[Debian-med-packaging] Bug#1127540: spoa: FTBFS: dpkg-gensymbols: error: some symbols or patterns disappeared in the symbols file: see diff output below
Santiago Vila
sanvila at debian.org
Mon Feb 9 18:05:56 GMT 2026
Package: src:spoa
Version: 4.1.5-1
Severity: serious
Tags: ftbfs forky sid
Dear maintainer:
During a rebuild of all packages in unstable, this package failed to build.
Below you will find the last part of the build log (probably the most
relevant part, but not necessarily). If required, the full build log
is available here:
https://people.debian.org/~sanvila/build-logs/202602/
About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.
If you cannot reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:spoa, so that this is still
visible in the BTS web page for this package.
Thanks.
--------------------------------------------------------------------------------
[...]
debian/rules clean
dh clean --no-parallel
dh_autoreconf_clean -O--no-parallel
dh_clean -O--no-parallel
debian/rules binary
dh binary --no-parallel
dh_update_autotools_config -O--no-parallel
dh_autoreconf -O--no-parallel
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure -- -DCMAKE_BUILD_TYPE=Release -Dspoa_build_executable=ON -Dspoa_build_tests=ON -Dspoa_use_simde_nonvec=ON -Dspoa_use_simde_openmp=ON -Dspoa_optimize_for_native=OFF -DCMAKE_PREFIX_PATH=/usr/lib/x86_64-linux-gnu/cmake/CpuFeatures -Dspoa_generate_dispatch=ON
cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DCMAKE_BUILD_TYPE=Release -Dspoa_build_executable=ON -Dspoa_build_tests=ON -Dspoa_use_simde_nonvec=ON -Dspoa_use_simde_openmp=ON -Dspoa_optimize_for_native=OFF -DCMAKE_PREFIX_PATH=/usr/lib/x86_64-linux-gnu/cmake/CpuFeatures -Dspoa_generate_dispatch=ON ..
-- The CXX compiler identification is GNU 15.2.0
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
CMake Warning (dev) at /usr/share/cmake-4.2/Modules/FetchContent.cmake:1963 (message):
Calling FetchContent_Populate(simde) is deprecated, call
FetchContent_MakeAvailable(simde) instead. Policy CMP0169 can be set to
OLD to allow FetchContent_Populate(simde) to be called directly for now,
but the ability to call it with declared details will be removed completely
in a future version.
Call Stack (most recent call first):
CMakeLists.txt:53 (FetchContent_Populate)
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning at /usr/share/cmake-4.2/Modules/FetchContent.cmake:2121 (message):
FETCHCONTENT_FULLY_DISCONNECTED is set to true, which requires the source
directory for dependency simde to already be populated. This generally
means it must not be set to true the first time CMake is run in a build
directory. The following source directory should already be populated, but
it doesn't exist:
/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/_deps/simde-src
Policy CMP0170 controls enforcement of this requirement.
Call Stack (most recent call first):
/usr/share/cmake-4.2/Modules/FetchContent.cmake:1988:EVAL:1 (__FetchContent_Populate)
/usr/share/cmake-4.2/Modules/FetchContent.cmake:1988 (cmake_language)
CMakeLists.txt:53 (FetchContent_Populate)
-- Configuring done (0.3s)
-- Generating done (0.0s)
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_EXPORT_NO_PACKAGE_REGISTRY
CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY
spoa_build_executable
-- Build files have been written to: /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build -O--no-parallel
cd obj-x86_64-linux-gnu && make -j1 INSTALL="install --strip-program=true" VERBOSE=1
make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
/usr/bin/cmake -S/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0
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make -f CMakeFiles/Makefile2 all
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make -f CMakeFiles/spoa_avx2.dir/build.make CMakeFiles/spoa_avx2.dir/depend
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cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/CMakeFiles/spoa_exe.dir/DependInfo.cmake "--color=" spoa_exe
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make -f CMakeFiles/spoa_exe.dir/build.make CMakeFiles/spoa_exe.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 82%] Building CXX object CMakeFiles/spoa_exe.dir/src/main.cpp.o
/usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_GENERATE_DISPATCH -DSPOA_USE_SIMDE -DSTACK_LINE_READER_BUFFER_SIZE=1024 -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/_deps/simde-src -isystem /usr/include/cpu_features -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -MD -MT CMakeFiles/spoa_exe.dir/src/main.cpp.o -MF CMakeFiles/spoa_exe.dir/src/main.cpp.o.d -o CMakeFiles/spoa_exe.dir/src/main.cpp.o -c /<<PKGBUILDDIR>>/src/main.cpp
[ 88%] Linking CXX executable bin/spoa
/usr/bin/cmake -E cmake_link_script CMakeFiles/spoa_exe.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/spoa_exe.dir/link.d CMakeFiles/spoa_exe.dir/src/main.cpp.o -o bin/spoa -Wl,-rpath,/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/lib: lib/libspoa.so.7.0.0 -lz /usr/lib/x86_64-linux-gnu/libcpu_features.a -ldl
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 88%] Built target spoa_exe
make -f CMakeFiles/spoa_test.dir/build.make CMakeFiles/spoa_test.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/CMakeFiles/spoa_test.dir/DependInfo.cmake "--color=" spoa_test
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make -f CMakeFiles/spoa_test.dir/build.make CMakeFiles/spoa_test.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 94%] Building CXX object CMakeFiles/spoa_test.dir/test/spoa_test.cpp.o
/usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_GENERATE_DISPATCH -DSPOA_USE_SIMDE -DSTACK_LINE_READER_BUFFER_SIZE=1024 -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/_deps/simde-src -isystem /usr/include/cpu_features -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -DGTEST_HAS_PTHREAD=1 -MD -MT CMakeFiles/spoa_test.dir/test/spoa_test.cpp.o -MF CMakeFiles/spoa_test.dir/test/spoa_test.cpp.o.d -o CMakeFiles/spoa_test.dir/test/spoa_test.cpp.o -c /<<PKGBUILDDIR>>/test/spoa_test.cpp
[100%] Linking CXX executable bin/spoa_test
/usr/bin/cmake -E cmake_link_script CMakeFiles/spoa_test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/spoa_test.dir/link.d CMakeFiles/spoa_test.dir/test/spoa_test.cpp.o -o bin/spoa_test -Wl,-rpath,/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/lib lib/libspoa.so.7.0.0 -lz /usr/lib/x86_64-linux-gnu/libcpu_features.a -ldl /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[100%] Built target spoa_test
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/CMakeFiles 0
make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<PKGBUILDDIR>>'
`find . -name spoa_test`
Running main() from ./googletest/src/gtest_main.cc
[==========] Running 22 tests from 2 test suites.
[----------] Global test environment set-up.
[----------] 3 tests from SpoaAlignmentTest
[ RUN ] SpoaAlignmentTest.TypeError
[ OK ] SpoaAlignmentTest.TypeError (0 ms)
[ RUN ] SpoaAlignmentTest.EmptyInput
[ OK ] SpoaAlignmentTest.EmptyInput (0 ms)
[ RUN ] SpoaAlignmentTest.LargeInput
[ OK ] SpoaAlignmentTest.LargeInput (0 ms)
[----------] 3 tests from SpoaAlignmentTest (0 ms total)
[----------] 19 tests from SpoaTest
[ RUN ] SpoaTest.Clear
[ OK ] SpoaTest.Clear (61 ms)
[ RUN ] SpoaTest.Local
[ OK ] SpoaTest.Local (31 ms)
[ RUN ] SpoaTest.LocalAffine
[ OK ] SpoaTest.LocalAffine (45 ms)
[ RUN ] SpoaTest.LocalConvex
[ OK ] SpoaTest.LocalConvex (50 ms)
[ RUN ] SpoaTest.LocalWithQualities
[ OK ] SpoaTest.LocalWithQualities (30 ms)
[ RUN ] SpoaTest.LocalAffineWithQualities
[ OK ] SpoaTest.LocalAffineWithQualities (45 ms)
[ RUN ] SpoaTest.LocalConvexWithQualities
[ OK ] SpoaTest.LocalConvexWithQualities (49 ms)
[ RUN ] SpoaTest.Global
[ OK ] SpoaTest.Global (30 ms)
[ RUN ] SpoaTest.GlobalAffine
[ OK ] SpoaTest.GlobalAffine (43 ms)
[ RUN ] SpoaTest.GlobalConvex
[ OK ] SpoaTest.GlobalConvex (48 ms)
[ RUN ] SpoaTest.GlobalWithQualities
[ OK ] SpoaTest.GlobalWithQualities (30 ms)
[ RUN ] SpoaTest.GlobalAffineWithQualities
[ OK ] SpoaTest.GlobalAffineWithQualities (43 ms)
[ RUN ] SpoaTest.GlobalConvexWithQualities
[ OK ] SpoaTest.GlobalConvexWithQualities (48 ms)
[ RUN ] SpoaTest.SemiGlobal
[ OK ] SpoaTest.SemiGlobal (29 ms)
[ RUN ] SpoaTest.SemiGlobalAffine
[ OK ] SpoaTest.SemiGlobalAffine (44 ms)
[ RUN ] SpoaTest.SemiGlobalConvex
[ OK ] SpoaTest.SemiGlobalConvex (48 ms)
[ RUN ] SpoaTest.SemiGlobalWithQualities
[ OK ] SpoaTest.SemiGlobalWithQualities (29 ms)
[ RUN ] SpoaTest.SemiGlobalAffineWithQualities
[ OK ] SpoaTest.SemiGlobalAffineWithQualities (43 ms)
[ RUN ] SpoaTest.SemiGlobalConvexWithQualities
[ OK ] SpoaTest.SemiGlobalConvexWithQualities (48 ms)
[----------] 19 tests from SpoaTest (803 ms total)
[----------] Global test environment tear-down
[==========] 22 tests from 2 test suites ran. (803 ms total)
[ PASSED ] 22 tests.
`find . -name spoa | grep bin` test/data/sample.fastq.gz
>Consensus LN:i:496
AATGATGCGCTTTGTTGGCGCGGTGGCTTGATGCAGGGGCTAATCGACCTCTGGCAACCACTTTTCCATGACAGGAGTTGAATATGGCATTCAGTAATCCCTTCGATGATCCGCAGGGAGCGTTTTACATATTGCGCAATGCGCAGGGGCAATTCAGTCTGTGGCCGCAACAATGCGTCTTACCGGCAGGCTGGGACATTGTGTGTCAGCCGCAGTCACAGGCGTCCTGCCAGCAGTGGCTGGAAGCCCACTGGCGTACTCTGACACCGACGAATTTTACCCAGTTGCAGGAGGCACAATGAGCCAGCATTTACCTTTGGTCGCCGCACAGCCCGGCATCTGGATGGCAGAAAAACTGTCAGAATTACCCTCCGCCTGGAGCGTGGCGCATTACGTTGAGTTAACCGGAGAGGTTGATTCGCCATTACTGGCCCGCGCGGTGGTTGCCGGACTAGCGCAAGCAGATACGCTTTACACGCGCAACCAAGGATTTCGG
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
create-stamp debian/debhelper-build-stamp
dh_testroot -O--no-parallel
dh_prep -O--no-parallel
dh_auto_install -O--no-parallel
cd obj-x86_64-linux-gnu && make -j1 install DESTDIR=/<<PKGBUILDDIR>>/debian/tmp AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true"
make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
/usr/bin/cmake -S/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0
make -f CMakeFiles/Makefile2 preinstall
make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make[2]: Nothing to be done for 'preinstall'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "Release"
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/libspoa.so.7.0.0
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/libspoa.so
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/libspoa_static.a
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/spoa
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/spoa/spoa.hpp
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/spoa/graph.hpp
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/spoa/alignment_engine.hpp
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/spoa/version.hpp
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/spoa/spoaTargets.cmake
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/spoa/spoaTargets-release.cmake
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/spoa/spoaConfig.cmake
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/spoa/spoaConfigVersion.cmake
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/bin/spoa
-- Set non-toolchain portion of runtime path of "/<<PKGBUILDDIR>>/debian/tmp/usr/bin/spoa" to ""
make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install
d-shlibmove --commit \
--multiarch \
--devunversioned \
--exclude-la \
--exclude-a \
--movedev debian/tmp/usr/include/spoa usr/include \
--movedev debian/tmp/usr/lib/x86_64-linux-gnu/cmake /usr/lib/x86_64-linux-gnu \
debian/tmp/usr/lib/*/*.so
Library package automatic movement utility
set -e
install -d -m 755 debian/libspoa-dev/usr/lib/x86_64-linux-gnu
install -d -m 755 debian/libspoa7.0.0/usr/lib/x86_64-linux-gnu
mv debian/tmp/usr/lib/x86_64-linux-gnu/libspoa.so debian/libspoa-dev/usr/lib/x86_64-linux-gnu
mv /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/libspoa.so.7.0.0 debian/libspoa7.0.0/usr/lib/x86_64-linux-gnu
PKGDEV=libspoa-dev
PKGSHL=libspoa7.0.0
install -d -m 755 debian/libspoa-dev/usr/include
mv debian/tmp/usr/include/spoa debian/libspoa-dev/usr/include
install -d -m 755 debian/libspoa-dev//usr/lib/x86_64-linux-gnu
mv debian/tmp/usr/lib/x86_64-linux-gnu/cmake debian/libspoa-dev//usr/lib/x86_64-linux-gnu
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -O--no-parallel
dh_installchangelogs -O--no-parallel
dh_installexamples -O--no-parallel
dh_installman -O--no-parallel
dh_installsystemduser -O--no-parallel
dh_perl -O--no-parallel
dh_link -O--no-parallel
dh_strip_nondeterminism -O--no-parallel
dh_compress -O--no-parallel
dh_fixperms -O--no-parallel
dh_missing -O--no-parallel
dh_dwz -a -O--no-parallel
dh_strip -a -O--no-parallel
dh_makeshlibs -a -O--no-parallel
dpkg-gensymbols: warning: some new symbols appeared in the symbols file: see diff output below
dpkg-gensymbols: error: some symbols or patterns disappeared in the symbols file: see diff output below
dpkg-gensymbols: warning: debian/libspoa7.0.0/DEBIAN/symbols does not match completely debian/libspoa7.0.0.symbols.amd64
--- debian/libspoa7.0.0.symbols.amd64 (libspoa7.0.0_4.1.5-1_amd64)
+++ dpkg-gensymbolsAg564Y 2026-02-09 15:48:45.403228786 +0000
@@ -28,8 +28,8 @@
GetXCR0Eax at Base 4.0.7
StackLineReader_Initialize at Base 4.0.7
StackLineReader_NextLine at Base 4.0.7
- (optional)_ZGVN6cereal6detail12StaticObjectINS0_18PolymorphicCastersEE8instanceE at Base 4.0.5
- (optional)_ZGVZN6cereal6detail12StaticObjectINS0_18PolymorphicCastersEE6createEvE1t at Base 4.0.5
+#MISSING: 4.1.5-1# (optional)_ZGVN6cereal6detail12StaticObjectINS0_18PolymorphicCastersEE8instanceE at Base 4.0.5
+#MISSING: 4.1.5-1# (optional)_ZGVZN6cereal6detail12StaticObjectINS0_18PolymorphicCastersEE6createEvE1t at Base 4.0.5
_ZN4spoa15AlignmentEngine5AlignERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS_5GraphEPi at Base 4.0.5
_ZN4spoa15AlignmentEngine6CreateENS_13AlignmentTypeEaaa at Base 4.0.5
_ZN4spoa15AlignmentEngine6CreateENS_13AlignmentTypeEaaaa at Base 4.0.5
@@ -120,10 +120,10 @@
_ZN4spoa5GraphD1Ev at Base 1.1.3
_ZN4spoa5GraphD2Ev at Base 1.1.3
_ZN4spoa7VersionB5cxx11Ev at Base 4.1.4
- (optional)_ZN6cereal6detail12StaticObjectINS0_18PolymorphicCastersEE6createEv at Base 4.0.5
- (optional)_ZN6cereal6detail12StaticObjectINS0_18PolymorphicCastersEE8instanceE at Base 4.0.5
- (optional)_ZN6cereal6detail18PolymorphicCastersD1Ev at Base 4.0.5
- (optional)_ZN6cereal6detail18PolymorphicCastersD2Ev at Base 4.0.5
+#MISSING: 4.1.5-1# (optional)_ZN6cereal6detail12StaticObjectINS0_18PolymorphicCastersEE6createEv at Base 4.0.5
+#MISSING: 4.1.5-1# (optional)_ZN6cereal6detail12StaticObjectINS0_18PolymorphicCastersEE8instanceE at Base 4.0.5
+#MISSING: 4.1.5-1# (optional)_ZN6cereal6detail18PolymorphicCastersD1Ev at Base 4.0.5
+#MISSING: 4.1.5-1# (optional)_ZN6cereal6detail18PolymorphicCastersD2Ev at Base 4.0.5
_ZNK4spoa15AlignmentEngine23WorstCaseAlignmentScoreEll at Base 4.0.5
_ZNK4spoa5Graph15ExtractSubgraphEPKNS0_4NodeES3_ at Base 4.0.5
_ZNK4spoa5Graph15UpdateAlignmentERKSt6vectorIPKNS0_4NodeESaIS4_EEPS1_ISt4pairIiiESaISA_EE at Base 4.0.5
@@ -134,48 +134,50 @@
_ZNK4spoa5Graph8PrintDotERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 4.0.5
_ZNK4spoa5Graph8SubgraphEjjPSt6vectorIPKNS0_4NodeESaIS4_EE at Base 4.0.5
_ZNKSt5ctypeIcE8do_widenEc at Base 1.1.5
- (optional)_ZNSt10_HashtableISt10type_indexSt4pairIKS0_St13unordered_mapIS0_St6vectorIPKN6cereal6detail17PolymorphicCasterESaIS9_EESt4hashIS0_ESt8equal_toIS0_ESaIS1_IS2_SB_EEEESaISJ_ENSt8__detail10_Select1stESF_SD_NSL_18_Mod_range_hashingENSL_20_Default_ranged_hashENSL_20_Prime_rehash_policyENSL_17_Hashtable_traitsILb0ELb0ELb1EEEE5clearEv at Base 4.0.5
+#MISSING: 4.1.5-1# (optional)_ZNSt10_HashtableISt10type_indexSt4pairIKS0_St13unordered_mapIS0_St6vectorIPKN6cereal6detail17PolymorphicCasterESaIS9_EESt4hashIS0_ESt8equal_toIS0_ESaIS1_IS2_SB_EEEESaISJ_ENSt8__detail10_Select1stESF_SD_NSL_18_Mod_range_hashingENSL_20_Default_ranged_hashENSL_20_Prime_rehash_policyENSL_17_Hashtable_traitsILb0ELb0ELb1EEEE5clearEv at Base 4.0.5
(optional)_ZNSt10_HashtableIjjSaIjENSt8__detail9_IdentityESt8equal_toIjESt4hashIjENS1_18_Mod_range_hashingENS1_20_Default_ranged_hashENS1_20_Prime_rehash_policyENS1_17_Hashtable_traitsILb0ELb1ELb1EEEE15_M_emplace_uniqIJRKjEEESt4pairINS1_14_Node_iteratorIjLb1ELb0EEEbEDpOT_ at Base 4.1.5
(optional)_ZNSt10_HashtableIjjSaIjENSt8__detail9_IdentityESt8equal_toIjESt4hashIjENS1_18_Mod_range_hashingENS1_20_Default_ranged_hashENS1_20_Prime_rehash_policyENS1_17_Hashtable_traitsILb0ELb1ELb1EEEE21_M_insert_unique_nodeEmmPNS1_10_Hash_nodeIjLb0EEEm at Base 4.1.4
_ZNSt13_Bvector_baseISaIbEE13_M_deallocateEv at Base 1.1.3
- (optional)_ZNSt5dequeIPKN4spoa5Graph4NodeESaIS4_EE16_M_push_back_auxIJRKS4_EEEvDpOT_ at Base 4.0.5
+#MISSING: 4.1.5-1# (optional)_ZNSt5dequeIPKN4spoa5Graph4NodeESaIS4_EE16_M_push_back_auxIJRKS4_EEEvDpOT_ at Base 4.0.5
(optional)_ZNSt5dequeIPKN4spoa5Graph4NodeESaIS4_EE17_M_reallocate_mapEmb at Base 4.1.5
- (optional)_ZNSt5dequeIPN4spoa5Graph4NodeESaIS3_EE16_M_push_back_auxIJRKS3_EEEvDpOT_ at Base 4.0.5
+#MISSING: 4.1.5-1# (optional)_ZNSt5dequeIPN4spoa5Graph4NodeESaIS3_EE16_M_push_back_auxIJRKS3_EEEvDpOT_ at Base 4.0.5
_ZNSt5dequeIPN4spoa5Graph4NodeESaIS3_EE17_M_reallocate_mapEmb at Base 4.0.5
_ZNSt6vectorIN4spoa7StorageESaIS1_EE17_M_default_appendEm at Base 4.1.4
(optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_appendIJRS5_EEEvDpOT_ at Base 4.1.4
- (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJRS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_ at Base 1.1.3
- _ZNSt6vectorIPKN4spoa5Graph4NodeESaIS4_EE14_M_fill_insertEN9__gnu_cxx17__normal_iteratorIPS4_S6_EEmRKS4_ at Base 4.0.5
+#MISSING: 4.1.5-1# (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJRS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_ at Base 1.1.3
+#MISSING: 4.1.5-1# _ZNSt6vectorIPKN4spoa5Graph4NodeESaIS4_EE14_M_fill_insertEN9__gnu_cxx17__normal_iteratorIPS4_S6_EEmRKS4_ at Base 4.0.5
(optional)_ZNSt6vectorIPN4spoa5Graph4EdgeESaIS3_EE17_M_realloc_appendIJS3_EEEvDpOT_ at Base 4.1.4
- (optional)_ZNSt6vectorIPN4spoa5Graph4EdgeESaIS3_EE17_M_realloc_insertIJS3_EEEvN9__gnu_cxx17__normal_iteratorIPS3_S5_EEDpOT_ at Base 4.0.5
- (optional)_ZNSt6vectorIPN4spoa5Graph4NodeESaIS3_EE12emplace_backIJRS3_EEEvDpOT_ at Base 4.0.5
- (optional)_ZNSt6vectorIPN4spoa5Graph4NodeESaIS3_EE12emplace_backIJS3_EEEvDpOT_ at Base 4.0.5
+#MISSING: 4.1.5-1# (optional)_ZNSt6vectorIPN4spoa5Graph4EdgeESaIS3_EE17_M_realloc_insertIJS3_EEEvN9__gnu_cxx17__normal_iteratorIPS3_S5_EEDpOT_ at Base 4.0.5
+#MISSING: 4.1.5-1# (optional)_ZNSt6vectorIPN4spoa5Graph4NodeESaIS3_EE12emplace_backIJRS3_EEEvDpOT_ at Base 4.0.5
+#MISSING: 4.1.5-1# (optional)_ZNSt6vectorIPN4spoa5Graph4NodeESaIS3_EE12emplace_backIJS3_EEEvDpOT_ at Base 4.0.5
(optional)_ZNSt6vectorIPN4spoa5Graph4NodeESaIS3_EE17_M_realloc_appendIJRKS3_EEEvDpOT_ at Base 4.1.4
- (optional)_ZNSt6vectorIPN4spoa5Graph4NodeESaIS3_EE17_M_realloc_appendIJRS3_EEEvDpOT_ at Base 4.1.4
- (optional)_ZNSt6vectorIPN4spoa5Graph4NodeESaIS3_EE17_M_realloc_insertIJRKS3_EEEvN9__gnu_cxx17__normal_iteratorIPS3_S5_EEDpOT_ at Base 4.0.5
- (optional)_ZNSt6vectorIPN4spoa5Graph4NodeESaIS3_EED1Ev at Base 4.1.4
- (optional)_ZNSt6vectorIPN4spoa5Graph4NodeESaIS3_EED2Ev at Base 4.1.4
- (optional)_ZNSt6vectorISt10unique_ptrIN4spoa5Graph4EdgeESt14default_deleteIS3_EESaIS6_EE17_M_realloc_insertIJPS3_EEEvN9__gnu_cxx17__normal_iteratorIPS6_S8_EEDpOT_ at Base 4.0.7
- (optional)_ZNSt6vectorISt10unique_ptrIN4spoa5Graph4NodeESt14default_deleteIS3_EESaIS6_EE17_M_realloc_insertIJPS3_EEEvN9__gnu_cxx17__normal_iteratorIPS6_S8_EEDpOT_ at Base 4.0.5
- (optional)_ZNSt6vectorISt4pairIiiESaIS1_EE12emplace_backIJRjiEEEvDpOT_ at Base 4.0.5
- (optional)_ZNSt6vectorISt4pairIiiESaIS1_EE12emplace_backIJijEEEvDpOT_ at Base 3.0.0
- (optional)_ZNSt6vectorISt4pairIiiESaIS1_EE12emplace_backIJjiEEEvDpOT_ at Base 3.4.0
- (optional)_ZNSt6vectorISt4pairIiiESaIS1_EE12emplace_backIJjjEEEvDpOT_ at Base 3.0.0
+#MISSING: 4.1.5-1# (optional)_ZNSt6vectorIPN4spoa5Graph4NodeESaIS3_EE17_M_realloc_appendIJRS3_EEEvDpOT_ at Base 4.1.4
+#MISSING: 4.1.5-1# (optional)_ZNSt6vectorIPN4spoa5Graph4NodeESaIS3_EE17_M_realloc_insertIJRKS3_EEEvN9__gnu_cxx17__normal_iteratorIPS3_S5_EEDpOT_ at Base 4.0.5
+#MISSING: 4.1.5-1# (optional)_ZNSt6vectorIPN4spoa5Graph4NodeESaIS3_EED1Ev at Base 4.1.4
+#MISSING: 4.1.5-1# (optional)_ZNSt6vectorIPN4spoa5Graph4NodeESaIS3_EED2Ev at Base 4.1.4
+#MISSING: 4.1.5-1# (optional)_ZNSt6vectorISt10unique_ptrIN4spoa5Graph4EdgeESt14default_deleteIS3_EESaIS6_EE17_M_realloc_insertIJPS3_EEEvN9__gnu_cxx17__normal_iteratorIPS6_S8_EEDpOT_ at Base 4.0.7
+#MISSING: 4.1.5-1# (optional)_ZNSt6vectorISt10unique_ptrIN4spoa5Graph4NodeESt14default_deleteIS3_EESaIS6_EE17_M_realloc_insertIJPS3_EEEvN9__gnu_cxx17__normal_iteratorIPS6_S8_EEDpOT_ at Base 4.0.5
+#MISSING: 4.1.5-1# (optional)_ZNSt6vectorISt4pairIiiESaIS1_EE12emplace_backIJRjiEEEvDpOT_ at Base 4.0.5
+#MISSING: 4.1.5-1# (optional)_ZNSt6vectorISt4pairIiiESaIS1_EE12emplace_backIJijEEEvDpOT_ at Base 3.0.0
+#MISSING: 4.1.5-1# (optional)_ZNSt6vectorISt4pairIiiESaIS1_EE12emplace_backIJjiEEEvDpOT_ at Base 3.4.0
+#MISSING: 4.1.5-1# (optional)_ZNSt6vectorISt4pairIiiESaIS1_EE12emplace_backIJjjEEEvDpOT_ at Base 3.0.0
(optional)_ZNSt6vectorISt4pairIiiESaIS1_EE17_M_realloc_appendIJRjiEEEvDpOT_ at Base 4.1.4
- (optional)_ZNSt6vectorISt4pairIiiESaIS1_EE17_M_realloc_appendIJijEEEvDpOT_ at Base 4.1.4
- (optional)_ZNSt6vectorISt4pairIiiESaIS1_EE17_M_realloc_appendIJjjEEEvDpOT_ at Base 4.1.4
- (optional)_ZNSt6vectorISt4pairIiiESaIS1_EE17_M_realloc_insertIJRjiEEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_ at Base 4.1.4
- (optional)_ZNSt6vectorISt4pairIiiESaIS1_EE17_M_realloc_insertIJijEEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_ at Base 4.1.4
- _ZNSt6vectorIiSaIiEE14_M_fill_insertEN9__gnu_cxx17__normal_iteratorIPiS1_EEmRKi at Base 1.1.3
- (optional)_ZNSt6vectorIiSaIiEED1Ev at Base 4.1.4
- (optional)_ZNSt6vectorIiSaIiEED2Ev at Base 4.1.4
- (optional)_ZNSt6vectorIjSaIjEE12emplace_backIJjEEEvDpOT_ at Base 3.4.0
- _ZNSt6vectorIjSaIjEE14_M_fill_insertEN9__gnu_cxx17__normal_iteratorIPjS1_EEmRKj at Base 1.1.3
- (optional)_ZNSt6vectorIjSaIjEE17_M_realloc_appendIJiEEEvDpOT_ at Base 4.1.4
- (optional)_ZNSt6vectorIjSaIjEE17_M_realloc_appendIJjEEEvDpOT_ at Base 4.1.4
- (optional)_ZNSt6vectorIjSaIjEE17_M_realloc_insertIJiEEEvN9__gnu_cxx17__normal_iteratorIPjS1_EEDpOT_ at Base 4.0.5
- (optional)_ZNSt6vectorIjSaIjEED1Ev at Base 4.1.4
- (optional)_ZNSt6vectorIjSaIjEED2Ev at Base 4.1.4
+#MISSING: 4.1.5-1# (optional)_ZNSt6vectorISt4pairIiiESaIS1_EE17_M_realloc_appendIJijEEEvDpOT_ at Base 4.1.4
+#MISSING: 4.1.5-1# (optional)_ZNSt6vectorISt4pairIiiESaIS1_EE17_M_realloc_appendIJjjEEEvDpOT_ at Base 4.1.4
+#MISSING: 4.1.5-1# (optional)_ZNSt6vectorISt4pairIiiESaIS1_EE17_M_realloc_insertIJRjiEEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_ at Base 4.1.4
+#MISSING: 4.1.5-1# (optional)_ZNSt6vectorISt4pairIiiESaIS1_EE17_M_realloc_insertIJijEEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_ at Base 4.1.4
+ _ZNSt6vectorIiSaIiEE14_M_fill_appendEmRKi at Base 4.1.5-1
+#MISSING: 4.1.5-1# _ZNSt6vectorIiSaIiEE14_M_fill_insertEN9__gnu_cxx17__normal_iteratorIPiS1_EEmRKi at Base 1.1.3
+#MISSING: 4.1.5-1# (optional)_ZNSt6vectorIiSaIiEED1Ev at Base 4.1.4
+#MISSING: 4.1.5-1# (optional)_ZNSt6vectorIiSaIiEED2Ev at Base 4.1.4
+#MISSING: 4.1.5-1# (optional)_ZNSt6vectorIjSaIjEE12emplace_backIJjEEEvDpOT_ at Base 3.4.0
+ _ZNSt6vectorIjSaIjEE14_M_fill_appendEmRKj at Base 4.1.5-1
+#MISSING: 4.1.5-1# _ZNSt6vectorIjSaIjEE14_M_fill_insertEN9__gnu_cxx17__normal_iteratorIPjS1_EEmRKj at Base 1.1.3
+#MISSING: 4.1.5-1# (optional)_ZNSt6vectorIjSaIjEE17_M_realloc_appendIJiEEEvDpOT_ at Base 4.1.4
+#MISSING: 4.1.5-1# (optional)_ZNSt6vectorIjSaIjEE17_M_realloc_appendIJjEEEvDpOT_ at Base 4.1.4
+#MISSING: 4.1.5-1# (optional)_ZNSt6vectorIjSaIjEE17_M_realloc_insertIJiEEEvN9__gnu_cxx17__normal_iteratorIPjS1_EEDpOT_ at Base 4.0.5
+#MISSING: 4.1.5-1# (optional)_ZNSt6vectorIjSaIjEED1Ev at Base 4.1.4
+#MISSING: 4.1.5-1# (optional)_ZNSt6vectorIjSaIjEED2Ev at Base 4.1.4
_ZTIN4spoa15AlignmentEngineE at Base 1.1.3
_ZTIN4spoa19SimdAlignmentEngineILNS_12ArchitectureE0EEE at Base 4.0.5
_ZTIN4spoa19SimdAlignmentEngineILNS_12ArchitectureE1EEE at Base 4.0.5
@@ -191,4 +193,4 @@
_ZTVN4spoa19SimdAlignmentEngineILNS_12ArchitectureE1EEE at Base 4.0.5
_ZTVN4spoa19SimdAlignmentEngineILNS_12ArchitectureE2EEE at Base 4.0.5
_ZTVN4spoa19SisdAlignmentEngineE at Base 1.1.3
- (optional)_ZZN6cereal6detail12StaticObjectINS0_18PolymorphicCastersEE6createEvE1t at Base 4.0.5
+#MISSING: 4.1.5-1# (optional)_ZZN6cereal6detail12StaticObjectINS0_18PolymorphicCastersEE6createEvE1t at Base 4.0.5
dh_makeshlibs: error: failing due to earlier errors
make: *** [debian/rules:24: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess failed with exit status 2
--------------------------------------------------------------------------------
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