[Debian-med-packaging] Bug#1128281: python-skbio: tests fail with scipy 1.17

Drew Parsons dparsons at debian.org
Tue Feb 17 12:02:23 GMT 2026


Source: python-skbio
Version: 0.6.3-1
Severity: normal

python-skbio is failing tests with scipy 1.17, currently
available in experimental.

794s =========================== short test summary info ============================
794s FAILED diversity/tests/test_driver.py::BetaDiversityTests::test_available_metrics
794s FAILED diversity/tests/test_driver.py::BetaDiversityTests::test_qualitative_bug_issue_1549
794s FAILED stats/distance/tests/test_permdisp.py::testPERMDISP::test_centroids_null
794s FAILED stats/tests/test_composition.py::AncomTests::test_ancom_no_signal - As...
794s ===== 4 failed, 3056 passed, 30 skipped, 76 warnings in 664.43s (0:11:04) ======


The error appears to be use of a deprecated API:

794s E               ValueError: Unknown Distance Metric: sokalmichener


python-skbio 0.7 has been released, does it fix the problem?



More information about the Debian-med-packaging mailing list