[Debian-med-packaging] Bug#1125648: marked as done (libsbml: FTBFS: dpkg-shlibdeps: error: cannot read /<<PKGBUILDDIR>>/debian/tmp/usr/lib//octave/site/oct//*.mex: No such file or directory)

Fri Feb 13 08:47:35 GMT 2026

Hi,

I fixed Bug#1125648 in version 5.20.5+dfsg-2 of the libsbml package. The 
bug was caused by the erroneous setting of the CMAKE_INSTALL_LIBDIR CMake 
variable at the configuration step.

A new upstream version (5.21.0) of libsbml is available. I did not check 
to see if this version fixes the issue.

My fix in debian/rules addresses the symptom instead of curing the 
disease, and will need to be removed at some point in the future.

Best,

Rafael

* Debian Bug Tracking System <owner at bugs.debian.org> [2026-02-08 20:57]:

> Your message dated Sun, 08 Feb 2026 20:54:25 +0000 
> with message-id <E1vpBnV-0000000Aqqy-0zyi at fasolo.debian.org> 
> and subject line Bug#1125648: fixed in libsbml 5.20.5+dfsg-2 
> has caused the Debian Bug report #1125648, 
> regarding libsbml: FTBFS: dpkg-shlibdeps: error: cannot read /<<PKGBUILDDIR>>/debian/tmp/usr/lib/*/octave/site/oct/*/*.mex: No such file or directory 
> to be marked as done.
>
> This means that you claim that the problem has been dealt with. 
> If this is not the case it is now your responsibility to reopen the 
> Bug report if necessary, and/or fix the problem forthwith.
>
> (NB: If you are a system administrator and have no idea what this 
> message is talking about, this may indicate a serious mail system 
> misconfiguration somewhere. Please contact owner at bugs.debian.org 
> immediately.)
>
>
> -- 
> 1125648: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1125648
> Debian Bug Tracking System
> Contact owner at bugs.debian.org with problems

> From: Santiago Vila <sanvila at debian.org>
> Subject: libsbml: FTBFS: dpkg-shlibdeps: error: cannot read
> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/*/octave/site/oct/*/*.mex: No such file 
> or directory 
> Date: Thu, 15 Jan 2026 16:54:18 +0000 
> To: Debian BTS <submit at bugs.debian.org> 
> Message-Id: <E1vgQby-004mlS-10 at paradis.debian.org>
>
> Package: src:libsbml
> Version: 5.20.5+dfsg-1
> Severity: serious
> Tags: ftbfs forky sid
>
> Dear maintainer:
>
> During a rebuild of all packages in unstable, this package failed to build.
>
> Below you will find the last part of the build log (probably the most 
> relevant part, but not necessarily). If required, the full build log 
> is available here:
>
> https://people.debian.org/~sanvila/build-logs/202601/
>
> About the archive rebuild: The build was made on virtual machines from AWS, 
> using sbuild and a reduced chroot with only build-essential packages.
>
> If you cannot reproduce the bug please contact me privately, as I 
> am willing to provide ssh access to a virtual machine where the bug is 
> fully reproducible.
>
> If this is really a bug in one of the build-depends, please use 
> reassign and add an affects on src:libsbml, so that this is still 
> visible in the BTS web page for this package.
>
> Thanks.
>
> --------------------------------------------------------------------------------
> [...]
> debian/rules clean
> dh clean --builddir=build --buildsystem=cmake --without autoreconf --no-parallel
>   dh_auto_clean -O--builddir=build -O--buildsystem=cmake -O--no-parallel
>   debian/rules execute_after_dh_auto_clean
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> ### the clean target of the libsbml makefile is highly b0rken ###
> ### the switch to cmake didn't result in great approvements ###
> ### still inline changes of files ###
> ### very ugly ###
> rm -rf build docs/formatted docs/src/doxygen-version-specific.txt docs/src/doxygen-config-cpp.txt \
> docs/src/doxygen-config-csharp.txt docs/src/doxygen-config-perl.txt docs/src/doxygen-config-python.txt \
> docs/src/java-substitutions/libsbmlConstants.java docs/src/libsbml-installation.html docs/src/perlmod/DoxyDocs.pm \
> docs/src/perlmod/DoxyStructure.pm docs/src/perlmod/Makefile docs/src/perlmod/doxyrules.make \
> src/bindings/matlab/runTests.log docs/src/doxygen-config-c.txt src/bindings/matlab/*.mex* docs/src/perlmod \
> docs/src/doxygen_sqlite3.db docs/src/libsbml.py docs/src/common-text/libsbml-version.html
> 
> [... snipped ...]
> 
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/validator/L2v2CompatibilityValidator.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/validator/L2v3CompatibilityValidator.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/validator/L2v4CompatibilityValidator.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/validator/L3v1CompatibilityValidator.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/validator/L3v2CompatibilityValidator.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/validator/MathMLConsistencyValidator.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/validator/ModelingPracticeValidator.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/validator/OverdeterminedValidator.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/validator/SBMLExternalValidator.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/validator/SBMLInternalValidator.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/validator/SBMLValidator.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/validator/SBOConsistencyValidator.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/validator/StrictUnitConsistencyValidator.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/validator/UnitConsistencyValidator.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/validator/VConstraint.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/validator/Validator.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/xml/ExpatAttributes.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/xml/ExpatHandler.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/xml/ExpatParser.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/xml/LibXMLAttributes.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/xml/LibXMLHandler.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/xml/LibXMLNamespaces.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/xml/LibXMLParser.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/xml/LibXMLTranscode.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/xml/XMLAttributes.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/xml/XMLBuffer.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/xml/XMLConstructorException.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/xml/XMLError.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/xml/XMLErrorLog.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/xml/XMLExtern.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/xml/XMLFileBuffer.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/xml/XMLHandler.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/xml/XMLInputStream.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/xml/XMLLogOverride.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/xml/XMLMemoryBuffer.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/xml/XMLNamespaces.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/xml/XMLNode.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/xml/XMLOutputStream.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/xml/XMLParser.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/xml/XMLToken.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/xml/XMLTokenizer.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/xml/XMLTriple.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/xml/XercesAttributes.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/xml/XercesHandler.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/xml/XercesNamespaces.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/xml/XercesParser.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/xml/XercesTranscode.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/AlgebraicRule.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/AssignmentRule.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/Compartment.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/CompartmentType.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/Constraint.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/Delay.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/Event.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/EventAssignment.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/ExpectedAttributes.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/FunctionDefinition.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/InitialAssignment.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/KineticLaw.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/ListOf.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/LocalParameter.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/Model.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/ModifierSpeciesReference.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/Parameter.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/Priority.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/RateRule.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/Reaction.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/Rule.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/SBMLConstructorException.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/SBMLDocument.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/SBMLError.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/SBMLErrorLog.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/SBMLErrorTable.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/SBMLNamespaces.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/SBMLReader.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/SBMLTransforms.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/SBMLTypeCodes.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/SBMLTypes.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/SBMLVisitor.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/SBMLWriter.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/SBO.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/SBase.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/SimpleSpeciesReference.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/Species.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/SpeciesReference.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/SpeciesType.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/StoichiometryMath.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/SyntaxChecker.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/Trigger.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/Unit.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/UnitDefinition.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/UnitKind.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/common/libsbml-config-common.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/common/libsbml-config-packages.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/common/libsbml-namespace.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/common/libsbml-package.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/common/libsbml-version.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/extension/RegisterExtensions.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/libsbml.so.5.20.5
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/libsbml.so.5
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/libsbml.so
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/sbml-targets.cmake
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/sbml-targets-none.cmake
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/sbml-config-version.cmake
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/sbml-config.cmake
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/libsbml-static.a
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/sbml-static-targets.cmake
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/sbml-static-targets-none.cmake
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/sbml-static-config-version.cmake
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/sbml-static-config.cmake
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/libsbmlj.so
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/java/libsbmlj.jar
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/x86_64-linux-gnu/perl5/5.40/LibSBML.pod
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/x86_64-linux-gnu/perl5/5.40/LibSBML.pm
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/x86_64-linux-gnu/perl5/5.40/auto/LibSBML/LibSBML.so
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/TranslateSBML.mex
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/OutputSBML.mex
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test.xml
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/addLevelVersion.m
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/applyUserValidation.m
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/CheckAndConvert.m
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/Contents.m
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/ConvertFormulaToMathML.m
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/getDefaultValues.m
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/getSBMLDefaultStruct.m
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/getStructure.m
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/getStructureEnum.m
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/getStructureFieldnames.m
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/getValueType.m
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/installSBML.m
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/isEnabled.m
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/isFbcEnabled.m
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/isoctave.m
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/isSBML_Model.m
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/OutputSBML.m
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/TranslateSBML.m
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/compareFiles.m
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/runTests.m
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/testBinding.m
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/testCVTerms.m
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/testGetSBMLDefaultStruct.m
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/testIsSBMLModel.m
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/testMissingOutput.m
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/testOutput.m
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/testReadFlags.m
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/testReadFromFile1.m
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/testReadFromFile10.m
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/testReadFromFile11.m
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/testReadFromFile12.m
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/testReadFromFile13.m
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/testReadFromFile14.m
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/testReadFromFile15.m
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/testReadFromFile16.m
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/testReadFromFile2.m
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/testReadFromFile3.m
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/testReadFromFile4.m
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/testReadFromFile5.m
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/testReadFromFile6.m
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/testReadFromFile7.m
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/testReadFromFile8.m
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/testReadFromFile9.m
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/testReadFromFileFbc1.m
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/testReadFromFileFbc2.m
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/testReadFromFileFbc3.m
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/testReadFromFileFbc4.m
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/testReadWriteGeneProductIds.m
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/testReadWriteGeneProducts.m
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/testReadFbcKeyValuePair.m
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/testAddKeyValuePairs.m
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/testVersionInformation.m
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/algebraicRules.xml
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/both.xml
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/convertedFormulas.xml
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/convertedFormulas2.xml
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/convertedFormulasL2.xml
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/createdAnnotation.xml
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/createdAnnotationL2.xml
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/csymbolAvogadro.xml
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/csymbolDelay.xml
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/csymbolTime-reaction-l2.xml
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/csymbolTime.xml
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/errors.xml
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/fatal.xml
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/fbc.xml
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/fbcL3V2V1.xml
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/fbcL3V2V2.xml
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/fbcV2.xml
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/fbcV2Labels.xml
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/fbc_groups.xml
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/fbc_qual.xml
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/fbc_qual_groups.xml
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/fbcV3.xml
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/fbcV3_1.xml
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/fbc_kvp.xml
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/funcDefsWithInitialAssignments.xml
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/functionDefinition.xml
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/groups-example1.xml
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/groups_qual.xml
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/initialAssignments.xml
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/l1v1-branch.xml
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/l1v1-minimal.xml
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/l1v1-rules.xml
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/l1v1-units.xml
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/l1v1.xml
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/l1v2-all.xml
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/l2v1-all.xml
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/l2v1-allelements.xml
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/l2v1-assignment.xml
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/l2v2-all.xml
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/l2v2-newComponents.xml
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/l2v2-newelements.xml
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/l2v3-all.xml
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/l2v3-newelements.xml
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/l2v3-newMath.xml
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/l2v4-all.xml
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/l2v5-all.xml
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/l3v1core.xml
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/l3v2-empty-event.xml
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/l3v2-empty-math.xml
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/l3v2-newmath.xml
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/l3v2-no-model.xml
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/l3v2core.xml
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/math_no_arguments.xml
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/missing_out.xml
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/nestedPiecewise.xml
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/none.xml
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/nonLogicals.xml
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/notes_annotations.xml
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/outGP00.xml
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/outGP01.xml
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/outGP10.xml
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/outGP11.xml
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/piecewise.xml
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/qual.xml
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/rateRules.xml
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/readerror.xml
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/sparseStoichiometry.xml
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/species.xml
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/test-greek.xml
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/warn.xml
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/python3.13/site-packages/libsbml/_libsbml.so
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/python3.13/site-packages/libsbml.pth
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/python3.13/site-packages/libsbml/libsbml.py
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/libsbmldocs
> -- Up-to-date: /<<PKGBUILDDIR>>/debian/tmp/usr/share/libsbmldocs
> -- Up-to-date: /<<PKGBUILDDIR>>/debian/tmp/usr/share/libsbmldocs
> -- Up-to-date: /<<PKGBUILDDIR>>/debian/tmp/usr/share/libsbmldocs
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/libsbml/COPYING.txt
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/libsbml/FUNDING.txt
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/libsbml/LICENSE.txt
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/libsbml/NEWS.txt
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/libsbml/README.md
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/libsbml/VERSION.txt
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/pkgconfig/libsbml.pc
> make[1]: Leaving directory '/<<PKGBUILDDIR>>/build'
>   debian/rules execute_after_dh_auto_install
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> mkdir -p /<<PKGBUILDDIR>>/debian/tmp/usr/share/libsbml/docs/
> sed 's#formatted/##g' docs/index.html.in > /<<PKGBUILDDIR>>/debian/tmp/usr/share/libsbml/docs/index.html
> set -x ; \
> for pyv in python3.13 ; do \
>    if [ -d /<<PKGBUILDDIR>>/debian/tmp/usr/lib/*/${pyv}/site-packages/ ] ; then \
> 	mkdir -p /<<PKGBUILDDIR>>/debian/tmp/usr/lib/${pyv}/dist-packages ; \
> 	mv /<<PKGBUILDDIR>>/debian/tmp/usr/lib/*/${pyv}/site-packages/* /<<PKGBUILDDIR>>/debian/tmp/usr/lib/${pyv}/dist-packages ; \
>    fi ; \
> done
> + [ -d /<<PKGBUILDDIR>>/debian/tmp/usr/lib/*/python3.13/site-packages/ ]
> find /<<PKGBUILDDIR>>/debian/tmp/usr -type f -name "*.js" -delete
> find /<<PKGBUILDDIR>>/debian/tmp/usr -type f -name "*.md5" -delete
> find /<<PKGBUILDDIR>>/debian/tmp/usr -type f -exec chmod 644 {} +
> find /<<PKGBUILDDIR>>/debian/tmp/usr/lib -name "*.mex*" -exec strip --strip-unneeded {} + || true
> find /<<PKGBUILDDIR>>/debian/tmp/usr/lib -name "*.mex*" -exec strip --remove-section=.comment {} + || true
> dpkg-shlibdeps /<<PKGBUILDDIR>>/debian/tmp/usr/lib/*/octave/site/oct/*/*.mex -Tdebian/libsbml5-octave.substvars -l/usr/lib/x86_64-linux-gnu/octave/10.3.0
> dpkg-shlibdeps: error: cannot read /<<PKGBUILDDIR>>/debian/tmp/usr/lib/*/octave/site/oct/*/*.mex: No such file or directory
> make[1]: *** [debian/rules:91: execute_after_dh_auto_install] Error 25
> make[1]: Leaving directory '/<<PKGBUILDDIR>>'
> make: *** [debian/rules:53: binary] Error 2
> dpkg-buildpackage: error: debian/rules binary subprocess failed with exit status 2
> --------------------------------------------------------------------------------

> From: Debian FTP Masters <ftpmaster at ftp-master.debian.org>
> Subject: Bug#1125648: fixed in libsbml 5.20.5+dfsg-2
> Date: Sun, 08 Feb 2026 20:54:25 +0000
> To: 1125648-close at bugs.debian.org
> Reply-To: Rafael Laboissière <rafael at debian.org>
> Message-Id: <E1vpBnV-0000000Aqqy-0zyi at fasolo.debian.org>
>
> Source: libsbml
> Source-Version: 5.20.5+dfsg-2
> Done: Rafael Laboissière <rafael at debian.org>
>
> We believe that the bug you reported is fixed in the latest version of 
> libsbml, which is due to be installed in the Debian FTP archive.
>
> A summary of the changes between this version and the previous one is 
> attached.
>
> Thank you for reporting the bug, which will now be closed.  If you 
> have further comments please address them to 1125648 at bugs.debian.org, 
> and the maintainer will reopen the bug report if appropriate.
>
> Debian distribution maintenance software 
> pp. 
> Rafael Laboissière <rafael at debian.org> (supplier of updated libsbml package)
>
> (This message was generated automatically at their request; if you 
> believe that there is a problem with it please contact the archive 
> administrators by mailing ftpmaster at ftp-master.debian.org)
>
>
> -----BEGIN PGP SIGNED MESSAGE----- 
> Hash: SHA512
>
> Format: 1.8
> Date: Sun, 08 Feb 2026 10:31:51 +0000
> Source: libsbml
> Architecture: source
> Version: 5.20.5+dfsg-2
> Distribution: unstable
> Urgency: medium
> Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
> Changed-By: Rafael Laboissière <rafael at debian.org>
> Closes: 1125648
> Changes: 
> libsbml (5.20.5+dfsg-2) unstable; urgency=medium 
> . 
>   * Team upload. 
>   * d/rules: Fix the value of CMAKE_INSTALL_LIBDIR in the CMake cache 
>     (Closes: #1125648) 
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[Debian-med-packaging] Bug#1125648: marked as done (libsbml: FTBFS: dpkg-shlibdeps: error: cannot read /<<PKGBUILDDIR>>/debian/tmp/usr/lib/*/octave/site/oct/*/*.mex: No such file or directory)

[Debian-med-packaging] Bug#1125648: marked as done (libsbml: FTBFS: dpkg-shlibdeps: error: cannot read /<<PKGBUILDDIR>>/debian/tmp/usr/lib//octave/site/oct//*.mex: No such file or directory)