[Debian-med-packaging] Bug#1139484: marked as done (picard-tools: FTBFS: Test: Test method testCleanSam[1](simple_overhang.sam, 99M1S)(picard.sam.CleanSamTest) produced standard out/err: Ignoring SAM validation error: ERROR::CIGAR_MAPS_OFF_REFERENCE:Read name simple_overhang, Read CIGAR M operator maps off end of reference)

[Debian Bug Tracking System]

Your message dated Tue, 04 Aug 2026 09:04:19 +0000
with message-id <E1wrB4N-0000000A7fG-2dRo at fasolo.debian.org>
and subject line Bug#1139484: fixed in picard-tools 3.5.0+dfsg-1
has caused the Debian Bug report #1139484,
regarding picard-tools: FTBFS: Test: Test method testCleanSam[1](simple_overhang.sam, 99M1S)(picard.sam.CleanSamTest) produced standard out/err: Ignoring SAM validation error: ERROR::CIGAR_MAPS_OFF_REFERENCE:Read name simple_overhang, Read CIGAR M operator maps off end of reference
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

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-- 
1139484: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139484
Debian Bug Tracking System
Contact owner at bugs.debian.org with problems
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From: Santiago Vila <sanvila at debian.org>
Subject: picard-tools: FTBFS: Test: Test method testCleanSam[1](simple_overhang.sam, 99M1S)(picard.sam.CleanSamTest) produced standard out/err: Ignoring SAM validation error: ERROR::CIGAR_MAPS_OFF_REFERENCE:Read name simple_overhang, Read CIGAR M operator maps off end of reference
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Subject: Bug#1139484: fixed in picard-tools 3.5.0+dfsg-1
Date: Tue, 04 Aug 2026 09:04:19 +0000
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