[Debian-med-packaging] Bug#1119779: sambamba: FTBFS: ../BioD/bio/core/utils/stream.d(32): Error: switch case fallthrough - use 'goto case; ' if intended

Santiago Vila sanvila at debian.org
Fri Oct 31 11:29:50 GMT 2025 

Package: src:sambamba
Version: 1.0.1+dfsg-2
Severity: serious
Tags: ftbfs forky sid

Dear maintainer:

During a rebuild of all packages in unstable, this package failed to build.

Below you will find the last part of the build log (probably the most
relevant part, but not necessarily). If required, the full build log
is available here:

https://people.debian.org/~sanvila/build-logs/202510/

About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.

If you cannot reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.

If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:sambamba, so that this is still
visible in the BTS web page for this package.

Thanks.

--------------------------------------------------------------------------------
[...]
 debian/rules clean
mkdir -p obj-x86_64-linux-gnu
dh clean --buildsystem=meson
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
rm -rf /<<PKGBUILDDIR>>/output/
rm -f test.log
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_autoreconf_clean -O--buildsystem=meson
   dh_clean -O--buildsystem=meson
 debian/rules binary
mkdir -p obj-x86_64-linux-gnu
dh binary --buildsystem=meson
   dh_update_autotools_config -O--buildsystem=meson
   dh_autoreconf -O--buildsystem=meson
   debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure -- -Doptimize_strong=true -Dcpp_link_args="-wi -L=-z -L=relro /usr/lib/x86_64-linux-gnu/libhts.a -L=-lz -L=-lcrypto -L=-lcurl -L=-llzma -L=-lbz2 -L=-ldeflate -L=-llz4"
	cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb LC_ALL=C.UTF-8 meson setup .. --wrap-mode=nodownload --buildtype=plain --prefix=/usr --sysconfdir=/etc --localstatedir=/var --libdir=lib/x86_64-linux-gnu -Dpython.bytecompile=-1 -Doptimize_strong=true -Dcpp_link_args="-wi -L=-z -L=relro /usr/lib/x86_64-linux-gnu/libhts.a -L=-lz -L=-lcrypto -L=-lcurl -L=-llzma -L=-lbz2 -L=-ldeflate -L=-llz4"
The Meson build system
Version: 1.9.1
Source dir: /<<PKGBUILDDIR>>
Build dir: /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu
Build type: native build
Project name: Sambamba
Project version: 1.0.1
C compiler for the host machine: cc (gcc 15.2.0 "cc (Debian 15.2.0-7) 15.2.0")
C linker for the host machine: cc ld.bfd 2.45
D compiler for the host machine: ldc2 (llvm 1.41.0 "LDC - the LLVM D compiler (1.41.0):")
D linker for the host machine: ldc2 ld.bfd 2.45
Host machine cpu family: x86_64
Host machine cpu: x86_64
../meson.build:18: WARNING: Project does not target a minimum version but uses feature deprecated since '0.56.0': meson.source_root. use meson.project_source_root() or meson.global_source_root() instead.
../meson.build:19: WARNING: Project does not target a minimum version but uses feature deprecated since '0.56.0': meson.build_root. use meson.project_build_root() or meson.global_build_root() instead.
Found pkg-config: YES (/usr/bin/pkg-config) 1.8.1
Run-time dependency liblz4 found: YES 1.10.0
Run-time dependency zlib found: YES 1.3.1
Program ldc2 found: YES (/usr/bin/ldc2)
Program mkdir found: YES (/usr/bin/mkdir)
../meson.build:220: WARNING: Project does not target a minimum version but uses feature deprecated since '0.55.0': ExternalProgram.path. use ExternalProgram.full_path() instead
WARNING: You should add the boolean check kwarg to the run_command call.
         It currently defaults to false,
         but it will default to true in meson 2.0.
         See also: https://github.com/mesonbuild/meson/issues/9300
../meson.build:227: WARNING: Project does not target a minimum version but uses feature deprecated since '0.55.0': ExternalProgram.path. use ExternalProgram.full_path() instead
Program /<<PKGBUILDDIR>>/test/test_suite.sh found: YES (/<<PKGBUILDDIR>>/test/test_suite.sh)
Build targets in project: 1
WARNING: Deprecated features used:
 * 0.55.0: {'ExternalProgram.path'}
 * 0.56.0: {'meson.build_root', 'meson.source_root'}

Sambamba 1.0.1

  User defined options
    buildtype         : plain
    cpp_link_args     : -wi -L=-z -L=relro /usr/lib/x86_64-linux-gnu/libhts.a -L=-lz -L=-lcrypto -L=-lcurl -L=-llzma -L=-lbz2 -L=-ldeflate -L=-llz4
    libdir            : lib/x86_64-linux-gnu
    localstatedir     : /var
    optimize_strong   : true
    prefix            : /usr
    python.bytecompile: -1
    sysconfdir        : /etc
    wrap_mode         : nodownload

Found ninja-1.12.1 at /usr/bin/ninja
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_auto_build -O--buildsystem=meson
	cd obj-x86_64-linux-gnu && LC_ALL=C.UTF-8 ninja -j2 -v
[1/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_main.d.o.deps -of=sambamba.p/sambamba_main.d.o -c ../sambamba/main.d
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[38/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_kmer.d.o.deps -of=sambamba.p/BioD_bio_core_kmer.d.o -c ../BioD/bio/core/kmer.d
[39/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_region.d.o.deps -of=sambamba.p/BioD_bio_core_region.d.o -c ../BioD/bio/core/region.d
[40/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_view.d.o.deps -of=sambamba.p/sambamba_view.d.o -c ../sambamba/view.d
[41/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_tinymap.d.o.deps -of=sambamba.p/BioD_bio_core_tinymap.d.o -c ../BioD/bio/core/tinymap.d
[42/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_sequence.d.o.deps -of=sambamba.p/BioD_bio_core_sequence.d.o -c ../BioD/bio/core/sequence.d
[43/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_algo.d.o.deps -of=sambamba.p/BioD_bio_core_utils_algo.d.o -c ../BioD/bio/core/utils/algo.d
[44/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_exception.d.o.deps -of=sambamba.p/BioD_bio_core_utils_exception.d.o -c ../BioD/bio/core/utils/exception.d
[45/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_format.d.o.deps -of=sambamba.p/BioD_bio_core_utils_format.d.o -c ../BioD/bio/core/utils/format.d
[46/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_memoize.d.o.deps -of=sambamba.p/BioD_bio_core_utils_memoize.d.o -c ../BioD/bio/core/utils/memoize.d
[47/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_bylinefast.d.o.deps -of=sambamba.p/BioD_bio_core_utils_bylinefast.d.o -c ../BioD/bio/core/utils/bylinefast.d
[48/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_outbuffer.d.o.deps -of=sambamba.p/BioD_bio_core_utils_outbuffer.d.o -c ../BioD/bio/core/utils/outbuffer.d
[49/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_range.d.o.deps -of=sambamba.p/BioD_bio_core_utils_range.d.o -c ../BioD/bio/core/utils/range.d
[50/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_roundbuf.d.o.deps -of=sambamba.p/BioD_bio_core_utils_roundbuf.d.o -c ../BioD/bio/core/utils/roundbuf.d
[51/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_switchendianness.d.o.deps -of=sambamba.p/BioD_bio_core_utils_switchendianness.d.o -c ../BioD/bio/core/utils/switchendianness.d
[52/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_stream.d.o.deps -of=sambamba.p/BioD_bio_core_utils_stream.d.o -c ../BioD/bio/core/utils/stream.d
FAILED: sambamba.p/BioD_bio_core_utils_stream.d.o 
ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_stream.d.o.deps -of=sambamba.p/BioD_bio_core_utils_stream.d.o -c ../BioD/bio/core/utils/stream.d
../BioD/bio/core/utils/stream.d(32): Error: switch case fallthrough - use 'goto case;' if intended
        case "w", "wb":
        ^
[53/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_tmpfile.d.o.deps -of=sambamba.p/BioD_bio_core_utils_tmpfile.d.o -c ../BioD/bio/core/utils/tmpfile.d
ninja: build stopped: subcommand failed.
dh_auto_build: error: cd obj-x86_64-linux-gnu && LC_ALL=C.UTF-8 ninja -j2 -v returned exit code 1
make: *** [debian/rules:8: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------

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