[Debian-med-packaging] Bug#1126219: nipy: FTBFS: ModuleNotFoundError: No module named 'nipy'
Santiago Vila
sanvila at debian.org
Fri Jan 23 11:37:48 GMT 2026
Package: src:nipy
Version: 0.6.1-3
Severity: serious
Tags: ftbfs forky sid
Dear maintainer:
During a rebuild of all packages in unstable, this package failed to build.
Below you will find the last part of the build log (probably the most
relevant part, but not necessarily). If required, the full build log
is available here:
https://people.debian.org/~sanvila/build-logs/202601/
About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.
If you cannot reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:nipy, so that this is still
visible in the BTS web page for this package.
Thanks.
--------------------------------------------------------------------------------
[...]
debian/rules clean
dh clean --buildsystem=pybuild --with=sphinxdoc
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
# Do not force maintainers to install Build-Depends on local machine
dh_auto_clean || rm -rf __pycache__ .pybuild
pybuild --clean -i python{version} -p "3.14 3.13"
rm -rf .pybuild/
find . -name \*.pyc -exec rm {} \;
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_autoreconf_clean -O--buildsystem=pybuild
debian/rules override_dh_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
: # I: Custom cleaning
rm -rf build nipy/neurospin/__config__.py
[... snipped ...]
[135/370] /<<PKGBUILDDIR>>/nipy/modalities/fmri/fmristat/api.py
[136/370] /<<PKGBUILDDIR>>/nipy/modalities/fmri/fmristat/hrf.py
[137/370] /<<PKGBUILDDIR>>/nipy/modalities/fmri/fmristat/invert.py
[138/370] /<<PKGBUILDDIR>>/nipy/modalities/fmri/fmristat/model.py
[139/370] /<<PKGBUILDDIR>>/nipy/modalities/fmri/fmristat/outputters.py
[140/370] /<<PKGBUILDDIR>>/nipy/modalities/fmri/fmristat/tests/FIACdesigns.py
[141/370] /<<PKGBUILDDIR>>/nipy/modalities/fmri/fmristat/tests/__init__.py
[142/370] /<<PKGBUILDDIR>>/nipy/modalities/fmri/fmristat/tests/test_FIAC.py
[143/370] /<<PKGBUILDDIR>>/nipy/modalities/fmri/fmristat/tests/test_hrf.py
[144/370] /<<PKGBUILDDIR>>/nipy/modalities/fmri/fmristat/tests/test_iterables.py
[145/370] /<<PKGBUILDDIR>>/nipy/modalities/fmri/fmristat/tests/test_model.py
[146/370] /<<PKGBUILDDIR>>/nipy/modalities/fmri/fmristat/tests/test_outputters.py
[147/370] /<<PKGBUILDDIR>>/nipy/modalities/fmri/spm/__init__.py
[148/370] /<<PKGBUILDDIR>>/nipy/modalities/fmri/spm/correlation.py
[149/370] /<<PKGBUILDDIR>>/nipy/modalities/fmri/spm/model.py
[150/370] /<<PKGBUILDDIR>>/nipy/modalities/fmri/spm/reml.py
[151/370] /<<PKGBUILDDIR>>/nipy/modalities/fmri/spm/trace.py
[152/370] /<<PKGBUILDDIR>>/nipy/modalities/fmri/tests/__init__.py
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[159/370] /<<PKGBUILDDIR>>/nipy/modalities/fmri/tests/spm_bases.mat
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[164/370] /<<PKGBUILDDIR>>/nipy/modalities/fmri/tests/test_dmtx.py
[165/370] /<<PKGBUILDDIR>>/nipy/modalities/fmri/tests/test_fmri.py
[166/370] /<<PKGBUILDDIR>>/nipy/modalities/fmri/tests/test_glm.py
[167/370] /<<PKGBUILDDIR>>/nipy/modalities/fmri/tests/test_hemodynamic_models.py
[168/370] /<<PKGBUILDDIR>>/nipy/modalities/fmri/tests/test_hrf.py
[169/370] /<<PKGBUILDDIR>>/nipy/modalities/fmri/tests/test_iterators.py
[170/370] /<<PKGBUILDDIR>>/nipy/modalities/fmri/tests/test_paradigm.py
[171/370] /<<PKGBUILDDIR>>/nipy/modalities/fmri/tests/test_realfuncs.py
[172/370] /<<PKGBUILDDIR>>/nipy/modalities/fmri/tests/test_utils.py
[173/370] /<<PKGBUILDDIR>>/nipy/testing/__init__.py
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[186/370] /<<PKGBUILDDIR>>/nipy/utils/tests/__init__.py
[187/370] /<<PKGBUILDDIR>>/nipy/utils/tests/test_arrays.py
[188/370] /<<PKGBUILDDIR>>/nipy/utils/tests/test_utilities.py
[189/370] /<<PKGBUILDDIR>>/nipy/algorithms/clustering/__init__.py
[190/370] /<<PKGBUILDDIR>>/nipy/algorithms/clustering/bgmm.py
[191/370] /<<PKGBUILDDIR>>/nipy/algorithms/clustering/ggmixture.py
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[193/370] /<<PKGBUILDDIR>>/nipy/algorithms/clustering/hierarchical_clustering.py
[194/370] /<<PKGBUILDDIR>>/nipy/algorithms/clustering/imm.py
[195/370] /<<PKGBUILDDIR>>/nipy/algorithms/clustering/meson.build
[196/370] /<<PKGBUILDDIR>>/nipy/algorithms/clustering/utils.py
[197/370] /<<PKGBUILDDIR>>/nipy/algorithms/clustering/von_mises_fisher_mixture.py
[198/370] /<<PKGBUILDDIR>>/nipy/algorithms/clustering/tests/__init__.py
[199/370] /<<PKGBUILDDIR>>/nipy/algorithms/clustering/tests/test_bgmm.py
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[202/370] /<<PKGBUILDDIR>>/nipy/algorithms/clustering/tests/test_gmm.py
[203/370] /<<PKGBUILDDIR>>/nipy/algorithms/clustering/tests/test_hierarchical_clustering.py
[204/370] /<<PKGBUILDDIR>>/nipy/algorithms/clustering/tests/test_imm.py
[205/370] /<<PKGBUILDDIR>>/nipy/algorithms/clustering/tests/test_vmm.py
[206/370] /<<PKGBUILDDIR>>/nipy/algorithms/diagnostics/__init__.py
[207/370] /<<PKGBUILDDIR>>/nipy/algorithms/diagnostics/commands.py
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[209/370] /<<PKGBUILDDIR>>/nipy/algorithms/diagnostics/timediff.py
[210/370] /<<PKGBUILDDIR>>/nipy/algorithms/diagnostics/tsdiffplot.py
[211/370] /<<PKGBUILDDIR>>/nipy/algorithms/diagnostics/tests/__init__.py
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[215/370] /<<PKGBUILDDIR>>/nipy/algorithms/diagnostics/tests/data/generate_tsdiff_results.m
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[217/370] /<<PKGBUILDDIR>>/nipy/algorithms/diagnostics/tests/data/tsdiff_results.mat
[218/370] /<<PKGBUILDDIR>>/nipy/algorithms/group/__init__.py
[219/370] /<<PKGBUILDDIR>>/nipy/algorithms/group/parcel_analysis.py
[220/370] /<<PKGBUILDDIR>>/nipy/algorithms/group/tests/__init__.py
[221/370] /<<PKGBUILDDIR>>/nipy/algorithms/group/tests/test_parcel_analysis.py
[222/370] /<<PKGBUILDDIR>>/nipy/algorithms/slicetiming/__init__.py
[223/370] /<<PKGBUILDDIR>>/nipy/algorithms/slicetiming/timefuncs.py
[224/370] /<<PKGBUILDDIR>>/nipy/algorithms/slicetiming/tests/__init__.py
[225/370] /<<PKGBUILDDIR>>/nipy/algorithms/slicetiming/tests/test_timefuncs.py
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[244/370] /<<PKGBUILDDIR>>/nipy/algorithms/registration/tests/__init__.py
[245/370] /<<PKGBUILDDIR>>/nipy/algorithms/registration/tests/test_affine.py
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[256/370] /<<PKGBUILDDIR>>/nipy/algorithms/segmentation/tests/__init__.py
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[306/370] /<<PKGBUILDDIR>>/nipy/labs/datasets/transforms/tests/test_affine_transform.py
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[309/370] /<<PKGBUILDDIR>>/nipy/labs/datasets/volumes/__init__.py
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[319/370] /<<PKGBUILDDIR>>/nipy/labs/spatial_models/__init__.py
[320/370] /<<PKGBUILDDIR>>/nipy/labs/spatial_models/bayesian_structural_analysis.py
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[356/370] /<<PKGBUILDDIR>>/nipy/labs/bindings/tests/__init__.py
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[361/370] /<<PKGBUILDDIR>>/nipy/labs/bindings/tests/test_numpy.py
[362/370] /<<PKGBUILDDIR>>/nipy/labs/glm/tests/__init__.py
[363/370] /<<PKGBUILDDIR>>/nipy/labs/glm/tests/test_glm.py
[364/370] /<<PKGBUILDDIR>>/nipy/labs/group/tests/__init__.py
[365/370] /<<PKGBUILDDIR>>/nipy/labs/group/tests/test_onesample_stat.py
[366/370] /<<PKGBUILDDIR>>/nipy/labs/group/tests/test_permutation_test.py
[367/370] /<<PKGBUILDDIR>>/nipy/labs/utils/tests/__init__.py
[368/370] /<<PKGBUILDDIR>>/nipy/labs/utils/tests/test_misc.py
[369/370] /<<PKGBUILDDIR>>/nipy/labs/utils/tests/test_repro.py
[370/370] /<<PKGBUILDDIR>>/nipy/labs/utils/tests/test_simul_multisubject_fmri_dataset.py
Successfully built nipy-0.6.1-cp313-cp313-linux_x86_64.whl
I: pybuild plugin_pyproject:165: Unpacking wheel built for python3.13 with "installer" module
debian/rules execute_after_dh_auto_build-indep
make[1]: Entering directory '/<<PKGBUILDDIR>>'
# Generate documentation
PYTHONPATH=$(pybuild --print build_dir --interpreter python3.13) \
http_proxy='127.0.0.1:9' \
PATH=/<<PKGBUILDDIR>>/debian/tmp/usr/bin/:$PATH \
HOME=/<<PKGBUILDDIR>>/build \
/usr/bin/make -C doc html PYTHON=python3.13
Traceback (most recent call last):
File "/usr/bin/pybuild", line 580, in <module>
main(cfg)
~~~~^^^^^
File "/usr/bin/pybuild", line 188, in main
versions = [Version(v) for v in m.group("version")]
~~~~~~~^^^
File "/usr/share/dh-python/dhpython/version.py", line 95, in __init__
raise ValueError("major component is required")
ValueError: major component is required
make[2]: Entering directory '/<<PKGBUILDDIR>>/doc'
python3.13 ../tools/build_modref_templates.py
/<<PKGBUILDDIR>>/tools/apigen.py:60: SyntaxWarning: invalid escape sequence '\.'
['\.tests$']
/<<PKGBUILDDIR>>/tools/apigen.py:333: SyntaxWarning: invalid escape sequence '\.'
>>> dw.package_skip_patterns.append('\.util$')
Traceback (most recent call last):
File "/<<PKGBUILDDIR>>/doc/../tools/build_modref_templates.py", line 18, in <module>
docwriter = ApiDocWriter(package)
File "/<<PKGBUILDDIR>>/tools/apigen.py", line 74, in __init__
self.package_name = package_name
^^^^^^^^^^^^^^^^^
File "/<<PKGBUILDDIR>>/tools/apigen.py", line 96, in set_package_name
self.root_module = __import__(package_name)
~~~~~~~~~~^^^^^^^^^^^^^^
ModuleNotFoundError: No module named 'nipy'
make[2]: *** [Makefile:62: api] Error 1
make[2]: Leaving directory '/<<PKGBUILDDIR>>/doc'
make[1]: *** [debian/rules:38: execute_after_dh_auto_build-indep] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:23: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess failed with exit status 2
--------------------------------------------------------------------------------
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