[Debian-med-packaging] Bug#1128172: rdp-readseq: FTBFS with default Java 25

Vladimir Petko vpa1977 at gmail.com
Mon Feb 16 06:11:53 GMT 2026


Source: rdp-readseq
Version: 2.0.2-9
Severity: normal
Tags: ftbfs
Usertags: default-java25

Dear Maintainers,

The package rdp-readseq ftbfs with default Java 25.
The relevant part of the build log:
---------------

junit:
    [javac] /<<PKGBUILDDIR>>/junit-tmp.xml:7: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds
    [javac] Compiling 15 source files
    [javac] Note: /<<PKGBUILDDIR>>/test/edu/msu/cme/rdp/readseq/utils/gbregion/JoinRegionTest.java uses unchecked or unsafe operations.
    [javac] Note: Recompile with -Xlint:unchecked for details.
    [junit] Running edu.msu.cme.rdp.readseq.IndexedSeqReaderTest
    [junit] Indexed 5 sequences in 0 ms
    [junit] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.089 sec
    [junit] Running edu.msu.cme.rdp.readseq.SequenceParserTest
    [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.092 sec
    [junit] Running edu.msu.cme.rdp.readseq.readers.QSeqReaderTest
    [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.103 sec
    [junit] Running edu.msu.cme.rdp.readseq.readers.SeqFileReaderTest
    [junit] Tests run: 13, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 0.131 sec

BUILD FAILED
/<<PKGBUILDDIR>>/junit-tmp.xml:11: Test edu.msu.cme.rdp.readseq.readers.SeqFileReaderTest failed
---------------


-- System Information:
Debian Release: forky/sid
  APT prefers questing-updates
  APT policy: (500, 'questing-updates'), (500, 'questing-security'), (500, 'questing'), (100, 'questing-backports')
Architecture: amd64 (x86_64)
Foreign Architectures: i386

Kernel: Linux 6.17.0-12-generic (SMP w/32 CPU threads; PREEMPT)
Kernel taint flags: TAINT_PROPRIETARY_MODULE, TAINT_WARN, TAINT_OOT_MODULE
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8), LANGUAGE=en
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled



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