/series
--- sambamba-1.0.1+dfsg/debian/patches/series	2024-04-16 19:18:00.000000000 +0100
+++ sambamba-1.0.1+dfsg/debian/patches/series	2025-11-16 14:06:53.000000000 +0000
@@ -1 +1,2 @@
 2to3.patch
+missing-break.patch