[Debian-med-packaging] Bug#1113530: sortmerna: FTBFS with CMake 4

roehling at debian.org roehling at debian.org
Mon Sep 1 00:05:07 BST 2025 

Source: sortmerna
Version: 4.3.7-2
Severity: serious
User: cmake at packages.debian.org
Usertags: cmake-4
Tags: ftbfs, forky, sid

Dear maintainer,

During a test rebuild for CMake 4, sortmerna failed to rebuild.

Log Summary:
-------------------------------------------------------------------------------
[...]
Unpacking cmake (4.1.1-1) ...
Selecting previously unselected package libdebhelper-perl.
Preparing to unpack .../46-libdebhelper-perl_13.26_all.deb ...
Unpacking libdebhelper-perl (13.26) ...
Selecting previously unselected package libtool.
Preparing to unpack .../47-libtool_2.5.4-5_all.deb ...
Unpacking libtool (2.5.4-5) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../48-dh-autoreconf_20_all.deb ...
Unpacking dh-autoreconf (20) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../49-libarchive-zip-perl_1.68-1_all.deb ...
Unpacking libarchive-zip-perl (1.68-1) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../50-libfile-stripnondeterminism-perl_1.14.2-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (1.14.2-1) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../51-dh-strip-nondeterminism_1.14.2-1_all.deb ...
Unpacking dh-strip-nondeterminism (1.14.2-1) ...
Selecting previously unselected package libelf1t64:arm64.
Preparing to unpack .../52-libelf1t64_0.192-4_arm64.deb ...
Unpacking libelf1t64:arm64 (0.192-4) ...
Selecting previously unselected package dwz.
Preparing to unpack .../53-dwz_0.15-1+b1_arm64.deb ...
Unpacking dwz (0.15-1+b1) ...
Selecting previously unselected package gettext.
Preparing to unpack .../54-gettext_0.23.1-2+b1_arm64.deb ...
Unpacking gettext (0.23.1-2+b1) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../55-intltool-debian_0.35.0+20060710.6_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.6) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../56-po-debconf_1.0.21+nmu1_all.deb ...
Unpacking po-debconf (1.0.21+nmu1) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../57-debhelper_13.26_all.deb ...
Unpacking debhelper (13.26) ...
Selecting previously unselected package dh-python.
Preparing to unpack .../58-dh-python_6.20250414_all.deb ...
Unpacking dh-python (6.20250414) ...
Selecting previously unselected package libbz2-dev:arm64.
Preparing to unpack .../59-libbz2-dev_1.0.8-6_arm64.deb ...
Unpacking libbz2-dev:arm64 (1.0.8-6) ...
Selecting previously unselected package libconcurrentqueue-dev.
Preparing to unpack .../60-libconcurrentqueue-dev_1.0.4+ds-2_arm64.deb ...
Unpacking libconcurrentqueue-dev (1.0.4+ds-2) ...
Selecting previously unselected package libgflags2.2.
Preparing to unpack .../61-libgflags2.2_2.2.2-2+b1_arm64.deb ...
Unpacking libgflags2.2 (2.2.2-2+b1) ...
Selecting previously unselected package libgflags-dev.
Preparing to unpack .../62-libgflags-dev_2.2.2-2+b1_arm64.deb ...
Unpacking libgflags-dev (2.2.2-2+b1) ...
Selecting previously unselected package libxxhash-dev:arm64.
Preparing to unpack .../63-libxxhash-dev_0.8.3-2_arm64.deb ...
Unpacking libxxhash-dev:arm64 (0.8.3-2) ...
Selecting previously unselected package liblz4-dev:arm64.
Preparing to unpack .../64-liblz4-dev_1.10.0-4_arm64.deb ...
Unpacking liblz4-dev:arm64 (1.10.0-4) ...
Selecting previously unselected package libsnappy1v5:arm64.
Preparing to unpack .../65-libsnappy1v5_1.2.2-1_arm64.deb ...
Unpacking libsnappy1v5:arm64 (1.2.2-1) ...
Selecting previously unselected package librocksdb9.10.
Preparing to unpack .../66-librocksdb9.10_9.10.0-1_arm64.deb ...
Unpacking librocksdb9.10 (9.10.0-1) ...
Selecting previously unselected package libsnappy-dev:arm64.
Preparing to unpack .../67-libsnappy-dev_1.2.2-1_arm64.deb ...
Unpacking libsnappy-dev:arm64 (1.2.2-1) ...
Selecting previously unselected package libzstd-dev:arm64.
Preparing to unpack .../68-libzstd-dev_1.5.7+dfsg-1_arm64.deb ...
Unpacking libzstd-dev:arm64 (1.5.7+dfsg-1) ...
Selecting previously unselected package zlib1g-dev:arm64.
Preparing to unpack .../69-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_arm64.deb ...
Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ...
Selecting previously unselected package librocksdb-dev.
Preparing to unpack .../70-librocksdb-dev_9.10.0-1_arm64.deb ...
Unpacking librocksdb-dev (9.10.0-1) ...
Selecting previously unselected package python3-all.
Preparing to unpack .../71-python3-all_3.13.7-1_arm64.deb ...
Unpacking python3-all (3.13.7-1) ...
Selecting previously unselected package rapidjson-dev.
Preparing to unpack .../72-rapidjson-dev_1.1.0+dfsg2-7.4_all.deb ...
Unpacking rapidjson-dev (1.1.0+dfsg2-7.4) ...
Selecting previously unselected package sbuild-build-depends-main-dummy.
Preparing to unpack .../73-sbuild-build-depends-main-dummy_0.invalid.0_arm64.deb ...
Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ...
Setting up media-types (13.0.0) ...
Setting up libpipeline1:arm64 (1.5.8-1) ...
Setting up libkeyutils1:arm64 (1.6.3-6) ...
Setting up libzstd-dev:arm64 (1.5.7+dfsg-1) ...
Setting up bsdextrautils (2.41.1-1) ...
Setting up libconcurrentqueue-dev (1.0.4+ds-2) ...
Setting up libmagic-mgc (1:5.46-5) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libxml2-16:arm64 (2.14.5+dfsg-0.2) ...
Setting up libdebhelper-perl (13.26) ...
Setting up libbrotli1:arm64 (1.1.0-2+b7) ...
Setting up libuv1t64:arm64 (1.51.0-2) ...
Setting up libmagic1t64:arm64 (1:5.46-5) ...
Setting up libnghttp2-14:arm64 (1.64.0-1.1+b1) ...
Setting up gettext-base (0.23.1-2+b1) ...
Setting up m4 (1.4.19-8) ...
Setting up libcom-err2:arm64 (1.47.2-3+b3) ...
Setting up file (1:5.46-5) ...
Setting up libelf1t64:arm64 (0.192-4) ...
Setting up rapidjson-dev (1.1.0+dfsg2-7.4) ...
Setting up libsnappy1v5:arm64 (1.2.2-1) ...
Setting up libkrb5support0:arm64 (1.21.3-5) ...
Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-9) ...
Setting up autotools-dev (20240727.1) ...
Setting up libjsoncpp26:arm64 (1.9.6-3) ...
Setting up libproc2-0:arm64 (2:4.0.4-9) ...
Setting up libunistring5:arm64 (1.3-2) ...
Setting up autopoint (0.23.1-2) ...
Setting up libncursesw6:arm64 (6.5+20250216-2) ...
Setting up libk5crypto3:arm64 (1.21.3-5) ...
Setting up libsasl2-2:arm64 (2.1.28+dfsg1-9) ...
Setting up autoconf (2.72-3.1) ...
Setting up libnghttp3-9:arm64 (1.8.0-1) ...
Setting up libxxhash-dev:arm64 (0.8.3-2) ...
Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ...
Setting up libffi8:arm64 (3.4.8-2) ...
Setting up dwz (0.15-1+b1) ...
Setting up sensible-utils (0.0.26) ...
Setting up libuchardet0:arm64 (0.0.8-1+b2) ...
Setting up procps (2:4.0.4-9) ...
Setting up libtasn1-6:arm64 (4.20.0-2) ...
Setting up netbase (6.5) ...
Setting up cmake-data (4.1.1-1) ...
Setting up librhash1:arm64 (1.4.6-1) ...
Setting up libkrb5-3:arm64 (1.21.3-5) ...
Setting up libssh2-1t64:arm64 (1.11.1-1) ...
Setting up libarchive13t64:arm64 (3.7.4-4+b1) ...
Setting up readline-common (8.3-2) ...
Setting up libldap2:arm64 (2.6.10+dfsg-1) ...
Setting up libgflags2.2 (2.2.2-2+b1) ...
Setting up libbz2-dev:arm64 (1.0.8-6) ...
Setting up automake (1:1.17-4) ...
update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.14.2-1) ...
Setting up gettext (0.23.1-2+b1) ...
Setting up libtool (2.5.4-5) ...
Setting up libsnappy-dev:arm64 (1.2.2-1) ...
Setting up libidn2-0:arm64 (2.3.8-4) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up libp11-kit0:arm64 (0.25.5-3) ...
Setting up libgssapi-krb5-2:arm64 (1.21.3-5) ...
Setting up libgflags-dev (2.2.2-2+b1) ...
Setting up liblz4-dev:arm64 (1.10.0-4) ...
Setting up libreadline8t64:arm64 (8.3-2) ...
Setting up dh-strip-nondeterminism (1.14.2-1) ...
Setting up groff-base (1.23.0-9) ...
Setting up libpython3.13-stdlib:arm64 (3.13.7-1) ...
Setting up librocksdb9.10 (9.10.0-1) ...
Setting up libpython3-stdlib:arm64 (3.13.7-1) ...
Setting up libgnutls30t64:arm64 (3.8.10-2) ...
Setting up librocksdb-dev (9.10.0-1) ...
Setting up python3.13 (3.13.7-1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libpsl5t64:arm64 (0.21.2-1.1+b1) ...
Setting up python3 (3.13.7-1) ...
Setting up man-db (2.13.1-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-3) ...
Setting up dh-python (6.20250414) ...
Setting up libcurl4t64:arm64 (8.16.0~rc2-2) ...
Setting up python3-all (3.13.7-1) ...
Setting up debhelper (13.26) ...
Setting up cmake (4.1.1-1) ...
Setting up sbuild-build-depends-main-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.41-12) ...

+------------------------------------------------------------------------------+
| Check architectures                          Sat, 30 Aug 2025 20:50:01 +0000 |
+------------------------------------------------------------------------------+

E: dsc: arm64 not in arch list or does not match any arch wildcards: any-amd64 any-i386 -- skipping

+------------------------------------------------------------------------------+
| Cleanup                                      Sat, 30 Aug 2025 20:50:02 +0000 |
+------------------------------------------------------------------------------+

Purging /build/reproducible-path
Not cleaning session: cloned chroot in use
E: dsc: arm64 not in arch list or does not match any arch wildcards: any-amd64 any-i386 -- skipping

+------------------------------------------------------------------------------+
| Summary                                      Sat, 30 Aug 2025 20:50:04 +0000 |
+------------------------------------------------------------------------------+

Build Architecture: arm64
Build Type: binary
Build-Space: n/a
Build-Time: 0
Distribution: sid
Fail-Stage: arch-check
Host Architecture: arm64
Install-Time: 28
Job: /tmp/debusine-fetch-exec-upload-25_3t3o7/sortmerna_4.3.7-2.dsc
Machine Architecture: arm64
Package: sortmerna
Package-Time: 0
Source-Version: 4.3.7-2
Space: n/a
Status: skipped
Version: 4.3.7-2
--------------------------------------------------------------------------------
Finished at 2025-08-30T20:48:58Z
Build needed 00:00:00, no disk space

-------------------------------------------------------------------------------

The above is just how the build ends and not necessarily the most relevant part.
If required, the full build log is available here (for the next 30 days):
https://debusine.debian.net/artifact/2411402/

The most likely cause of build failures is the removed backwards compatibility for
CMake versions earlier than 3.5. You can find additional information in my
debian-devel announcement:

https://lists.debian.org/debian-devel/2025/04/msg00310.html

About the archive rebuild: The build was made on debusine.debian.net,
using sbuild.

You can find the build task here:
https://debusine.debian.net/work-request/154908/

If this is really a bug in one of the build-depends, please use
reassign and affects, so that this is still visible in the BTS web
page for this package.

Thanks,
Timo

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