From commodity at finlog.sk  Wed Jul  1 00:12:08 2026
From: commodity at finlog.sk (=?UTF-8?Q?FAU_Logistics_=E2=80=93_Mineral_Trading_?= =?UTF-8?Q?Division?=)
Date: Tue, 30 Jun 2026 23:12:08 +0000
Subject: [Debian-med-packaging] =?utf-8?q?Direct_Mandate_for_Copper_Catho?=
 =?utf-8?q?de=2C_Copper_Concentrate=2C_Gold_=26_Cobalt_Supply_=E2=80=93_AB?=
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From ftpmaster at ftp-master.debian.org  Wed Jul  1 06:15:19 2026
From: ftpmaster at ftp-master.debian.org (Debian FTP Masters)
Date: Wed, 01 Jul 2026 05:15:19 +0000
Subject: [Debian-med-packaging] Processing of
 mcaller_1.0.3+git20210624.b415090-4_source.changes
Message-ID: <E1wenI7-003zMU-31@usper.debian.org>

mcaller_1.0.3+git20210624.b415090-4_source.changes uploaded successfully to localhost
along with the files:
  mcaller_1.0.3+git20210624.b415090-4.dsc
  mcaller_1.0.3+git20210624.b415090-4.debian.tar.xz
  mcaller_1.0.3+git20210624.b415090-4_amd64.buildinfo

Greetings,

	Your Debian queue daemon (running on host usper.debian.org)


From ftpmaster at ftp-master.debian.org  Wed Jul  1 06:19:49 2026
From: ftpmaster at ftp-master.debian.org (Debian FTP Masters)
Date: Wed, 01 Jul 2026 05:19:49 +0000
Subject: [Debian-med-packaging]
 mcaller_1.0.3+git20210624.b415090-4_source.changes ACCEPTED into unstable
Message-ID: <E1wenMT-0000000Bi7A-1fMb@fasolo.debian.org>

Thank you for your contribution to Debian.



Accepted:

-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 1.8
Date: Wed, 01 Jul 2026 06:24:58 +0200
Source: mcaller
Architecture: source
Version: 1.0.3+git20210624.b415090-4
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Changed-By: Andreas Tille <tille at debian.org>
Closes: 1140947
Changes:
 mcaller (1.0.3+git20210624.b415090-4) unstable; urgency=medium
 .
   * Team upload.
   * d/watch: version=5
   * Remove redundant Priority: optional from source stanza.
   * Update standards version to 4.7.4, no changes needed.
   * Fix multiprocessing with Python3.14
     Closes: #1140947
   * Reflow Uploaders field (cme)
   * Build-Depends: s/dh-python/dh-sequence-python3/ (routine-update)
   * Drop 'Rules-Requires-Root: no' from d/control (routine-update)
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From owner at bugs.debian.org  Wed Jul  1 06:21:01 2026
From: owner at bugs.debian.org (Debian Bug Tracking System)
Date: Wed, 01 Jul 2026 05:21:01 +0000
Subject: [Debian-med-packaging] Bug#1140947: marked as done (mcaller: FTBFS:
 Can't pickle local object)
References: <E1wenMT-0000000Bi7J-1zwW@fasolo.debian.org>
 <178266242777.3346966.6317328449751484158.reportbug@belkar.wrar.name>
Message-ID: <handler.1140947.D1140947.17828831912004211.ackdone@bugs.debian.org>

Your message dated Wed, 01 Jul 2026 05:19:49 +0000
with message-id <E1wenMT-0000000Bi7J-1zwW at fasolo.debian.org>
and subject line Bug#1140947: fixed in mcaller 1.0.3+git20210624.b415090-4
has caused the Debian Bug report #1140947,
regarding mcaller: FTBFS: Can't pickle local object
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact owner at bugs.debian.org
immediately.)


-- 
1140947: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1140947
Debian Bug Tracking System
Contact owner at bugs.debian.org with problems
-------------- next part --------------
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From: Andrey Rakhmatullin <wrar at debian.org>
Subject: mcaller: FTBFS: Can't pickle local object
Date: Sun, 28 Jun 2026 21:00:27 +0500
Size: 5583
URL: <http://alioth-lists.debian.net/pipermail/debian-med-packaging/attachments/20260701/10c6e20f/attachment.eml>
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From: Debian FTP Masters <ftpmaster at ftp-master.debian.org>
Subject: Bug#1140947: fixed in mcaller 1.0.3+git20210624.b415090-4
Date: Wed, 01 Jul 2026 05:19:49 +0000
Size: 7182
URL: <http://alioth-lists.debian.net/pipermail/debian-med-packaging/attachments/20260701/10c6e20f/attachment-0001.eml>

From ftpmaster at ftp-master.debian.org  Wed Jul  1 08:12:54 2026
From: ftpmaster at ftp-master.debian.org (Debian FTP Masters)
Date: Wed, 01 Jul 2026 07:12:54 +0000
Subject: [Debian-med-packaging] Processing of
 scikit-bio-binaries_1.0.3-2_source.changes
Message-ID: <E1wep7u-00442b-0s@usper.debian.org>

scikit-bio-binaries_1.0.3-2_source.changes uploaded successfully to localhost
along with the files:
  scikit-bio-binaries_1.0.3-2.dsc
  scikit-bio-binaries_1.0.3-2.debian.tar.xz
  scikit-bio-binaries_1.0.3-2_amd64.buildinfo

Greetings,

	Your Debian queue daemon (running on host usper.debian.org)


From ftpmaster at ftp-master.debian.org  Wed Jul  1 08:18:38 2026
From: ftpmaster at ftp-master.debian.org (Debian FTP Masters)
Date: Wed, 01 Jul 2026 07:18:38 +0000
Subject: [Debian-med-packaging] scikit-bio-binaries_1.0.3-2_source.changes
 ACCEPTED into unstable
Message-ID: <E1wepDS-0000000C1Gm-2JpO@fasolo.debian.org>

Thank you for your contribution to Debian.



Accepted:

-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 1.8
Date: Wed, 01 Jul 2026 09:02:29 +0200
Source: scikit-bio-binaries
Architecture: source
Version: 1.0.3-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Changed-By: Andreas Tille <tille at debian.org>
Changes:
 scikit-bio-binaries (1.0.3-2) unstable; urgency=medium
 .
   * Build reproducibly
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From andreas at an3as.eu  Wed Jul  1 09:03:57 2026
From: andreas at an3as.eu (Andreas Tille)
Date: Wed, 1 Jul 2026 10:03:57 +0200
Subject: [Debian-med-packaging] Bug#1139615: unifrac-tools: FTBFS against
 HDF5 2.1.0
References: <178108370351.25536.1213529281115429015.reportbug@pinibrem14>
Message-ID: <akTJ7aNlpycGv_Oz@an3as.eu>

Control: tags -1 help
Control: tags -1 - pending
Thanks

Hi Gilles and Aaron,

Salsa kindly has tagged that patch pending when I applied the patch from
Gilles.  When I decided to build the latest upstream version of
unifrac-tools I first had to package a new dependency which is now
available.  I had to adapt the patch for src/Makefile in several ways
and it seems I managed to mess it up again as you can see in Salsa CI

   https://salsa.debian.org/med-team/unifrac-tools/-/jobs/9880561

Any help would be welcome - direct pushing to the Git repository (any
DD has push permissions) or MRs welcome.

Thanks a lot for your help
   Andreas.

-- 
https://fam-tille.de


From owner at bugs.debian.org  Wed Jul  1 09:05:03 2026
From: owner at bugs.debian.org (Debian Bug Tracking System)
Date: Wed, 01 Jul 2026 08:05:03 +0000
Subject: [Debian-med-packaging] Processed: Re: unifrac-tools: FTBFS against
 HDF5 2.1.0
References: <akTJ7aNlpycGv_Oz@an3as.eu>
 <178108370351.25536.1213529281115429015.reportbug@pinibrem14>
Message-ID: <handler.s.B1139615.17828930412117605.transcript@bugs.debian.org>

Processing control commands:

> tags -1 help
Bug #1139615 [src:unifrac-tools] unifrac-tools: FTBFS against HDF5 2.1.0
Added tag(s) help.
> tags -1 - pending
Bug #1139615 [src:unifrac-tools] unifrac-tools: FTBFS against HDF5 2.1.0
Removed tag(s) pending.

-- 
1139615: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139615
Debian Bug Tracking System
Contact owner at bugs.debian.org with problems


From ftpmaster at ftp-master.debian.org  Wed Jul  1 09:48:19 2026
From: ftpmaster at ftp-master.debian.org (Debian FTP Masters)
Date: Wed, 01 Jul 2026 08:48:19 +0000
Subject: [Debian-med-packaging] Processing of
 parallel_20240222+ds-4_source.changes
Message-ID: <E1weqcF-0047p5-2b@usper.debian.org>

parallel_20240222+ds-4_source.changes uploaded successfully to localhost
along with the files:
  parallel_20240222+ds-4.dsc
  parallel_20240222+ds-4.debian.tar.xz
  parallel_20240222+ds-4.git.tar.xz
  parallel_20240222+ds-4_source.buildinfo

Greetings,

	Your Debian queue daemon (running on host usper.debian.org)


From ftpmaster at ftp-master.debian.org  Wed Jul  1 09:53:01 2026
From: ftpmaster at ftp-master.debian.org (Debian FTP Masters)
Date: Wed, 01 Jul 2026 08:53:01 +0000
Subject: [Debian-med-packaging] parallel_20240222+ds-4_source.changes
 ACCEPTED into unstable
Message-ID: <E1weqgn-0000000CWKr-28Jm@fasolo.debian.org>

Thank you for your contribution to Debian.



Accepted:

-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 1.8
Date: Wed, 01 Jul 2026 10:15:32 +0200
Source: parallel
Architecture: source
Version: 20240222+ds-4
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Changed-By: Gioele Barabucci <gioele at debian.org>
Closes: 1141151 1141153
Changes:
 parallel (20240222+ds-4) unstable; urgency=medium
 .
   * Team upload.
   * d/rules: Remove code needed for debhelper compat level <= 12
   * d/control: Build-Depend on libreoffice-core-nogui instead of full version
     (Closes: #1141151)
   * Add support for <nodoc> build profile (Closes: #1141153)
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Git-Tag-Info: tag=114e951237bbd31b515bcc16bb4553eaf49240e8 fp=02988a8f528fa493e1b98e388f89871cdb75972e
Git-Tag-Tagger: Gioele Barabucci <gioele at svario.it>

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From owner at bugs.debian.org  Wed Jul  1 09:55:02 2026
From: owner at bugs.debian.org (Debian Bug Tracking System)
Date: Wed, 01 Jul 2026 08:55:02 +0000
Subject: [Debian-med-packaging] Bug#1141151: marked as done (parallel: Build
 process brings in unrelated dependencies like GStreamer and Avahi)
References: <E1weqgn-0000000CWL1-2T5k@fasolo.debian.org>
 <d3b7513f-9aa1-4603-8560-67a5e4e643f3@debian.org>
Message-ID: <handler.1141151.D1141151.17828959822157947.ackdone@bugs.debian.org>

Your message dated Wed, 01 Jul 2026 08:53:01 +0000
with message-id <E1weqgn-0000000CWL1-2T5k at fasolo.debian.org>
and subject line Bug#1141151: fixed in parallel 20240222+ds-4
has caused the Debian Bug report #1141151,
regarding parallel: Build process brings in unrelated dependencies like GStreamer and Avahi
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact owner at bugs.debian.org
immediately.)


-- 
1141151: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1141151
Debian Bug Tracking System
Contact owner at bugs.debian.org with problems
-------------- next part --------------
An embedded message was scrubbed...
From: Gioele Barabucci <gioele at debian.org>
Subject: parallel: Build process brings in unrelated dependencies like GStreamer and Avahi
Date: Tue, 30 Jun 2026 14:47:31 +0200
Size: 3082
URL: <http://alioth-lists.debian.net/pipermail/debian-med-packaging/attachments/20260701/8102100e/attachment-0002.eml>
-------------- next part --------------
An embedded message was scrubbed...
From: Debian FTP Masters <ftpmaster at ftp-master.debian.org>
Subject: Bug#1141151: fixed in parallel 20240222+ds-4
Date: Wed, 01 Jul 2026 08:53:01 +0000
Size: 7285
URL: <http://alioth-lists.debian.net/pipermail/debian-med-packaging/attachments/20260701/8102100e/attachment-0003.eml>

From owner at bugs.debian.org  Wed Jul  1 09:55:03 2026
From: owner at bugs.debian.org (Debian Bug Tracking System)
Date: Wed, 01 Jul 2026 08:55:03 +0000
Subject: [Debian-med-packaging] Bug#1141153: marked as done (parallel:
 Support for <nodoc> build profile)
References: <E1weqgn-0000000CWL5-2cGR@fasolo.debian.org>
 <53f54991-5e8d-4697-9228-1a9efedda798@debian.org>
Message-ID: <handler.1141153.D1141153.17828959832157974.ackdone@bugs.debian.org>

Your message dated Wed, 01 Jul 2026 08:53:01 +0000
with message-id <E1weqgn-0000000CWL5-2cGR at fasolo.debian.org>
and subject line Bug#1141153: fixed in parallel 20240222+ds-4
has caused the Debian Bug report #1141153,
regarding parallel: Support for <nodoc> build profile
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact owner at bugs.debian.org
immediately.)


-- 
1141153: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1141153
Debian Bug Tracking System
Contact owner at bugs.debian.org with problems
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Subject: Bug#1141153: fixed in parallel 20240222+ds-4
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From ftpmaster at ftp-master.debian.org  Wed Jul  1 11:44:07 2026
From: ftpmaster at ftp-master.debian.org (Debian FTP Masters)
Date: Wed, 01 Jul 2026 10:44:07 +0000
Subject: [Debian-med-packaging] Processing of
 python-biopython_1.87+dfsg-3_source.changes
Message-ID: <E1wesQJ-004CaS-2X@usper.debian.org>

python-biopython_1.87+dfsg-3_source.changes uploaded successfully to localhost
along with the files:
  python-biopython_1.87+dfsg-3.dsc
  python-biopython_1.87+dfsg-3.debian.tar.xz
  python-biopython_1.87+dfsg-3_amd64.buildinfo

Greetings,

	Your Debian queue daemon (running on host usper.debian.org)


From ftpmaster at ftp-master.debian.org  Wed Jul  1 11:49:18 2026
From: ftpmaster at ftp-master.debian.org (Debian FTP Masters)
Date: Wed, 01 Jul 2026 10:49:18 +0000
Subject: [Debian-med-packaging] python-biopython_1.87+dfsg-3_source.changes
 ACCEPTED into unstable
Message-ID: <E1wesVK-0000000CpEE-20gf@fasolo.debian.org>

Thank you for your contribution to Debian.



Accepted:

-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 1.8
Date: Wed, 01 Jul 2026 08:00:11 +0200
Source: python-biopython
Architecture: source
Version: 1.87+dfsg-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Changed-By: Karsten Sch?ke <karsten.schoeke at geobasis-bb.de>
Changes:
 python-biopython (1.87+dfsg-3) unstable; urgency=medium
 .
   * Team upload.
   * extending Fix-Endian-issue-with-binary-CIF.patch
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From sanvila at debian.org  Wed Jul  1 12:32:32 2026
From: sanvila at debian.org (Santiago Vila)
Date: Wed, 01 Jul 2026 11:32:32 +0000
Subject: [Debian-med-packaging] Bug#1141210: python-mne: FTBFS: E
 pytest.PytestRemovedIn10Warning: Passing a non-Collection iterable to
 parametrize is deprecated.
Message-ID: <E1wetBA-00DaBT-1y@paradis.debian.org>

Package: src:python-mne
Version: 1.12.1-1
Severity: serious
Tags: ftbfs forky sid

Dear maintainer:

During a rebuild of all packages in unstable, this package failed to build.

Below you will find the last part of the build log (probably the most
relevant part, but not necessarily). If required, the full build log
is available here:

https://people.debian.org/~sanvila/build-logs/202607/

About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.

If you cannot reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.

If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:python-mne, so that this is still
visible in the BTS web page for this package.

Thanks.

--------------------------------------------------------------------------------
[...]
[1m[31m/usr/lib/python3/dist-packages/_pytest/python.py[0m:124: in pytest_generate_tests
    [0mmetafunc.parametrize(*marker.args, **marker.kwargs, _param_mark=marker)[90m[39;49;00m
[1m[31m/usr/lib/python3/dist-packages/_pytest/python.py[0m:1316: in parametrize
    [0margnames, parametersets = ParameterSet._for_parametrize([90m[39;49;00m
[1m[31m/usr/lib/python3/dist-packages/_pytest/mark/structures.py[0m:202: in _for_parametrize
    [0mwarnings.warn([90m[39;49;00m
[1m[31mE   pytest.PytestRemovedIn10Warning: Passing a non-Collection iterable to parametrize is deprecated.[0m
[1m[31mE   Test: mne/decoding/tests/test_base.py::test_sklearn_compliance, argvalues type: generator[0m
[1m[31mE   Please convert to a list or tuple.[0m
[1m[31mE   See https://docs.pytest.org/en/stable/deprecations.html#parametrize-iterators[0m
[31m[1m_______________ ERROR collecting mne/decoding/tests/test_csp.py ________________[0m
[1m[31m/usr/lib/python3/dist-packages/pluggy/_hooks.py[0m:512: in __call__
    [0m[94mreturn[39;49;00m [96mself[39;49;00m._hookexec([96mself[39;49;00m.name, [96mself[39;49;00m._hookimpls.copy(), kwargs, firstresult)[90m[39;49;00m
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^[90m[39;49;00m
[1m[31m/usr/lib/python3/dist-packages/pluggy/_manager.py[0m:120: in _hookexec
    [0m[94mreturn[39;49;00m [96mself[39;49;00m._inner_hookexec(hook_name, methods, kwargs, firstresult)[90m[39;49;00m
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^[90m[39;49;00m
[1m[31m/usr/lib/python3/dist-packages/_pytest/python.py[0m:250: in pytest_pycollect_makeitem
    [0m[94mreturn[39;49;00m [96mlist[39;49;00m(collector._genfunctions(name, obj))[90m[39;49;00m
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^[90m[39;49;00m
[1m[31m/usr/lib/python3/dist-packages/_pytest/python.py[0m:476: in _genfunctions
    [0m[96mself[39;49;00m.ihook.pytest_generate_tests.call_extra(methods, [96mdict[39;49;00m(metafunc=metafunc))[90m[39;49;00m
[1m[31m/usr/lib/python3/dist-packages/pluggy/_hooks.py[0m:573: in call_extra
    [0m[94mreturn[39;49;00m [96mself[39;49;00m._hookexec([96mself[39;49;00m.name, hookimpls, kwargs, firstresult)[90m[39;49;00m
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^[90m[39;49;00m
[1m[31m/usr/lib/python3/dist-packages/pluggy/_manager.py[0m:120: in _hookexec
    [0m[94mreturn[39;49;00m [96mself[39;49;00m._inner_hookexec(hook_name, methods, kwargs, firstresult)[90m[39;49;00m
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^[90m[39;49;00m
[1m[31m/usr/lib/python3/dist-packages/_pytest/python.py[0m:124: in pytest_generate_tests
    [0mmetafunc.parametrize(*marker.args, **marker.kwargs, _param_mark=marker)[90m[39;49;00m
[1m[31m/usr/lib/python3/dist-packages/_pytest/python.py[0m:1316: in parametrize
    [0margnames, parametersets = ParameterSet._for_parametrize([90m[39;49;00m
[1m[31m/usr/lib/python3/dist-packages/_pytest/mark/structures.py[0m:202: in _for_parametrize
    [0mwarnings.warn([90m[39;49;00m
[1m[31mE   pytest.PytestRemovedIn10Warning: Passing a non-Collection iterable to parametrize is deprecated.[0m
[1m[31mE   Test: mne/decoding/tests/test_csp.py::test_sklearn_compliance, argvalues type: generator[0m
[1m[31mE   Please convert to a list or tuple.[0m
[1m[31mE   See https://docs.pytest.org/en/stable/deprecations.html#parametrize-iterators[0m
[31m[1m_______________ ERROR collecting mne/decoding/tests/test_ems.py ________________[0m
[1m[31m/usr/lib/python3/dist-packages/pluggy/_hooks.py[0m:512: in __call__
    [0m[94mreturn[39;49;00m [96mself[39;49;00m._hookexec([96mself[39;49;00m.name, [96mself[39;49;00m._hookimpls.copy(), kwargs, firstresult)[90m[39;49;00m
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^[90m[39;49;00m
[1m[31m/usr/lib/python3/dist-packages/pluggy/_manager.py[0m:120: in _hookexec
    [0m[94mreturn[39;49;00m [96mself[39;49;00m._inner_hookexec(hook_name, methods, kwargs, firstresult)[90m[39;49;00m
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^[90m[39;49;00m
[1m[31m/usr/lib/python3/dist-packages/_pytest/python.py[0m:250: in pytest_pycollect_makeitem
    [0m[94mreturn[39;49;00m [96mlist[39;49;00m(collector._genfunctions(name, obj))[90m[39;49;00m
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^[90m[39;49;00m
[1m[31m/usr/lib/python3/dist-packages/_pytest/python.py[0m:476: in _genfunctions
    [0m[96mself[39;49;00m.ihook.pytest_generate_tests.call_extra(methods, [96mdict[39;49;00m(metafunc=metafunc))[90m[39;49;00m
[1m[31m/usr/lib/python3/dist-packages/pluggy/_hooks.py[0m:573: in call_extra
    [0m[94mreturn[39;49;00m [96mself[39;49;00m._hookexec([96mself[39;49;00m.name, hookimpls, kwargs, firstresult)[90m[39;49;00m
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^[90m[39;49;00m
[1m[31m/usr/lib/python3/dist-packages/pluggy/_manager.py[0m:120: in _hookexec
    [0m[94mreturn[39;49;00m [96mself[39;49;00m._inner_hookexec(hook_name, methods, kwargs, firstresult)[90m[39;49;00m
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^[90m[39;49;00m
[1m[31m/usr/lib/python3/dist-packages/_pytest/python.py[0m:124: in pytest_generate_tests
    [0mmetafunc.parametrize(*marker.args, **marker.kwargs, _param_mark=marker)[90m[39;49;00m
[1m[31m/usr/lib/python3/dist-packages/_pytest/python.py[0m:1316: in parametrize
    [0margnames, parametersets = ParameterSet._for_parametrize([90m[39;49;00m
[1m[31m/usr/lib/python3/dist-packages/_pytest/mark/structures.py[0m:202: in _for_parametrize
    [0mwarnings.warn([90m[39;49;00m
[1m[31mE   pytest.PytestRemovedIn10Warning: Passing a non-Collection iterable to parametrize is deprecated.[0m
[1m[31mE   Test: mne/decoding/tests/test_ems.py::test_sklearn_compliance, argvalues type: generator[0m
[1m[31mE   Please convert to a list or tuple.[0m
[1m[31mE   See https://docs.pytest.org/en/stable/deprecations.html#parametrize-iterators[0m
[31m[1m_______________ ERROR collecting mne/decoding/tests/test_ged.py ________________[0m
[1m[31m/usr/lib/python3/dist-packages/pluggy/_hooks.py[0m:512: in __call__
    [0m[94mreturn[39;49;00m [96mself[39;49;00m._hookexec([96mself[39;49;00m.name, [96mself[39;49;00m._hookimpls.copy(), kwargs, firstresult)[90m[39;49;00m
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^[90m[39;49;00m
[1m[31m/usr/lib/python3/dist-packages/pluggy/_manager.py[0m:120: in _hookexec
    [0m[94mreturn[39;49;00m [96mself[39;49;00m._inner_hookexec(hook_name, methods, kwargs, firstresult)[90m[39;49;00m
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^[90m[39;49;00m
[1m[31m/usr/lib/python3/dist-packages/_pytest/python.py[0m:250: in pytest_pycollect_makeitem
    [0m[94mreturn[39;49;00m [96mlist[39;49;00m(collector._genfunctions(name, obj))[90m[39;49;00m
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^[90m[39;49;00m
[1m[31m/usr/lib/python3/dist-packages/_pytest/python.py[0m:476: in _genfunctions
    [0m[96mself[39;49;00m.ihook.pytest_generate_tests.call_extra(methods, [96mdict[39;49;00m(metafunc=metafunc))[90m[39;49;00m
[1m[31m/usr/lib/python3/dist-packages/pluggy/_hooks.py[0m:573: in call_extra
    [0m[94mreturn[39;49;00m [96mself[39;49;00m._hookexec([96mself[39;49;00m.name, hookimpls, kwargs, firstresult)[90m[39;49;00m
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^[90m[39;49;00m
[1m[31m/usr/lib/python3/dist-packages/pluggy/_manager.py[0m:120: in _hookexec
    [0m[94mreturn[39;49;00m [96mself[39;49;00m._inner_hookexec(hook_name, methods, kwargs, firstresult)[90m[39;49;00m
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^[90m[39;49;00m
[1m[31m/usr/lib/python3/dist-packages/_pytest/python.py[0m:124: in pytest_generate_tests
    [0mmetafunc.parametrize(*marker.args, **marker.kwargs, _param_mark=marker)[90m[39;49;00m
[1m[31m/usr/lib/python3/dist-packages/_pytest/python.py[0m:1316: in parametrize
    [0margnames, parametersets = ParameterSet._for_parametrize([90m[39;49;00m
[1m[31m/usr/lib/python3/dist-packages/_pytest/mark/structures.py[0m:202: in _for_parametrize
    [0mwarnings.warn([90m[39;49;00m
[1m[31mE   pytest.PytestRemovedIn10Warning: Passing a non-Collection iterable to parametrize is deprecated.[0m
[1m[31mE   Test: mne/decoding/tests/test_ged.py::test_sklearn_compliance, argvalues type: generator[0m
[1m[31mE   Please convert to a list or tuple.[0m
[1m[31mE   See https://docs.pytest.org/en/stable/deprecations.html#parametrize-iterators[0m
[31m[1m_________ ERROR collecting mne/decoding/tests/test_receptive_field.py __________[0m
[1m[31m/usr/lib/python3/dist-packages/pluggy/_hooks.py[0m:512: in __call__
    [0m[94mreturn[39;49;00m [96mself[39;49;00m._hookexec([96mself[39;49;00m.name, [96mself[39;49;00m._hookimpls.copy(), kwargs, firstresult)[90m[39;49;00m
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^[90m[39;49;00m
[1m[31m/usr/lib/python3/dist-packages/pluggy/_manager.py[0m:120: in _hookexec
    [0m[94mreturn[39;49;00m [96mself[39;49;00m._inner_hookexec(hook_name, methods, kwargs, firstresult)[90m[39;49;00m
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^[90m[39;49;00m
[1m[31m/usr/lib/python3/dist-packages/_pytest/python.py[0m:250: in pytest_pycollect_makeitem
    [0m[94mreturn[39;49;00m [96mlist[39;49;00m(collector._genfunctions(name, obj))[90m[39;49;00m
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^[90m[39;49;00m
[1m[31m/usr/lib/python3/dist-packages/_pytest/python.py[0m:476: in _genfunctions
    [0m[96mself[39;49;00m.ihook.pytest_generate_tests.call_extra(methods, [96mdict[39;49;00m(metafunc=metafunc))[90m[39;49;00m
[1m[31m/usr/lib/python3/dist-packages/pluggy/_hooks.py[0m:573: in call_extra
    [0m[94mreturn[39;49;00m [96mself[39;49;00m._hookexec([96mself[39;49;00m.name, hookimpls, kwargs, firstresult)[90m[39;49;00m
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^[90m[39;49;00m
[1m[31m/usr/lib/python3/dist-packages/pluggy/_manager.py[0m:120: in _hookexec
    [0m[94mreturn[39;49;00m [96mself[39;49;00m._inner_hookexec(hook_name, methods, kwargs, firstresult)[90m[39;49;00m
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^[90m[39;49;00m
[1m[31m/usr/lib/python3/dist-packages/_pytest/python.py[0m:124: in pytest_generate_tests
    [0mmetafunc.parametrize(*marker.args, **marker.kwargs, _param_mark=marker)[90m[39;49;00m
[1m[31m/usr/lib/python3/dist-packages/_pytest/python.py[0m:1316: in parametrize
    [0margnames, parametersets = ParameterSet._for_parametrize([90m[39;49;00m
[1m[31m/usr/lib/python3/dist-packages/_pytest/mark/structures.py[0m:202: in _for_parametrize
    [0mwarnings.warn([90m[39;49;00m
[1m[31mE   pytest.PytestRemovedIn10Warning: Passing a non-Collection iterable to parametrize is deprecated.[0m
[1m[31mE   Test: mne/decoding/tests/test_receptive_field.py::test_tdr_sklearn_compliance, argvalues type: generator[0m
[1m[31mE   Please convert to a list or tuple.[0m
[1m[31mE   See https://docs.pytest.org/en/stable/deprecations.html#parametrize-iterators[0m
[31m[1m___________ ERROR collecting mne/decoding/tests/test_search_light.py ___________[0m
[1m[31m/usr/lib/python3/dist-packages/pluggy/_hooks.py[0m:512: in __call__
    [0m[94mreturn[39;49;00m [96mself[39;49;00m._hookexec([96mself[39;49;00m.name, [96mself[39;49;00m._hookimpls.copy(), kwargs, firstresult)[90m[39;49;00m
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^[90m[39;49;00m
[1m[31m/usr/lib/python3/dist-packages/pluggy/_manager.py[0m:120: in _hookexec
    [0m[94mreturn[39;49;00m [96mself[39;49;00m._inner_hookexec(hook_name, methods, kwargs, firstresult)[90m[39;49;00m
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^[90m[39;49;00m
[1m[31m/usr/lib/python3/dist-packages/_pytest/python.py[0m:250: in pytest_pycollect_makeitem
    [0m[94mreturn[39;49;00m [96mlist[39;49;00m(collector._genfunctions(name, obj))[90m[39;49;00m
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^[90m[39;49;00m
[1m[31m/usr/lib/python3/dist-packages/_pytest/python.py[0m:476: in _genfunctions
    [0m[96mself[39;49;00m.ihook.pytest_generate_tests.call_extra(methods, [96mdict[39;49;00m(metafunc=metafunc))[90m[39;49;00m
[1m[31m/usr/lib/python3/dist-packages/pluggy/_hooks.py[0m:573: in call_extra
    [0m[94mreturn[39;49;00m [96mself[39;49;00m._hookexec([96mself[39;49;00m.name, hookimpls, kwargs, firstresult)[90m[39;49;00m
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^[90m[39;49;00m
[1m[31m/usr/lib/python3/dist-packages/pluggy/_manager.py[0m:120: in _hookexec
    [0m[94mreturn[39;49;00m [96mself[39;49;00m._inner_hookexec(hook_name, methods, kwargs, firstresult)[90m[39;49;00m
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^[90m[39;49;00m
[1m[31m/usr/lib/python3/dist-packages/_pytest/python.py[0m:124: in pytest_generate_tests
    [0mmetafunc.parametrize(*marker.args, **marker.kwargs, _param_mark=marker)[90m[39;49;00m
[1m[31m/usr/lib/python3/dist-packages/_pytest/python.py[0m:1316: in parametrize
    [0margnames, parametersets = ParameterSet._for_parametrize([90m[39;49;00m
[1m[31m/usr/lib/python3/dist-packages/_pytest/mark/structures.py[0m:202: in _for_parametrize
    [0mwarnings.warn([90m[39;49;00m
[1m[31mE   pytest.PytestRemovedIn10Warning: Passing a non-Collection iterable to parametrize is deprecated.[0m
[1m[31mE   Test: mne/decoding/tests/test_search_light.py::test_sklearn_compliance, argvalues type: generator[0m
[1m[31mE   Please convert to a list or tuple.[0m
[1m[31mE   See https://docs.pytest.org/en/stable/deprecations.html#parametrize-iterators[0m
[31m[1m_______________ ERROR collecting mne/decoding/tests/test_ssd.py ________________[0m
[1m[31m/usr/lib/python3/dist-packages/pluggy/_hooks.py[0m:512: in __call__
    [0m[94mreturn[39;49;00m [96mself[39;49;00m._hookexec([96mself[39;49;00m.name, [96mself[39;49;00m._hookimpls.copy(), kwargs, firstresult)[90m[39;49;00m
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^[90m[39;49;00m
[1m[31m/usr/lib/python3/dist-packages/pluggy/_manager.py[0m:120: in _hookexec
    [0m[94mreturn[39;49;00m [96mself[39;49;00m._inner_hookexec(hook_name, methods, kwargs, firstresult)[90m[39;49;00m
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^[90m[39;49;00m
[1m[31m/usr/lib/python3/dist-packages/_pytest/python.py[0m:250: in pytest_pycollect_makeitem
    [0m[94mreturn[39;49;00m [96mlist[39;49;00m(collector._genfunctions(name, obj))[90m[39;49;00m
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^[90m[39;49;00m
[1m[31m/usr/lib/python3/dist-packages/_pytest/python.py[0m:476: in _genfunctions
    [0m[96mself[39;49;00m.ihook.pytest_generate_tests.call_extra(methods, [96mdict[39;49;00m(metafunc=metafunc))[90m[39;49;00m
[1m[31m/usr/lib/python3/dist-packages/pluggy/_hooks.py[0m:573: in call_extra
    [0m[94mreturn[39;49;00m [96mself[39;49;00m._hookexec([96mself[39;49;00m.name, hookimpls, kwargs, firstresult)[90m[39;49;00m
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^[90m[39;49;00m
[1m[31m/usr/lib/python3/dist-packages/pluggy/_manager.py[0m:120: in _hookexec
    [0m[94mreturn[39;49;00m [96mself[39;49;00m._inner_hookexec(hook_name, methods, kwargs, firstresult)[90m[39;49;00m
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^[90m[39;49;00m
[1m[31m/usr/lib/python3/dist-packages/_pytest/python.py[0m:124: in pytest_generate_tests
    [0mmetafunc.parametrize(*marker.args, **marker.kwargs, _param_mark=marker)[90m[39;49;00m
[1m[31m/usr/lib/python3/dist-packages/_pytest/python.py[0m:1316: in parametrize
    [0margnames, parametersets = ParameterSet._for_parametrize([90m[39;49;00m
[1m[31m/usr/lib/python3/dist-packages/_pytest/mark/structures.py[0m:202: in _for_parametrize
    [0mwarnings.warn([90m[39;49;00m
[1m[31mE   pytest.PytestRemovedIn10Warning: Passing a non-Collection iterable to parametrize is deprecated.[0m
[1m[31mE   Test: mne/decoding/tests/test_ssd.py::test_sklearn_compliance, argvalues type: generator[0m
[1m[31mE   Please convert to a list or tuple.[0m
[1m[31mE   See https://docs.pytest.org/en/stable/deprecations.html#parametrize-iterators[0m
[31m[1m__________ ERROR collecting mne/decoding/tests/test_time_frequency.py __________[0m
[1m[31m/usr/lib/python3/dist-packages/pluggy/_hooks.py[0m:512: in __call__
    [0m[94mreturn[39;49;00m [96mself[39;49;00m._hookexec([96mself[39;49;00m.name, [96mself[39;49;00m._hookimpls.copy(), kwargs, firstresult)[90m[39;49;00m
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^[90m[39;49;00m
[1m[31m/usr/lib/python3/dist-packages/pluggy/_manager.py[0m:120: in _hookexec
    [0m[94mreturn[39;49;00m [96mself[39;49;00m._inner_hookexec(hook_name, methods, kwargs, firstresult)[90m[39;49;00m
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^[90m[39;49;00m
[1m[31m/usr/lib/python3/dist-packages/_pytest/python.py[0m:250: in pytest_pycollect_makeitem
    [0m[94mreturn[39;49;00m [96mlist[39;49;00m(collector._genfunctions(name, obj))[90m[39;49;00m
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^[90m[39;49;00m
[1m[31m/usr/lib/python3/dist-packages/_pytest/python.py[0m:476: in _genfunctions
    [0m[96mself[39;49;00m.ihook.pytest_generate_tests.call_extra(methods, [96mdict[39;49;00m(metafunc=metafunc))[90m[39;49;00m
[1m[31m/usr/lib/python3/dist-packages/pluggy/_hooks.py[0m:573: in call_extra
    [0m[94mreturn[39;49;00m [96mself[39;49;00m._hookexec([96mself[39;49;00m.name, hookimpls, kwargs, firstresult)[90m[39;49;00m
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^[90m[39;49;00m
[1m[31m/usr/lib/python3/dist-packages/pluggy/_manager.py[0m:120: in _hookexec
    [0m[94mreturn[39;49;00m [96mself[39;49;00m._inner_hookexec(hook_name, methods, kwargs, firstresult)[90m[39;49;00m
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^[90m[39;49;00m
[1m[31m/usr/lib/python3/dist-packages/_pytest/python.py[0m:124: in pytest_generate_tests
    [0mmetafunc.parametrize(*marker.args, **marker.kwargs, _param_mark=marker)[90m[39;49;00m
[1m[31m/usr/lib/python3/dist-packages/_pytest/python.py[0m:1316: in parametrize
    [0margnames, parametersets = ParameterSet._for_parametrize([90m[39;49;00m
[1m[31m/usr/lib/python3/dist-packages/_pytest/mark/structures.py[0m:202: in _for_parametrize
    [0mwarnings.warn([90m[39;49;00m
[1m[31mE   pytest.PytestRemovedIn10Warning: Passing a non-Collection iterable to parametrize is deprecated.[0m
[1m[31mE   Test: mne/decoding/tests/test_time_frequency.py::test_sklearn_compliance, argvalues type: generator[0m
[1m[31mE   Please convert to a list or tuple.[0m
[1m[31mE   See https://docs.pytest.org/en/stable/deprecations.html#parametrize-iterators[0m
[31m[1m___________ ERROR collecting mne/decoding/tests/test_transformer.py ____________[0m
[1m[31m/usr/lib/python3/dist-packages/pluggy/_hooks.py[0m:512: in __call__
    [0m[94mreturn[39;49;00m [96mself[39;49;00m._hookexec([96mself[39;49;00m.name, [96mself[39;49;00m._hookimpls.copy(), kwargs, firstresult)[90m[39;49;00m
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^[90m[39;49;00m
[1m[31m/usr/lib/python3/dist-packages/pluggy/_manager.py[0m:120: in _hookexec
    [0m[94mreturn[39;49;00m [96mself[39;49;00m._inner_hookexec(hook_name, methods, kwargs, firstresult)[90m[39;49;00m
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^[90m[39;49;00m
[1m[31m/usr/lib/python3/dist-packages/_pytest/python.py[0m:250: in pytest_pycollect_makeitem
    [0m[94mreturn[39;49;00m [96mlist[39;49;00m(collector._genfunctions(name, obj))[90m[39;49;00m
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^[90m[39;49;00m
[1m[31m/usr/lib/python3/dist-packages/_pytest/python.py[0m:476: in _genfunctions
    [0m[96mself[39;49;00m.ihook.pytest_generate_tests.call_extra(methods, [96mdict[39;49;00m(metafunc=metafunc))[90m[39;49;00m
[1m[31m/usr/lib/python3/dist-packages/pluggy/_hooks.py[0m:573: in call_extra
    [0m[94mreturn[39;49;00m [96mself[39;49;00m._hookexec([96mself[39;49;00m.name, hookimpls, kwargs, firstresult)[90m[39;49;00m
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^[90m[39;49;00m
[1m[31m/usr/lib/python3/dist-packages/pluggy/_manager.py[0m:120: in _hookexec
    [0m[94mreturn[39;49;00m [96mself[39;49;00m._inner_hookexec(hook_name, methods, kwargs, firstresult)[90m[39;49;00m
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^[90m[39;49;00m
[1m[31m/usr/lib/python3/dist-packages/_pytest/python.py[0m:124: in pytest_generate_tests
    [0mmetafunc.parametrize(*marker.args, **marker.kwargs, _param_mark=marker)[90m[39;49;00m
[1m[31m/usr/lib/python3/dist-packages/_pytest/python.py[0m:1316: in parametrize
    [0margnames, parametersets = ParameterSet._for_parametrize([90m[39;49;00m
[1m[31m/usr/lib/python3/dist-packages/_pytest/mark/structures.py[0m:202: in _for_parametrize
    [0mwarnings.warn([90m[39;49;00m
[1m[31mE   pytest.PytestRemovedIn10Warning: Passing a non-Collection iterable to parametrize is deprecated.[0m
[1m[31mE   Test: mne/decoding/tests/test_transformer.py::test_sklearn_compliance, argvalues type: generator[0m
[1m[31mE   Please convert to a list or tuple.[0m
[1m[31mE   See https://docs.pytest.org/en/stable/deprecations.html#parametrize-iterators[0m
[31m[1m______________ ERROR collecting mne/decoding/tests/test_xdawn.py _______________[0m
[1m[31m/usr/lib/python3/dist-packages/pluggy/_hooks.py[0m:512: in __call__
    [0m[94mreturn[39;49;00m [96mself[39;49;00m._hookexec([96mself[39;49;00m.name, [96mself[39;49;00m._hookimpls.copy(), kwargs, firstresult)[90m[39;49;00m
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^[90m[39;49;00m
[1m[31m/usr/lib/python3/dist-packages/pluggy/_manager.py[0m:120: in _hookexec
    [0m[94mreturn[39;49;00m [96mself[39;49;00m._inner_hookexec(hook_name, methods, kwargs, firstresult)[90m[39;49;00m
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^[90m[39;49;00m
[1m[31m/usr/lib/python3/dist-packages/_pytest/python.py[0m:250: in pytest_pycollect_makeitem
    [0m[94mreturn[39;49;00m [96mlist[39;49;00m(collector._genfunctions(name, obj))[90m[39;49;00m
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^[90m[39;49;00m
[1m[31m/usr/lib/python3/dist-packages/_pytest/python.py[0m:476: in _genfunctions
    [0m[96mself[39;49;00m.ihook.pytest_generate_tests.call_extra(methods, [96mdict[39;49;00m(metafunc=metafunc))[90m[39;49;00m
[1m[31m/usr/lib/python3/dist-packages/pluggy/_hooks.py[0m:573: in call_extra
    [0m[94mreturn[39;49;00m [96mself[39;49;00m._hookexec([96mself[39;49;00m.name, hookimpls, kwargs, firstresult)[90m[39;49;00m
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^[90m[39;49;00m
[1m[31m/usr/lib/python3/dist-packages/pluggy/_manager.py[0m:120: in _hookexec
    [0m[94mreturn[39;49;00m [96mself[39;49;00m._inner_hookexec(hook_name, methods, kwargs, firstresult)[90m[39;49;00m
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^[90m[39;49;00m
[1m[31m/usr/lib/python3/dist-packages/_pytest/python.py[0m:124: in pytest_generate_tests
    [0mmetafunc.parametrize(*marker.args, **marker.kwargs, _param_mark=marker)[90m[39;49;00m
[1m[31m/usr/lib/python3/dist-packages/_pytest/python.py[0m:1316: in parametrize
    [0margnames, parametersets = ParameterSet._for_parametrize([90m[39;49;00m
[1m[31m/usr/lib/python3/dist-packages/_pytest/mark/structures.py[0m:202: in _for_parametrize
    [0mwarnings.warn([90m[39;49;00m
[1m[31mE   pytest.PytestRemovedIn10Warning: Passing a non-Collection iterable to parametrize is deprecated.[0m
[1m[31mE   Test: mne/decoding/tests/test_xdawn.py::test_sklearn_compliance, argvalues type: generator[0m
[1m[31mE   Please convert to a list or tuple.[0m
[1m[31mE   See https://docs.pytest.org/en/stable/deprecations.html#parametrize-iterators[0m
- generated xml file: /<<PKGBUILDDIR>>/junit-results.xml -
[36m[1m=========================== short test summary info ============================[0m
[31mERROR[0m mne/decoding/tests/test_base.py - pytest.PytestRemovedIn10Warning: Passing a non-Collection iterable to param...
[31mERROR[0m mne/decoding/tests/test_csp.py - pytest.PytestRemovedIn10Warning: Passing a non-Collection iterable to param...
[31mERROR[0m mne/decoding/tests/test_ems.py - pytest.PytestRemovedIn10Warning: Passing a non-Collection iterable to param...
[31mERROR[0m mne/decoding/tests/test_ged.py - pytest.PytestRemovedIn10Warning: Passing a non-Collection iterable to param...
[31mERROR[0m mne/decoding/tests/test_receptive_field.py - pytest.PytestRemovedIn10Warning: Passing a non-Collection iterable to param...
[31mERROR[0m mne/decoding/tests/test_search_light.py - pytest.PytestRemovedIn10Warning: Passing a non-Collection iterable to param...
[31mERROR[0m mne/decoding/tests/test_ssd.py - pytest.PytestRemovedIn10Warning: Passing a non-Collection iterable to param...
[31mERROR[0m mne/decoding/tests/test_time_frequency.py - pytest.PytestRemovedIn10Warning: Passing a non-Collection iterable to param...
[31mERROR[0m mne/decoding/tests/test_transformer.py - pytest.PytestRemovedIn10Warning: Passing a non-Collection iterable to param...
[31mERROR[0m mne/decoding/tests/test_xdawn.py - pytest.PytestRemovedIn10Warning: Passing a non-Collection iterable to param...
[33mSKIPPED[0m [1] ../../../usr/lib/python3/dist-packages/_pytest/doctest.py:551: unable to import module PosixPath('/<<PKGBUILDDIR>>/mne/_edf/open.py')
[33mSKIPPED[0m [2] mne/io/ant/tests/test_ant.py:18: could not import 'antio': No module named 'antio'
[33mSKIPPED[0m [2] mne/io/curry/tests/test_curry.py:33: could not import 'curryreader': No module named 'curryreader'
[33mSKIPPED[0m [2] mne/io/fieldtrip/tests/test_fieldtrip.py:53: could not import 'pymatreader': No module named 'pymatreader'
[33mSKIPPED[0m [2] mne/io/mef/tests/test_mef.py:20: could not import 'pymef': No module named 'pymef'
[33mSKIPPED[0m [1] ../../../usr/lib/python3/dist-packages/_pytest/doctest.py:551: unable to import module PosixPath('/<<PKGBUILDDIR>>/mne/viz/backends/_notebook.py')
[33mSKIPPED[0m [1] ../../../usr/lib/python3/dist-packages/_pytest/doctest.py:551: unable to import module PosixPath('/<<PKGBUILDDIR>>/mne/viz/backends/_pyvista.py')
[33mSKIPPED[0m [1] ../../../usr/lib/python3/dist-packages/_pytest/doctest.py:551: unable to import module PosixPath('/<<PKGBUILDDIR>>/mne/viz/backends/_qt.py')
!!!!!!!!!!!!!!!!!!! Interrupted: 10 errors during collection !!!!!!!!!!!!!!!!!!!
[31m================= [33m12 skipped[0m, [33m1 deselected[0m, [31m[1m10 errors[0m[31m in 7.64s[0m[31m =================[0m
make[1]: *** [debian/rules:23: override_dh_auto_test] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:14: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess failed with exit status 2
--------------------------------------------------------------------------------


From pini at debian.org  Wed Jul  1 18:16:35 2026
From: pini at debian.org (pini at debian.org)
Date: Wed, 01 Jul 2026 19:16:35 +0200
Subject: [Debian-med-packaging] Bug#1139615: unifrac-tools: FTBFS against
 HDF5 2.1.0
In-Reply-To: <akTJ7aNlpycGv_Oz@an3as.eu>
References: <akTJ7aNlpycGv_Oz@an3as.eu>
 <178108370351.25536.1213529281115429015.reportbug@pinibrem14>
Message-ID: <973f22a94d532ffcdd4842650604640b@debian.org>

Hi,

Le 2026-07-01 10:03, Andreas Tille a ?crit?:
> Control: tags -1 help
> Control: tags -1 - pending
> Thanks
> 
> Hi Gilles and Aaron,
> 
> Salsa kindly has tagged that patch pending when I applied the patch 
> from
> Gilles.  When I decided to build the latest upstream version of
> unifrac-tools I first had to package a new dependency which is now
> available.  I had to adapt the patch for src/Makefile in several ways
> and it seems I managed to mess it up again as you can see in Salsa CI
> 
>    https://salsa.debian.org/med-team/unifrac-tools/-/jobs/9880561
> 
> Any help would be welcome - direct pushing to the Git repository (any
> DD has push permissions) or MRs welcome.
> 
> Thanks a lot for your help
>    Andreas.

Done.

You shouldn't step in packaging a new release of this package if you
don't understand what its current patches are for and how to properly
refresh them.

My apologies for the harsh tone above, but English is not my native
language, and I don't know how to better express how this has upset
me.

Best,
_g.
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From tille at debian.org  Wed Jul  1 20:48:45 2026
From: tille at debian.org (Andreas Tille)
Date: Wed, 1 Jul 2026 21:48:45 +0200
Subject: [Debian-med-packaging] Bug#1139615: unifrac-tools: FTBFS against
 HDF5 2.1.0
In-Reply-To: <973f22a94d532ffcdd4842650604640b@debian.org>
References: <akTJ7aNlpycGv_Oz@an3as.eu>
 <973f22a94d532ffcdd4842650604640b@debian.org>
 <178108370351.25536.1213529281115429015.reportbug@pinibrem14>
Message-ID: <akVvHZ6f1D9w7q7Q@an3as.eu>

Control: tags -1 pending
Control: tags -1 - help
Thanks

Hi

Am Wed, Jul 01, 2026 at 07:16:35PM +0200 schrieb pini at debian.org:
> 
> Done.

Thanks a lot for your quick help
    Andreas.

-- 
https://fam-tille.de


From owner at bugs.debian.org  Wed Jul  1 20:53:02 2026
From: owner at bugs.debian.org (Debian Bug Tracking System)
Date: Wed, 01 Jul 2026 19:53:02 +0000
Subject: [Debian-med-packaging] Processed: Re: unifrac-tools: FTBFS against
 HDF5 2.1.0
References: <akVvHZ6f1D9w7q7Q@an3as.eu>
 <178108370351.25536.1213529281115429015.reportbug@pinibrem14>
Message-ID: <handler.s.B1139615.17829353282629819.transcript@bugs.debian.org>

Processing control commands:

> tags -1 pending
Bug #1139615 [src:unifrac-tools] unifrac-tools: FTBFS against HDF5 2.1.0
Added tag(s) pending.
> tags -1 - help
Bug #1139615 [src:unifrac-tools] unifrac-tools: FTBFS against HDF5 2.1.0
Removed tag(s) help.

-- 
1139615: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139615
Debian Bug Tracking System
Contact owner at bugs.debian.org with problems


From noreply at salsa.debian.org  Wed Jul  1 21:53:53 2026
From: noreply at salsa.debian.org (Rebecca N. Palmer)
Date: Wed, 01 Jul 2026 20:53:53 +0000
Subject: [Debian-med-packaging] Bug#1141070: marked as pending in snakemake
References: <178272388485.3561680.11505699919201070823.reportbug@belkar.wrar.name>
Message-ID: <6a457e61cca4b_576151893270@godard.mail>

Control: tag -1 pending

Hello,

Bug #1141070 in snakemake reported by you has been fixed in the
Git repository and is awaiting an upload. You can see the commit
message below and you can check the diff of the fix at:

https://salsa.debian.org/med-team/snakemake/-/commit/2316ca65fe222a35f23ab26ae1799e0ba6e31824

------------------------------------------------------------------------
Fix config schema loading from local files. (Closes: #1141070)
------------------------------------------------------------------------

(this message was generated automatically)
-- 
Greetings

https://bugs.debian.org/1141070


From owner at bugs.debian.org  Wed Jul  1 22:25:06 2026
From: owner at bugs.debian.org (Debian Bug Tracking System)
Date: Wed, 01 Jul 2026 21:25:06 +0000
Subject: [Debian-med-packaging] Processed: Bug#1141070 marked as pending in
 snakemake
References: <6a457e61cca4b_576151893270@godard.mail>
 <178272388485.3561680.11505699919201070823.reportbug@belkar.wrar.name>
Message-ID: <handler.s.U1141070.17829410872707204.transcript@bugs.debian.org>

Processing control commands:

> tag -1 pending
Bug #1141070 [src:snakemake] snakemake: FTBFS: KeyError
Added tag(s) pending.

-- 
1141070: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1141070
Debian Bug Tracking System
Contact owner at bugs.debian.org with problems


From ftpmaster at ftp-master.debian.org  Wed Jul  1 23:07:27 2026
From: ftpmaster at ftp-master.debian.org (Debian FTP Masters)
Date: Wed, 01 Jul 2026 22:07:27 +0000
Subject: [Debian-med-packaging] Processing of
 snakemake_7.32.4-12_source.changes
Message-ID: <E1wf35b-004gup-2z@usper.debian.org>

snakemake_7.32.4-12_source.changes uploaded successfully to localhost
along with the files:
  snakemake_7.32.4-12.dsc
  snakemake_7.32.4-12.debian.tar.xz
  snakemake_7.32.4-12_source.buildinfo

Greetings,

	Your Debian queue daemon (running on host usper.debian.org)


From ftpmaster at ftp-master.debian.org  Wed Jul  1 23:19:07 2026
From: ftpmaster at ftp-master.debian.org (Debian FTP Masters)
Date: Wed, 01 Jul 2026 22:19:07 +0000
Subject: [Debian-med-packaging] snakemake_7.32.4-12_source.changes ACCEPTED
 into unstable
Message-ID: <E1wf3Gt-0000000F1SR-3oCN@fasolo.debian.org>

Thank you for your contribution to Debian.



Accepted:

-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 1.8
Date: Wed, 01 Jul 2026 22:06:28 +0100
Source: snakemake
Architecture: source
Version: 7.32.4-12
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Changed-By: Rebecca N. Palmer <rebecca_palmer at zoho.com>
Closes: 1141070
Changes:
 snakemake (7.32.4-12) unstable; urgency=medium
 .
   * Re-enable R/rpy2 tests.
   * Make config schema loading from local files
     Python 3.14 compatible. (Closes: #1141070)
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From owner at bugs.debian.org  Wed Jul  1 23:21:02 2026
From: owner at bugs.debian.org (Debian Bug Tracking System)
Date: Wed, 01 Jul 2026 22:21:02 +0000
Subject: [Debian-med-packaging] Bug#1141070: marked as done (snakemake:
 FTBFS: KeyError)
References: <E1wf3Gt-0000000F1Sa-49nv@fasolo.debian.org>
 <178272388485.3561680.11505699919201070823.reportbug@belkar.wrar.name>
Message-ID: <handler.1141070.D1141070.17829443502740913.ackdone@bugs.debian.org>

Your message dated Wed, 01 Jul 2026 22:19:07 +0000
with message-id <E1wf3Gt-0000000F1Sa-49nv at fasolo.debian.org>
and subject line Bug#1141070: fixed in snakemake 7.32.4-12
has caused the Debian Bug report #1141070,
regarding snakemake: FTBFS: KeyError
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact owner at bugs.debian.org
immediately.)


-- 
1141070: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1141070
Debian Bug Tracking System
Contact owner at bugs.debian.org with problems
-------------- next part --------------
An embedded message was scrubbed...
From: Andrey Rakhmatullin <wrar at debian.org>
Subject: snakemake: FTBFS: KeyError
Date: Mon, 29 Jun 2026 14:04:44 +0500
Size: 4816
URL: <http://alioth-lists.debian.net/pipermail/debian-med-packaging/attachments/20260701/dd08f68c/attachment.eml>
-------------- next part --------------
An embedded message was scrubbed...
From: Debian FTP Masters <ftpmaster at ftp-master.debian.org>
Subject: Bug#1141070: fixed in snakemake 7.32.4-12
Date: Wed, 01 Jul 2026 22:19:07 +0000
Size: 6789
URL: <http://alioth-lists.debian.net/pipermail/debian-med-packaging/attachments/20260701/dd08f68c/attachment-0001.eml>

From noreply at release.debian.org  Thu Jul  2 05:39:10 2026
From: noreply at release.debian.org (Debian testing watch)
Date: Thu, 02 Jul 2026 04:39:10 +0000
Subject: [Debian-med-packaging] openslide-python 1.4.6-2 MIGRATED to testing
Message-ID: <E1wf9Cg-004fr9-1V@respighi.debian.org>

FYI: The status of the openslide-python source package
in Debian's testing distribution has changed.

  Previous version: 1.4.3-1
  Current version:  1.4.6-2

-- 
This email is automatically generated once a day.  As the installation of
new packages into testing happens multiple times a day you will receive
later changes on the next day.
See https://release.debian.org/testing-watch/ for more information.


From noreply at release.debian.org  Thu Jul  2 05:39:09 2026
From: noreply at release.debian.org (Debian testing watch)
Date: Thu, 02 Jul 2026 04:39:09 +0000
Subject: [Debian-med-packaging] libmmap-allocator
 0.4.0+git20200122.adbfbe1-4 MIGRATED to testing
Message-ID: <E1wf9Cf-004fpc-2E@respighi.debian.org>

FYI: The status of the libmmap-allocator source package
in Debian's testing distribution has changed.

  Previous version: 0.4.0+git20200122.adbfbe1-2.1
  Current version:  0.4.0+git20200122.adbfbe1-4

-- 
This email is automatically generated once a day.  As the installation of
new packages into testing happens multiple times a day you will receive
later changes on the next day.
See https://release.debian.org/testing-watch/ for more information.


From noreply at release.debian.org  Thu Jul  2 05:39:35 2026
From: noreply at release.debian.org (Debian testing autoremoval watch)
Date: Thu, 02 Jul 2026 04:39:35 +0000
Subject: [Debian-med-packaging] biomaj3 is marked for autoremoval from
 testing
Message-ID: <E1wf9D5-004g4S-37@respighi.debian.org>

biomaj3 3.1.24-4 is marked for autoremoval from testing on 2026-07-30

It (build-)depends on packages with these RC bugs:
1138813: sphinx-gallery: <!nodoc> build dependency removed from testing
 https://bugs.debian.org/1138813



For more information on the autoremoval process, including hints to prevent
autoremoval can be found on the wiki: https://wiki.debian.org/Autoremoval

This mail is generated by:
https://salsa.debian.org/release-team/release-tools/-/blob/master/mailer/mail_autoremovals.pl

Autoremoval data is generated by:
https://salsa.debian.org/qa/udd/-/blob/master/udd/testing_autoremovals_gatherer.pl


From owner at bugs.debian.org  Thu Jul  2 06:21:08 2026
From: owner at bugs.debian.org (Debian Bug Tracking System)
Date: Thu, 02 Jul 2026 05:21:08 +0000
Subject: [Debian-med-packaging] Processed: python-mne: FTBFS: E
 pytest.PytestRemovedIn10Warning: Passing a non-Collection iterable to
 parametrize is deprecated.
References: <46c886dce0b54f358d7612c5bcdc218a@geobasis-bb.de>
Message-ID: <handler.s.C.17829695653046116.transcript@bugs.debian.org>

Processing commands for control at bugs.debian.org:

> reassign 1141210 src:scikit-learn
Bug #1141210 [src:python-mne] python-mne: FTBFS: E   pytest.PytestRemovedIn10Warning: Passing a non-Collection iterable to parametrize is deprecated.
Bug reassigned from package 'src:python-mne' to 'src:scikit-learn'.
No longer marked as found in versions python-mne/1.12.1-1.
Ignoring request to alter fixed versions of bug #1141210 to the same values previously set
> affects 1141210 src:python-mne
Bug #1141210 [src:scikit-learn] python-mne: FTBFS: E   pytest.PytestRemovedIn10Warning: Passing a non-Collection iterable to parametrize is deprecated.
Added indication that 1141210 affects src:python-mne
> thanks
Stopping processing here.

Please contact me if you need assistance.
-- 
1141210: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1141210
Debian Bug Tracking System
Contact owner at bugs.debian.org with problems


From ftpmaster at ftp-master.debian.org  Thu Jul  2 14:11:45 2026
From: ftpmaster at ftp-master.debian.org (Debian FTP Masters)
Date: Thu, 02 Jul 2026 13:11:45 +0000
Subject: [Debian-med-packaging] Processing of
 unifrac-tools_1.6.1-1_source.changes
Message-ID: <E1wfHCj-005HKF-26@usper.debian.org>

unifrac-tools_1.6.1-1_source.changes uploaded successfully to localhost
along with the files:
  unifrac-tools_1.6.1-1.dsc
  unifrac-tools_1.6.1.orig.tar.gz
  unifrac-tools_1.6.1-1.debian.tar.xz
  unifrac-tools_1.6.1-1_amd64.buildinfo

Greetings,

	Your Debian queue daemon (running on host usper.debian.org)


From ftpmaster at ftp-master.debian.org  Thu Jul  2 14:19:09 2026
From: ftpmaster at ftp-master.debian.org (Debian FTP Masters)
Date: Thu, 02 Jul 2026 13:19:09 +0000
Subject: [Debian-med-packaging] unifrac-tools_1.6.1-1_source.changes
 ACCEPTED into unstable
Message-ID: <E1wfHJt-00000000Dg0-3tFB@fasolo.debian.org>

Thank you for your contribution to Debian.



Accepted:

-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 1.8
Date: Thu, 02 Jul 2026 14:53:58 +0200
Source: unifrac-tools
Architecture: source
Version: 1.6.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Changed-By: Andreas Tille <tille at debian.org>
Closes: 1105659 1139615
Changes:
 unifrac-tools (1.6.1-1) unstable; urgency=medium
 .
   [ Andreas Tille ]
   * New upstream version
     Closes: #1105659
   * d/watch: version=5
   * Standards-Version: 4.7.4 (routine-update)
   * Reflow Uploaders field (cme)
   * Remove Priority field (cme)
   * Drop 'Rules-Requires-Root: no' from d/control (routine-update)
   * Build-Depends: libskbb-dev
   * Reformat the Last-Update date as ISO YYYY-MM-DD.
   * No need to use dh-exec any more
 .
   [ Gilles Filippini ]
   * Fix FTBFS against HDF5 2.1.0
     Closes: #1139615
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From owner at bugs.debian.org  Thu Jul  2 14:21:02 2026
From: owner at bugs.debian.org (Debian Bug Tracking System)
Date: Thu, 02 Jul 2026 13:21:02 +0000
Subject: [Debian-med-packaging] Bug#1139615: marked as done (unifrac-tools:
 FTBFS against HDF5 2.1.0)
References: <E1wfHJu-00000000DgH-0GTw@fasolo.debian.org>
 <178108370351.25536.1213529281115429015.reportbug@pinibrem14>
Message-ID: <handler.1139615.D1139615.17829983523382350.ackdone@bugs.debian.org>

Your message dated Thu, 02 Jul 2026 13:19:10 +0000
with message-id <E1wfHJu-00000000DgH-0GTw at fasolo.debian.org>
and subject line Bug#1139615: fixed in unifrac-tools 1.6.1-1
has caused the Debian Bug report #1139615,
regarding unifrac-tools: FTBFS against HDF5 2.1.0
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact owner at bugs.debian.org
immediately.)


-- 
1139615: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139615
Debian Bug Tracking System
Contact owner at bugs.debian.org with problems
-------------- next part --------------
An embedded message was scrubbed...
From: Gilles Filippini <pini at debian.org>
Subject: unifrac-tools: FTBFS against HDF5 2.1.0
Date: Wed, 10 Jun 2026 11:28:23 +0200
Size: 8501
URL: <http://alioth-lists.debian.net/pipermail/debian-med-packaging/attachments/20260702/ee5ab358/attachment.eml>
-------------- next part --------------
An embedded message was scrubbed...
From: Debian FTP Masters <ftpmaster at ftp-master.debian.org>
Subject: Bug#1139615: fixed in unifrac-tools 1.6.1-1
Date: Thu, 02 Jul 2026 13:19:10 +0000
Size: 7432
URL: <http://alioth-lists.debian.net/pipermail/debian-med-packaging/attachments/20260702/ee5ab358/attachment-0001.eml>

From owner at bugs.debian.org  Thu Jul  2 14:21:01 2026
From: owner at bugs.debian.org (Debian Bug Tracking System)
Date: Thu, 02 Jul 2026 13:21:01 +0000
Subject: [Debian-med-packaging] Bug#1105659: marked as done (unifrac-tools:
 FTBFS with make --shuffle=reverse: ld: cannot find -lssu: No such file or
 directory)
References: <E1wfHJu-00000000DgC-00cg@fasolo.debian.org>
 <aCOa2Tg0y-MYBnGu@grub.nussbaum.fr>
Message-ID: <handler.1105659.D1105659.17829983513382330.ackdone@bugs.debian.org>

Your message dated Thu, 02 Jul 2026 13:19:10 +0000
with message-id <E1wfHJu-00000000DgC-00cg at fasolo.debian.org>
and subject line Bug#1105659: fixed in unifrac-tools 1.6.1-1
has caused the Debian Bug report #1105659,
regarding unifrac-tools: FTBFS with make --shuffle=reverse: ld: cannot find -lssu: No such file or directory
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact owner at bugs.debian.org
immediately.)


-- 
1105659: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1105659
Debian Bug Tracking System
Contact owner at bugs.debian.org with problems
-------------- next part --------------
An embedded message was scrubbed...
From: Lucas Nussbaum <lucas at debian.org>
Subject: unifrac-tools: FTBFS with make --shuffle=reverse: ld: cannot find -lssu: No such file or directory
Date: Tue, 13 May 2025 21:17:45 +0200
Size: 4145
URL: <http://alioth-lists.debian.net/pipermail/debian-med-packaging/attachments/20260702/7c57e3dd/attachment-0002.eml>
-------------- next part --------------
An embedded message was scrubbed...
From: Debian FTP Masters <ftpmaster at ftp-master.debian.org>
Subject: Bug#1105659: fixed in unifrac-tools 1.6.1-1
Date: Thu, 02 Jul 2026 13:19:10 +0000
Size: 7373
URL: <http://alioth-lists.debian.net/pipermail/debian-med-packaging/attachments/20260702/7c57e3dd/attachment-0003.eml>

From ftpmaster at ftp-master.debian.org  Thu Jul  2 14:42:15 2026
From: ftpmaster at ftp-master.debian.org (Debian FTP Masters)
Date: Thu, 02 Jul 2026 13:42:15 +0000
Subject: [Debian-med-packaging] Processing of unifrac_1.5.1-1_source.changes
Message-ID: <E1wfHgF-005Ila-13@usper.debian.org>

unifrac_1.5.1-1_source.changes uploaded successfully to localhost
along with the files:
  unifrac_1.5.1-1.dsc
  unifrac_1.5.1.orig.tar.gz
  unifrac_1.5.1-1.debian.tar.xz
  unifrac_1.5.1-1_amd64.buildinfo

Greetings,

	Your Debian queue daemon (running on host usper.debian.org)


From ftpmaster at ftp-master.debian.org  Thu Jul  2 14:49:52 2026
From: ftpmaster at ftp-master.debian.org (Debian FTP Masters)
Date: Thu, 02 Jul 2026 13:49:52 +0000
Subject: [Debian-med-packaging] unifrac_1.5.1-1_source.changes ACCEPTED into
 unstable
Message-ID: <E1wfHnc-00000000Ifo-0XV1@fasolo.debian.org>

Thank you for your contribution to Debian.



Accepted:

-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 1.8
Date: Thu, 02 Jul 2026 15:23:08 +0200
Source: unifrac
Architecture: source
Version: 1.5.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Changed-By: Andreas Tille <tille at debian.org>
Changes:
 unifrac (1.5.1-1) unstable; urgency=medium
 .
   * New upstream version
   * d/watch: version=5
   * Standards-Version: 4.7.4 (routine-update)
   * Reflow Uploaders field (cme)
   * Reformat the Last-Update date as ISO YYYY-MM-DD.
   * Bump versioned Build-Depends: libssu-dev (>= 1.6~)
   * d/rules: More sensible use for numpy3
Checksums-Sha1:
 bd1b744193a26692e93b623e4975a0d9f7c1c6f6 2280 unifrac_1.5.1-1.dsc
 ca2fada004e451bc5f4ad60539eda85a2ba44dbe 71613 unifrac_1.5.1.orig.tar.gz
 094cc2425c87e186d28a6a054005ca685f174804 6612 unifrac_1.5.1-1.debian.tar.xz
 f6b8d07dafb2a23cc08d895fa1b0c7cf368876eb 11375 unifrac_1.5.1-1_amd64.buildinfo
Checksums-Sha256:
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Files:
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 025da586df5075db0b0fe8ac07d7c74c 71613 science optional unifrac_1.5.1.orig.tar.gz
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From noreply at salsa.debian.org  Thu Jul  2 16:07:46 2026
From: noreply at salsa.debian.org (Andreas Tille)
Date: Thu, 02 Jul 2026 15:07:46 +0000
Subject: [Debian-med-packaging] Bug#1139602: marked as pending in gwyddion
References: <178107809799.52922.15653629115273448371.reportbug@pinibrem14>
Message-ID: <6a467ec2a52b0_57615b8942d9@godard.mail>

Control: tag -1 pending

Hello,

Bug #1139602 in gwyddion reported by you has been fixed in the
Git repository and is awaiting an upload. You can see the commit
message below and you can check the diff of the fix at:

https://salsa.debian.org/med-team/gwyddion/-/commit/8ee8fead2184760c907f551e7fb173b9668b845a

------------------------------------------------------------------------
Fix FTBFS against HDF5 2.1.0 Closes: #1139602
------------------------------------------------------------------------

(this message was generated automatically)
-- 
Greetings

https://bugs.debian.org/1139602


From owner at bugs.debian.org  Thu Jul  2 16:09:02 2026
From: owner at bugs.debian.org (Debian Bug Tracking System)
Date: Thu, 02 Jul 2026 15:09:02 +0000
Subject: [Debian-med-packaging] Processed: Bug#1139602 marked as pending in
 gwyddion
References: <6a467ec2a52b0_57615b8942d9@godard.mail>
 <178107809799.52922.15653629115273448371.reportbug@pinibrem14>
Message-ID: <handler.s.U1139602.17830048693462766.transcript@bugs.debian.org>

Processing control commands:

> tag -1 pending
Bug #1139602 [src:gwyddion] gwyddion: FTBFS against HDF5 2.1.0
Added tag(s) pending.

-- 
1139602: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139602
Debian Bug Tracking System
Contact owner at bugs.debian.org with problems


From owner at bugs.debian.org  Thu Jul  2 17:53:03 2026
From: owner at bugs.debian.org (Debian Bug Tracking System)
Date: Thu, 02 Jul 2026 16:53:03 +0000
Subject: [Debian-med-packaging] Processed: block 1130323 with 1141163
 1130358 1140944 1131792 1140945 1141280 1141165
References: <1783011127-541621539@bts.debian.org>
Message-ID: <handler.s.C.17830111303541769.transcript@bugs.debian.org>

Processing commands for control at bugs.debian.org:

> block 1130323 with 1141163 1130358 1140944 1131792 1140945 1141280 1141165
Bug #1130323 [release.debian.org] transition: python 3.14 as default
1130323 was blocked by: 1125251 1127767 1127773 1130893 1135916 1137392 1139538 1140857 1140889 1141089 1141105 1141118 1141123 1141160 1141233
1130323 was not blocking any bugs.
Added blocking bug(s) of 1130323: 1141280, 1141163, 1141165, 1140944, 1131792, 1130358, and 1140945
> thanks
Stopping processing here.

Please contact me if you need assistance.
-- 
1130323: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1130323
Debian Bug Tracking System
Contact owner at bugs.debian.org with problems


From owner at bugs.debian.org  Thu Jul  2 17:57:03 2026
From: owner at bugs.debian.org (Debian Bug Tracking System)
Date: Thu, 02 Jul 2026 16:57:03 +0000
Subject: [Debian-med-packaging] Processed: severity of 1131795 is serious
References: <1783011249-982964197@bts.debian.org>
Message-ID: <handler.s.C.17830112523543397.transcript@bugs.debian.org>

Processing commands for control at bugs.debian.org:

> severity 1131795 serious
Bug #1131795 [src:metastudent] metastudent: autopkgtest failure with Python 3.14
Severity set to 'serious' from 'important'
> thanks
Stopping processing here.

Please contact me if you need assistance.
-- 
1131795: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1131795
Debian Bug Tracking System
Contact owner at bugs.debian.org with problems


From owner at bugs.debian.org  Thu Jul  2 18:01:03 2026
From: owner at bugs.debian.org (Debian Bug Tracking System)
Date: Thu, 02 Jul 2026 17:01:03 +0000
Subject: [Debian-med-packaging] Processed: block 1130323 with 1140946
 1131795 1141167 1131796 1141168 1140949 1130351 1130357 1141066
References: <1783011551-395630120@bts.debian.org>
Message-ID: <handler.s.C.17830115543546122.transcript@bugs.debian.org>

Processing commands for control at bugs.debian.org:

> block 1130323 with 1140946 1131795 1141167 1131796 1141168 1140949 1130351 1130357 1141066
Bug #1130323 [release.debian.org] transition: python 3.14 as default
1130323 was blocked by: 1125251 1127767 1127773 1130358 1130893 1131792 1135916 1137392 1139538 1140857 1140889 1140944 1140945 1141089 1141105 1141118 1141123 1141160 1141163 1141165 1141233 1141280
1130323 was not blocking any bugs.
Added blocking bug(s) of 1130323: 1131796, 1131795, 1141168, 1141167, 1130357, 1141066, 1140949, 1130351, 1140946, and 1131798
> thanks
Stopping processing here.

Please contact me if you need assistance.
-- 
1130323: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1130323
Debian Bug Tracking System
Contact owner at bugs.debian.org with problems


From wrar at debian.org  Thu Jul  2 18:01:26 2026
From: wrar at debian.org (Andrey Rakhmatullin)
Date: Thu, 02 Jul 2026 22:01:26 +0500
Subject: [Debian-med-packaging] Bug#1141283: iva: Autopkgtests fail: File
 "hiv_pcr_primers.fa" not found.
Message-ID: <178301168634.1043186.7404548943706944970.reportbug@belkar.wrar.name>

Package: iva
Version: 1.0.11+ds-6
Severity: serious

The following command failed with exit code 1
/usr/bin/iva --threads 1 --trimmomatic /usr/share/java/trimmomatic.jar
--pcr_primers hiv_pcr_primers.fa -f reads_1.fq.gz -r reads_2.fq.gz iva.out

The output was:

Error! File "hiv_pcr_primers.fa" not found. Cannot continue
Traceback (most recent call last):
  File "/usr/bin/iva", line 184, in <module>
    p1.start()
    ~~~~~~~~^^
  File "/usr/lib/python3.14/multiprocessing/process.py", line 121, in start
    self._popen = self._Popen(self)
                  ~~~~~~~~~~~^^^^^^
  File "/usr/lib/python3.14/multiprocessing/context.py", line 230, in _Popen
    return _default_context.get_context().Process._Popen(process_obj)
           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^
  File "/usr/lib/python3.14/multiprocessing/context.py", line 306, in _Popen
    return Popen(process_obj)
  File "/usr/lib/python3.14/multiprocessing/popen_forkserver.py", line 35, in
__init__
    super().__init__(process_obj)
    ~~~~~~~~~~~~~~~~^^^^^^^^^^^^^
  File "/usr/lib/python3.14/multiprocessing/popen_fork.py", line 20, in
__init__
    self._launch(process_obj)
    ~~~~~~~~~~~~^^^^^^^^^^^^^
  File "/usr/lib/python3.14/multiprocessing/popen_forkserver.py", line 51, in
_launch
    self.sentinel, w = forkserver.connect_to_new_process(self._fds)
                       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^
  File "/usr/lib/python3.14/multiprocessing/forkserver.py", line 106, in
connect_to_new_process
    connection.answer_challenge(
    ~~~~~~~~~~~~~~~~~~~~~~~~~~~^
            wrapped_client, self._forkserver_authkey)
            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/lib/python3.14/multiprocessing/connection.py", line 995, in
answer_challenge
    message = connection.recv_bytes(256)         # reject large message
  File "/usr/lib/python3.14/multiprocessing/connection.py", line 226, in
recv_bytes
    buf = self._recv_bytes(maxlength)
  File "/usr/lib/python3.14/multiprocessing/connection.py", line 451, in
_recv_bytes
    buf = self._recv(4)
  File "/usr/lib/python3.14/multiprocessing/connection.py", line 416, in _recv
    chunk = read(handle, to_read)
ConnectionResetError: [Errno 104] Connection reset by peer


-- System Information:
Debian Release: forky/sid
  APT prefers unstable-debug
  APT policy: (500, 'unstable-debug'), (500, 'unstable'), (500, 'testing'), (101, 'experimental')
Architecture: amd64 (x86_64)
Foreign Architectures: i386

Kernel: Linux 7.0.13+deb14-amd64 (SMP w/16 CPU threads; PREEMPT)
Kernel taint flags: TAINT_OOT_MODULE, TAINT_UNSIGNED_MODULE
Locale: LANG=ru_RU.UTF-8, LC_CTYPE=ru_RU.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Versions of packages iva depends on:
ii  default-jre-headless  2:1.25-77
pn  fastaq                <none>
pn  kmc                   <none>
pn  mummer                <none>
ii  perl                  5.40.1-8
ii  python3               3.13.9-3+b1
pn  python3-networkx      <none>
ii  python3-numpy         1:2.4.6+ds-2
ii  python3-packaging     26.2-2
pn  python3-pysam         <none>
pn  samtools              <none>
pn  smalt                 <none>

Versions of packages iva recommends:
pn  bioperl      <none>
pn  r-base-core  <none>
pn  trimmomatic  <none>

iva suggests no packages.


From owner at bugs.debian.org  Thu Jul  2 18:05:05 2026
From: owner at bugs.debian.org (Debian Bug Tracking System)
Date: Thu, 02 Jul 2026 17:05:05 +0000
Subject: [Debian-med-packaging] Processed: block 1130323 with 1141283
References: <1783011859-316396670@bts.debian.org>
Message-ID: <handler.s.C.17830118623549085.transcript@bugs.debian.org>

Processing commands for control at bugs.debian.org:

> block 1130323 with 1141283
Bug #1130323 [release.debian.org] transition: python 3.14 as default
1130323 was blocked by: 1125251 1127767 1127773 1130351 1130357 1130358 1130893 1131792 1131795 1131796 1131798 1135916 1137392 1139538 1140857 1140889 1140944 1140945 1140946 1140949 1141066 1141089 1141105 1141118 1141123 1141160 1141163 1141165 1141167 1141168 1141233 1141280 1141285
1130323 was not blocking any bugs.
Added blocking bug(s) of 1130323: 1141283
> thanks
Stopping processing here.

Please contact me if you need assistance.
-- 
1130323: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1130323
Debian Bug Tracking System
Contact owner at bugs.debian.org with problems


From ftpmaster at ftp-master.debian.org  Thu Jul  2 18:19:54 2026
From: ftpmaster at ftp-master.debian.org (Debian FTP Masters)
Date: Thu, 02 Jul 2026 17:19:54 +0000
Subject: [Debian-med-packaging] Processing of gwyddion_3.11-1_source.changes
Message-ID: <E1wfL4s-005SH8-1v@usper.debian.org>

gwyddion_3.11-1_source.changes uploaded successfully to localhost
along with the files:
  gwyddion_3.11-1.dsc
  gwyddion_3.11.orig.tar.xz
  gwyddion_3.11.orig.tar.xz.asc
  gwyddion_3.11-1.debian.tar.xz
  gwyddion_3.11-1_amd64.buildinfo

Greetings,

	Your Debian queue daemon (running on host usper.debian.org)


From ftpmaster at ftp-master.debian.org  Thu Jul  2 18:34:35 2026
From: ftpmaster at ftp-master.debian.org (Debian FTP Masters)
Date: Thu, 02 Jul 2026 17:34:35 +0000
Subject: [Debian-med-packaging] gwyddion_3.11-1_source.changes ACCEPTED into
 unstable
Message-ID: <E1wfLJ5-000000015UT-2uf1@fasolo.debian.org>

Thank you for your contribution to Debian.



Accepted:

-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 1.8
Date: Thu, 02 Jul 2026 18:57:00 +0200
Source: gwyddion
Architecture: source
Version: 3.11-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Changed-By: Andreas Tille <tille at debian.org>
Closes: 1139602
Changes:
 gwyddion (3.11-1) unstable; urgency=medium
 .
   [ Andreas Tille ]
   * New upstream version
   * d/copyright: review
   * Add d/lrc.config
 .
   [ Gilles Filippini ]
   * Fix FTBFS against HDF5 2.1.0
     Closes: #1139602
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Files:
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From owner at bugs.debian.org  Thu Jul  2 18:37:26 2026
From: owner at bugs.debian.org (Debian Bug Tracking System)
Date: Thu, 02 Jul 2026 17:37:26 +0000
Subject: [Debian-med-packaging] Bug#1139602: marked as done (gwyddion: FTBFS
 against HDF5 2.1.0)
References: <E1wfLJ5-000000015Uc-3Cx8@fasolo.debian.org>
 <178107809799.52922.15653629115273448371.reportbug@pinibrem14>
Message-ID: <handler.1139602.D1139602.17830136773566368.ackdone@bugs.debian.org>

Your message dated Thu, 02 Jul 2026 17:34:35 +0000
with message-id <E1wfLJ5-000000015Uc-3Cx8 at fasolo.debian.org>
and subject line Bug#1139602: fixed in gwyddion 3.11-1
has caused the Debian Bug report #1139602,
regarding gwyddion: FTBFS against HDF5 2.1.0
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact owner at bugs.debian.org
immediately.)


-- 
1139602: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139602
Debian Bug Tracking System
Contact owner at bugs.debian.org with problems
-------------- next part --------------
An embedded message was scrubbed...
From: Gilles Filippini <pini at debian.org>
Subject: gwyddion: FTBFS against HDF5 2.1.0
Date: Wed, 10 Jun 2026 09:54:57 +0200
Size: 7931
URL: <http://alioth-lists.debian.net/pipermail/debian-med-packaging/attachments/20260702/9dbb2897/attachment-0002.eml>
-------------- next part --------------
An embedded message was scrubbed...
From: Debian FTP Masters <ftpmaster at ftp-master.debian.org>
Subject: Bug#1139602: fixed in gwyddion 3.11-1
Date: Thu, 02 Jul 2026 17:34:35 +0000
Size: 7191
URL: <http://alioth-lists.debian.net/pipermail/debian-med-packaging/attachments/20260702/9dbb2897/attachment-0003.eml>

From pgt at debian.org  Thu Jul  2 20:03:53 2026
From: pgt at debian.org (Pierre Gruet)
Date: Thu, 2 Jul 2026 21:03:53 +0200
Subject: [Debian-med-packaging] Bug#1139484: picard-tools: FTBFS: Test: Test
 method testCleanSam[1](simple_overhang.sam,
 99M1S)(picard.sam.CleanSamTest) produced standard out/err: Ignoring SAM
 validation error: ERROR::CIGAR_MAPS_OFF_REFERENCE:Read name simple_overhang,
 Read CIGAR M operator maps off end of reference
In-Reply-To: <akPKY_9CD5BZ85pH@an3as.eu>
References: <akPKY_9CD5BZ85pH@an3as.eu> <E1wWt3p-00ApDE-16@paradis.debian.org>
Message-ID: <0075a3b6-48b5-4695-8dca-00b0c0ca7a2a@debian.org>

Hi Andreas,

Le 30/06/2026 ? 15:53, Andreas Tille a ?crit?:
> Hi Pierre and others,
> 
> it seems the problem occures when creating the docs.  I wonder whether
> there is some simple solution for this problem or whether it might be a
> sensible means to deal with this problem by just not generating the docs
> and remove the libpicard-java-doc package.

I have also looked at this bug, on my machine I can see there are four 
failing tests (which seems to be consistent with the title of the bug 
report), I have not reached the build of the documentation yet.

So far I have not found what is going wrong in the tests. Some weeks ago 
I updated htsjdk to version 5.0.0, this might be the reaso although I 
don't remember picard FTBFS'ed at that time :/ Let's continue to 
investigate...

> 
> Kind regards
>      Andreas.
> 

All the best,

-- 
Pierre
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From noreply at release.debian.org  Fri Jul  3 05:39:15 2026
From: noreply at release.debian.org (Debian testing watch)
Date: Fri, 03 Jul 2026 04:39:15 +0000
Subject: [Debian-med-packaging] mcaller 1.0.3+git20210624.b415090-4 MIGRATED
 to testing
Message-ID: <E1wfVgJ-005rbY-05@respighi.debian.org>

FYI: The status of the mcaller source package
in Debian's testing distribution has changed.

  Previous version: 1.0.3+git20210624.b415090-3
  Current version:  1.0.3+git20210624.b415090-4

-- 
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From noreply at release.debian.org  Fri Jul  3 05:39:24 2026
From: noreply at release.debian.org (Debian testing watch)
Date: Fri, 03 Jul 2026 04:39:24 +0000
Subject: [Debian-med-packaging] scikit-bio-binaries 1.0.3-2 MIGRATED to
 testing
Message-ID: <E1wfVgS-005rru-2z@respighi.debian.org>

FYI: The status of the scikit-bio-binaries source package
in Debian's testing distribution has changed.

  Previous version: (not in testing)
  Current version:  1.0.3-2

-- 
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From wrar at debian.org  Fri Jul  3 13:44:21 2026
From: wrar at debian.org (Andrey Rakhmatullin)
Date: Fri, 03 Jul 2026 17:44:21 +0500
Subject: [Debian-med-packaging] Bug#1141363: metastudent: Homepage is 404
Message-ID: <178308266143.1269001.2262095049273752043.reportbug@belkar.wrar.name>

Source: metastudent
Version: 2.0.1-10
Severity: minor

https://www.cs.cit.tum.de/bio/home/owiki/index.php/Metastudent says "We are
sorry, this page does not exist (anymore)".


-- System Information:
Debian Release: forky/sid
  APT prefers unstable-debug
  APT policy: (500, 'unstable-debug'), (500, 'unstable'), (500, 'testing'), (101, 'experimental')
Architecture: amd64 (x86_64)
Foreign Architectures: i386

Kernel: Linux 7.0.13+deb14-amd64 (SMP w/16 CPU threads; PREEMPT)
Kernel taint flags: TAINT_OOT_MODULE, TAINT_UNSIGNED_MODULE
Locale: LANG=ru_RU.UTF-8, LC_CTYPE=ru_RU.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled


From info at icecer.com  Sat Jul  4 03:28:40 2026
From: info at icecer.com (ICECER 2026)
Date: Sat, 4 Jul 2026 02:28:40 +0000
Subject: [Debian-med-packaging] =?cp1254?q?IEEE_and_Scopus_publication_ch?=
 =?cp1254?q?ance_-_ICECER_=5BDeadline_extended=5D?=
Message-ID: <0100019f2af4e61a-848ed97d-5a05-4b8f-a078-ced95e8a6091-000000@email.amazonses.com>

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From noreply at release.debian.org  Sat Jul  4 05:39:15 2026
From: noreply at release.debian.org (Debian testing watch)
Date: Sat, 04 Jul 2026 04:39:15 +0000
Subject: [Debian-med-packaging] orthanc-dicomweb 1.23+dfsg-3 MIGRATED to
 testing
Message-ID: <E1wfs9r-0073Qf-1o@respighi.debian.org>

FYI: The status of the orthanc-dicomweb source package
in Debian's testing distribution has changed.

  Previous version: 1.23+dfsg-2
  Current version:  1.23+dfsg-3

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From noreply at release.debian.org  Sat Jul  4 05:39:14 2026
From: noreply at release.debian.org (Debian testing watch)
Date: Sat, 04 Jul 2026 04:39:14 +0000
Subject: [Debian-med-packaging] libvbz-hdf-plugin 1.0.13-1 MIGRATED to
 testing
Message-ID: <E1wfs9q-0073Oi-1Q@respighi.debian.org>

FYI: The status of the libvbz-hdf-plugin source package
in Debian's testing distribution has changed.

  Previous version: 1.0.2-3.1
  Current version:  1.0.13-1

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From noreply at release.debian.org  Sat Jul  4 05:39:14 2026
From: noreply at release.debian.org (Debian testing watch)
Date: Sat, 04 Jul 2026 04:39:14 +0000
Subject: [Debian-med-packaging] milib 2.2.0+dfsg-2 MIGRATED to testing
Message-ID: <E1wfs9q-0073PJ-2a@respighi.debian.org>

FYI: The status of the milib source package
in Debian's testing distribution has changed.

  Previous version: 2.2.0+dfsg-1
  Current version:  2.2.0+dfsg-2

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From noreply at release.debian.org  Sat Jul  4 05:39:16 2026
From: noreply at release.debian.org (Debian testing watch)
Date: Sat, 04 Jul 2026 04:39:16 +0000
Subject: [Debian-med-packaging] python-biopython 1.87+dfsg-3 MIGRATED to
 testing
Message-ID: <E1wfs9s-0073Rs-17@respighi.debian.org>

FYI: The status of the python-biopython source package
in Debian's testing distribution has changed.

  Previous version: 1.87+dfsg-1
  Current version:  1.87+dfsg-3

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From noreply at release.debian.org  Sat Jul  4 05:39:21 2026
From: noreply at release.debian.org (Debian testing watch)
Date: Sat, 04 Jul 2026 04:39:21 +0000
Subject: [Debian-med-packaging] snakemake 7.32.4-12 MIGRATED to testing
Message-ID: <E1wfs9x-0073Z7-0t@respighi.debian.org>

FYI: The status of the snakemake source package
in Debian's testing distribution has changed.

  Previous version: 7.32.4-11
  Current version:  7.32.4-12

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From noreply at release.debian.org  Sat Jul  4 05:39:58 2026
From: noreply at release.debian.org (Debian testing autoremoval watch)
Date: Sat, 04 Jul 2026 04:39:58 +0000
Subject: [Debian-med-packaging] mcaller is marked for autoremoval from
 testing
Message-ID: <E1wfsAY-0073nf-2D@respighi.debian.org>

mcaller 1.0.3+git20210624.b415090-4 is marked for autoremoval from testing on 2026-08-01

It (build-)depends on packages with these RC bugs:
1140283: sphinx-autodoc-typehints: FTBFS: E           AssertionError: assert 'data' == 'class'
 https://bugs.debian.org/1140283
1140748: emboss-doc: does not ship any documentation
 https://bugs.debian.org/1140748



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autoremoval can be found on the wiki: https://wiki.debian.org/Autoremoval

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From noreply at release.debian.org  Sat Jul  4 05:40:12 2026
From: noreply at release.debian.org (Debian testing autoremoval watch)
Date: Sat, 04 Jul 2026 04:40:12 +0000
Subject: [Debian-med-packaging] embassy-domalign is marked for autoremoval
 from testing
Message-ID: <E1wfsAm-0073tT-1C@respighi.debian.org>

embassy-domalign 0.1.660-5 is marked for autoremoval from testing on 2026-08-08

It (build-)depends on packages with these RC bugs:
1140748: emboss-doc: does not ship any documentation
 https://bugs.debian.org/1140748



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From noreply at release.debian.org  Sat Jul  4 05:40:12 2026
From: noreply at release.debian.org (Debian testing autoremoval watch)
Date: Sat, 04 Jul 2026 04:40:12 +0000
Subject: [Debian-med-packaging] emboss-explorer is marked for autoremoval
 from testing
Message-ID: <E1wfsAm-0073tW-1i@respighi.debian.org>

emboss-explorer 2.2.0-12 is marked for autoremoval from testing on 2026-08-08

It (build-)depends on packages with these RC bugs:
1140748: emboss-doc: does not ship any documentation
 https://bugs.debian.org/1140748



For more information on the autoremoval process, including hints to prevent
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From noreply at release.debian.org  Sat Jul  4 05:40:12 2026
From: noreply at release.debian.org (Debian testing autoremoval watch)
Date: Sat, 04 Jul 2026 04:40:12 +0000
Subject: [Debian-med-packaging] embassy-domainatrix is marked for
 autoremoval from testing
Message-ID: <E1wfsAm-0073tQ-0g@respighi.debian.org>

embassy-domainatrix 0.1.660-5 is marked for autoremoval from testing on 2026-08-08

It (build-)depends on packages with these RC bugs:
1140748: emboss-doc: does not ship any documentation
 https://bugs.debian.org/1140748



For more information on the autoremoval process, including hints to prevent
autoremoval can be found on the wiki: https://wiki.debian.org/Autoremoval

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From noreply at release.debian.org  Sat Jul  4 05:40:12 2026
From: noreply at release.debian.org (Debian testing autoremoval watch)
Date: Sat, 04 Jul 2026 04:40:12 +0000
Subject: [Debian-med-packaging] embassy-domsearch is marked for autoremoval
 from testing
Message-ID: <E1wfsAm-0073ta-2E@respighi.debian.org>

embassy-domsearch 1:0.1.660-4 is marked for autoremoval from testing on 2026-08-08

It (build-)depends on packages with these RC bugs:
1140748: emboss-doc: does not ship any documentation
 https://bugs.debian.org/1140748



For more information on the autoremoval process, including hints to prevent
autoremoval can be found on the wiki: https://wiki.debian.org/Autoremoval

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From noreply at release.debian.org  Sat Jul  4 05:40:12 2026
From: noreply at release.debian.org (Debian testing autoremoval watch)
Date: Sat, 04 Jul 2026 04:40:12 +0000
Subject: [Debian-med-packaging] emboss is marked for autoremoval from testing
Message-ID: <E1wfsAm-0073td-2M@respighi.debian.org>

emboss 6.6.0+dfsg-18 is marked for autoremoval from testing on 2026-08-08

It is affected by these RC bugs:
1140748: emboss-doc: does not ship any documentation
 https://bugs.debian.org/1140748



For more information on the autoremoval process, including hints to prevent
autoremoval can be found on the wiki: https://wiki.debian.org/Autoremoval

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From carnil at debian.org  Sat Jul  4 08:31:45 2026
From: carnil at debian.org (Salvatore Bonaccorso)
Date: Sat, 04 Jul 2026 09:31:45 +0200
Subject: [Debian-med-packaging] Bug#1141411: dcmtk: CVE-2026-50003
 CVE-2026-50254 CVE-2026-35505 CVE-2026-52868 CVE-2026-44628
Message-ID: <178315030571.2392867.10796344197332545941.reportbug@eldamar.lan>

Source: dcmtk
Version: 3.7.0+really3.7.0-6
Severity: grave
Tags: security upstream
Justification: user security hole
X-Debbugs-Cc: carnil at debian.org, Debian Security Team <team at security.debian.org>

Hi,

The following vulnerabilities were published for dcmtk.

I still filled this as RC level, but I'm unsure if they really would
warrant a security advisory, in particular the critical rated one
needs to connect to a malicious DICOM server.

CVE-2026-50003[0]:
| A malicious or compromised server can make a DCMTK client using bit-
| preserving C-GET storage mode write files outside the chosen output
| directory, using both relative (../) paths and absolute paths.


CVE-2026-50254[1]:
| An unauthenticated remote attacker can repeatedly send a single
| crafted connection request to leak memory. Against storescp in its
| default single-process mode, memory grows quickly and the service is
| eventually killed, after which it stops accepting connections until
| an operator restarts it.


CVE-2026-35505[2]:
| An unauthenticated remote attacker can repeatedly send crafted
| connection requests to leak memory. In single-process deployments
| the memory grows until the service is killed and the port stops
| responding until restart.


CVE-2026-52868[3]:
| An unauthenticated attacker can read worklist records from a
| directory outside the intended per-AE worklist storage area. In a
| multi-area deployment, this can cross departmental or clinic data
| separation.


CVE-2026-44628[4]:
| An unauthenticated attacker can crash the worklist server with a
| single crafted query when the server has a valid Called AE Title /
| storage directory, the expected lockfile, and at least one matching
| worklist record.


If you fix the vulnerabilities please also make sure to include the
CVE (Common Vulnerabilities & Exposures) ids in your changelog entry.

For further information see:

[0] https://security-tracker.debian.org/tracker/CVE-2026-50003
    https://www.cve.org/CVERecord?id=CVE-2026-50003
[1] https://security-tracker.debian.org/tracker/CVE-2026-50254
    https://www.cve.org/CVERecord?id=CVE-2026-50254
[2] https://security-tracker.debian.org/tracker/CVE-2026-35505
    https://www.cve.org/CVERecord?id=CVE-2026-35505
[3] https://security-tracker.debian.org/tracker/CVE-2026-52868
    https://www.cve.org/CVERecord?id=CVE-2026-52868
[4] https://security-tracker.debian.org/tracker/CVE-2026-44628
    https://www.cve.org/CVERecord?id=CVE-2026-44628
[5] https://www.openwall.com/lists/oss-security/2026/07/01/1

Please adjust the affected versions in the BTS as needed.

Regards,
Salvatore


From ftpmaster at ftp-master.debian.org  Sat Jul  4 17:24:43 2026
From: ftpmaster at ftp-master.debian.org (Debian FTP Masters)
Date: Sat, 04 Jul 2026 16:24:43 +0000
Subject: [Debian-med-packaging] Processing of
 python-ptufile_2026.6.6-1_source.changes
Message-ID: <E1wg3AZ-007PQk-1M@usper.debian.org>

python-ptufile_2026.6.6-1_source.changes uploaded successfully to localhost
along with the files:
  python-ptufile_2026.6.6-1.dsc
  python-ptufile_2026.6.6.orig.tar.gz
  python-ptufile_2026.6.6-1.debian.tar.xz
  python-ptufile_2026.6.6-1_amd64.buildinfo

Greetings,

	Your Debian queue daemon (running on host usper.debian.org)


From ftpmaster at ftp-master.debian.org  Sat Jul  4 17:34:10 2026
From: ftpmaster at ftp-master.debian.org (Debian FTP Masters)
Date: Sat, 04 Jul 2026 16:34:10 +0000
Subject: [Debian-med-packaging] python-ptufile_2026.6.6-1_source.changes
 ACCEPTED into unstable
Message-ID: <E1wg3Ji-0000000A0Tm-2NeV@fasolo.debian.org>

Thank you for your contribution to Debian.



Accepted:

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Date: Sat, 04 Jul 2026 11:32:31 +0200
Source: python-ptufile
Architecture: source
Version: 2026.6.6-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Changed-By: Karsten Sch?ke <karsten.schoeke at geobasis-bb.de>
Changes:
 python-ptufile (2026.6.6-1) unstable; urgency=medium
 .
   * New upstream version 2026.6.6
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From noreply at release.debian.org  Sun Jul  5 05:39:12 2026
From: noreply at release.debian.org (Debian testing autoremoval watch)
Date: Sun, 05 Jul 2026 04:39:12 +0000
Subject: [Debian-med-packaging] snakemake is marked for autoremoval from
 testing
Message-ID: <E1wgEdM-000Yp4-1R@respighi.debian.org>

snakemake 7.32.4-12 is marked for autoremoval from testing on 2026-08-08

It (build-)depends on packages with these RC bugs:
1140748: emboss-doc: does not ship any documentation
 https://bugs.debian.org/1140748
1140859: flask: autopkgtest regression with pytest 9.1
 https://bugs.debian.org/1140859
1140869: pytest-rerunfailures: autopkgtest regression with pytest 9.1
 https://bugs.debian.org/1140869
1140876: python-inline-snapshot: autopkgtest regression with pytest 9.1
 https://bugs.debian.org/1140876



For more information on the autoremoval process, including hints to prevent
autoremoval can be found on the wiki: https://wiki.debian.org/Autoremoval

This mail is generated by:
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Autoremoval data is generated by:
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From noreply at release.debian.org  Sun Jul  5 05:39:12 2026
From: noreply at release.debian.org (Debian testing autoremoval watch)
Date: Sun, 05 Jul 2026 04:39:12 +0000
Subject: [Debian-med-packaging] python-biopython is marked for autoremoval
 from testing
Message-ID: <E1wgEdM-000Ypk-1Z@respighi.debian.org>

python-biopython 1.87+dfsg-3 is marked for autoremoval from testing on 2026-08-08

It (build-)depends on packages with these RC bugs:
1140748: emboss-doc: does not ship any documentation
 https://bugs.debian.org/1140748
1140859: flask: autopkgtest regression with pytest 9.1
 https://bugs.debian.org/1140859
1140876: python-inline-snapshot: autopkgtest regression with pytest 9.1
 https://bugs.debian.org/1140876



For more information on the autoremoval process, including hints to prevent
autoremoval can be found on the wiki: https://wiki.debian.org/Autoremoval

This mail is generated by:
https://salsa.debian.org/release-team/release-tools/-/blob/master/mailer/mail_autoremovals.pl

Autoremoval data is generated by:
https://salsa.debian.org/qa/udd/-/blob/master/udd/testing_autoremovals_gatherer.pl


From owner at bugs.debian.org  Sun Jul  5 11:13:02 2026
From: owner at bugs.debian.org (Debian Bug Tracking System)
Date: Sun, 05 Jul 2026 10:13:02 +0000
Subject: [Debian-med-packaging] Processed: tagging 1130357
References: <1783246207-741-bts-bunk@debian.org>
Message-ID: <handler.s.C.1783246209659693.transcript@bugs.debian.org>

Processing commands for control at bugs.debian.org:

> # test passes with 2.8.0
> tags 1130357 + fixed-upstream
Bug #1130357 [src:sniffles] sniffles: autopkgtest failure with Python 3.14
Bug #1131798 [src:sniffles] sniffles: autopkgtest failure with Python 3.14
Added tag(s) fixed-upstream.
Added tag(s) fixed-upstream.
> thanks
Stopping processing here.

Please contact me if you need assistance.
-- 
1130357: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1130357
1131798: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1131798
Debian Bug Tracking System
Contact owner at bugs.debian.org with problems


From hrivnakmatus72 at gmail.com  Sun Jul  5 13:23:37 2026
From: hrivnakmatus72 at gmail.com (=?UTF-8?Q?Entsch=C3=A4digung_der_Vereinten_Nationen?=)
Date: Sun, 5 Jul 2026 13:23:37 +0100
Subject: [Debian-med-packaging] =?utf-8?q?Va=C5=A1a_platb?=
Message-ID: <CAMoT9_EbGd6GHr-iN2o1KBbyUrQRNCNYsEFpjxAUU6jMuq8nJw@mail.gmail.com>

Program OSN pre ludsk? os?dlenie a od?kodnenie,
Budovanie kapac?t a zlep?ovanie v?konu humanit?rnej sebapodpory

Pozor pr?jemca,

Chceme v?s upozornit, ?e m?te od Organiz?cie Spojen?ch n?rodov vyplaten?
kompenz?ciu vo v??ke 2,5 mili?na EUR, a t?to celkov? sumu sme ?spe?ne
previedli na bankomatov? kartu na va?e meno a bola schv?len? a ulo?en?
spolocnosti ADL-Express Delivery Company na okam?it? dorucenie k v?m,

pros?m, kontaktujte ADL-Express pre okam?it? dorucenie na va?u dom?cu
adresu, inform?cie o ADL-Express Delivery Company s? uveden? ni??ie,

Dr. Patrick Mupenda
adl.logisticsco at gmail.com
adl.express at yahoo.com
+229-01918-206-65

Budete ich kontaktovat s va?imi ?pln?mi inform?ciami, kam bude va?a
bankomatov? karta dorucen?, suma na va?ej bankomatovej karte je 2,5 mili?na
EUR a v?? PIN k?d je (8116).

Cel? meno
Mobiln? c?slo
Krajina p?vodu
Va?a aktu?lna dorucovacia adresa
VA?A identifikacn? karta/vodicsk? preukaz

Pozn?mka: Mus?te zaplatit poplatok za dorucenie.

S pozdravom,
P?n Douglas Green
V?bor pre vyrovnanie dlhu ?stredia OSN
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From ftpmaster at ftp-master.debian.org  Sun Jul  5 19:14:21 2026
From: ftpmaster at ftp-master.debian.org (Debian FTP Masters)
Date: Sun, 05 Jul 2026 18:14:21 +0000
Subject: [Debian-med-packaging] Processing of
 libzeem_2.1.2+dfsg-5_source.changes
Message-ID: <E1wgRMD-000yZi-2u@usper.debian.org>

libzeem_2.1.2+dfsg-5_source.changes uploaded successfully to localhost
along with the files:
  libzeem_2.1.2+dfsg-5.dsc
  libzeem_2.1.2+dfsg.orig.tar.xz
  libzeem_2.1.2+dfsg-5.debian.tar.xz
  libzeem_2.1.2+dfsg-5_amd64.buildinfo

Greetings,

	Your Debian queue daemon (running on host usper.debian.org)


From ftpmaster at ftp-master.debian.org  Sun Jul  5 19:34:23 2026
From: ftpmaster at ftp-master.debian.org (Debian FTP Masters)
Date: Sun, 05 Jul 2026 18:34:23 +0000
Subject: [Debian-med-packaging] libzeem_2.1.2+dfsg-5_source.changes REJECTED
Message-ID: <E1wgRfb-0000000F86s-2WZS@fasolo.debian.org>



ACL dm: not allowed to upload source package 'libzeem'



===

Please feel free to respond to this email if you don't understand why
your files were rejected, or if you upload new files which address our
concerns.

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From ftpmaster at ftp-master.debian.org  Sun Jul  5 22:21:18 2026
From: ftpmaster at ftp-master.debian.org (Debian FTP Masters)
Date: Sun, 05 Jul 2026 21:21:18 +0000
Subject: [Debian-med-packaging] Processing of
 ariba_2.14.7+ds-13_source.changes
Message-ID: <E1wgUH8-0016Jq-0w@usper.debian.org>

ariba_2.14.7+ds-13_source.changes uploaded successfully to localhost
along with the files:
  ariba_2.14.7+ds-13.dsc
  ariba_2.14.7+ds-13.debian.tar.xz
  ariba_2.14.7+ds-13_amd64.buildinfo

Greetings,

	Your Debian queue daemon (running on host usper.debian.org)


From ftpmaster at ftp-master.debian.org  Sun Jul  5 22:34:08 2026
From: ftpmaster at ftp-master.debian.org (Debian FTP Masters)
Date: Sun, 05 Jul 2026 21:34:08 +0000
Subject: [Debian-med-packaging] ariba_2.14.7+ds-13_source.changes ACCEPTED
 into unstable
Message-ID: <E1wgUTY-0000000FnEj-03kY@fasolo.debian.org>

Thank you for your contribution to Debian.



Accepted:

-----BEGIN PGP SIGNED MESSAGE-----
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Format: 1.8
Date: Sun, 05 Jul 2026 23:10:35 +0200
Source: ariba
Architecture: source
Version: 2.14.7+ds-13
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <satta at debian.org>
Closes: 1141163
Changes:
 ariba (2.14.7+ds-13) unstable; urgency=medium
 .
   * Add patch to make code compatible with Python 3.14's multiprocessing.
     (Closes: #1141163)
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From owner at bugs.debian.org  Sun Jul  5 22:37:01 2026
From: owner at bugs.debian.org (Debian Bug Tracking System)
Date: Sun, 05 Jul 2026 21:37:01 +0000
Subject: [Debian-med-packaging] Bug#1141163: marked as done (ariba:
 Autopkgtests fail: The following reads file(s) were not found)
References: <E1wgUTY-0000000FnEr-0POC@fasolo.debian.org>
 <178284155308.510639.17577121055961012459.reportbug@belkar.wrar.name>
Message-ID: <handler.1141163.D1141163.17832872521030852.ackdone@bugs.debian.org>

Your message dated Sun, 05 Jul 2026 21:34:08 +0000
with message-id <E1wgUTY-0000000FnEr-0POC at fasolo.debian.org>
and subject line Bug#1141163: fixed in ariba 2.14.7+ds-13
has caused the Debian Bug report #1141163,
regarding ariba: Autopkgtests fail: The following reads file(s) were not found
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact owner at bugs.debian.org
immediately.)


-- 
1141163: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1141163
Debian Bug Tracking System
Contact owner at bugs.debian.org with problems
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Subject: ariba: Autopkgtests fail: The following reads file(s) were not found
Date: Tue, 30 Jun 2026 22:45:53 +0500
Size: 7325
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From: Debian FTP Masters <ftpmaster at ftp-master.debian.org>
Subject: Bug#1141163: fixed in ariba 2.14.7+ds-13
Date: Sun, 05 Jul 2026 21:34:08 +0000
Size: 6659
URL: <http://alioth-lists.debian.net/pipermail/debian-med-packaging/attachments/20260705/584f7d9e/attachment-0003.eml>

From noreply at release.debian.org  Mon Jul  6 05:39:12 2026
From: noreply at release.debian.org (Debian testing watch)
Date: Mon, 06 Jul 2026 04:39:12 +0000
Subject: [Debian-med-packaging] psychtoolbox-3 3.0.22.2+dfsg-8 MIGRATED to
 testing
Message-ID: <E1wgb6u-001ksO-2a@respighi.debian.org>

FYI: The status of the psychtoolbox-3 source package
in Debian's testing distribution has changed.

  Previous version: 3.0.22.2+dfsg-3
  Current version:  3.0.22.2+dfsg-8

-- 
This email is automatically generated once a day.  As the installation of
new packages into testing happens multiple times a day you will receive
later changes on the next day.
See https://release.debian.org/testing-watch/ for more information.


From noreply at release.debian.org  Mon Jul  6 05:39:21 2026
From: noreply at release.debian.org (Debian testing autoremoval watch)
Date: Mon, 06 Jul 2026 04:39:21 +0000
Subject: [Debian-med-packaging] python-awkward is marked for autoremoval
 from testing
Message-ID: <E1wgb73-001kw9-16@respighi.debian.org>

python-awkward 2.9.0-2 is marked for autoremoval from testing on 2026-08-10

It (build-)depends on packages with these RC bugs:
1140859: flask: autopkgtest regression with pytest 9.1
 https://bugs.debian.org/1140859
1141036: vcr.py: FTBFS: ERROR: Unknown config option: asyncio_default_fixture_loop_scope
 https://bugs.debian.org/1141036



For more information on the autoremoval process, including hints to prevent
autoremoval can be found on the wiki: https://wiki.debian.org/Autoremoval

This mail is generated by:
https://salsa.debian.org/release-team/release-tools/-/blob/master/mailer/mail_autoremovals.pl

Autoremoval data is generated by:
https://salsa.debian.org/qa/udd/-/blob/master/udd/testing_autoremovals_gatherer.pl


From noreply at release.debian.org  Mon Jul  6 05:39:35 2026
From: noreply at release.debian.org (Debian testing autoremoval watch)
Date: Mon, 06 Jul 2026 04:39:35 +0000
Subject: [Debian-med-packaging] atropos is marked for autoremoval from
 testing
Message-ID: <E1wgb7H-001l03-14@respighi.debian.org>

atropos 1.1.32+dfsg-2 is marked for autoremoval from testing on 2026-08-10

It (build-)depends on packages with these RC bugs:
1140859: flask: autopkgtest regression with pytest 9.1
 https://bugs.debian.org/1140859
1141036: vcr.py: FTBFS: ERROR: Unknown config option: asyncio_default_fixture_loop_scope
 https://bugs.debian.org/1141036



For more information on the autoremoval process, including hints to prevent
autoremoval can be found on the wiki: https://wiki.debian.org/Autoremoval

This mail is generated by:
https://salsa.debian.org/release-team/release-tools/-/blob/master/mailer/mail_autoremovals.pl

Autoremoval data is generated by:
https://salsa.debian.org/qa/udd/-/blob/master/udd/testing_autoremovals_gatherer.pl


From noreply at release.debian.org  Mon Jul  6 05:39:49 2026
From: noreply at release.debian.org (Debian testing autoremoval watch)
Date: Mon, 06 Jul 2026 04:39:49 +0000
Subject: [Debian-med-packaging] openslide-python is marked for autoremoval
 from testing
Message-ID: <E1wgb7V-001l4A-0W@respighi.debian.org>

openslide-python 1.4.6-2 is marked for autoremoval from testing on 2026-08-10

It (build-)depends on packages with these RC bugs:
1140859: flask: autopkgtest regression with pytest 9.1
 https://bugs.debian.org/1140859



For more information on the autoremoval process, including hints to prevent
autoremoval can be found on the wiki: https://wiki.debian.org/Autoremoval

This mail is generated by:
https://salsa.debian.org/release-team/release-tools/-/blob/master/mailer/mail_autoremovals.pl

Autoremoval data is generated by:
https://salsa.debian.org/qa/udd/-/blob/master/udd/testing_autoremovals_gatherer.pl


From ftpmaster at ftp-master.debian.org  Mon Jul  6 10:06:47 2026
From: ftpmaster at ftp-master.debian.org (Debian FTP Masters)
Date: Mon, 06 Jul 2026 09:06:47 +0000
Subject: [Debian-med-packaging] Processing of
 libzeem_2.1.2+dfsg-4_source.changes
Message-ID: <E1wgfHr-001ZSc-2d@usper.debian.org>

libzeem_2.1.2+dfsg-4_source.changes uploaded successfully to localhost
along with the files:
  libzeem_2.1.2+dfsg-4.dsc
  libzeem_2.1.2+dfsg-4.debian.tar.xz
  libzeem_2.1.2+dfsg-4_amd64.buildinfo

Greetings,

	Your Debian queue daemon (running on host usper.debian.org)


From ftpmaster at ftp-master.debian.org  Mon Jul  6 10:19:35 2026
From: ftpmaster at ftp-master.debian.org (Debian FTP Masters)
Date: Mon, 06 Jul 2026 09:19:35 +0000
Subject: [Debian-med-packaging] libzeem_2.1.2+dfsg-4_source.changes ACCEPTED
 into unstable
Message-ID: <E1wgfUF-00000000ZG4-2lIK@fasolo.debian.org>

Thank you for your contribution to Debian.



Accepted:

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Hash: SHA512

Format: 1.8
Date: Mon, 06 Jul 2026 10:52:15 +0200
Source: libzeem
Architecture: source
Version: 2.1.2+dfsg-4
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Changed-By: Andreas Tille <tille at debian.org>
Changes:
 libzeem (2.1.2+dfsg-4) unstable; urgency=medium
 .
   * Team upload.
   * Debian Med team maintenance since package is in team repository
   * d/watch:
      - version=5
      - Point watch file to new location
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From owner at bugs.debian.org  Mon Jul  6 14:07:03 2026
From: owner at bugs.debian.org (Debian Bug Tracking System)
Date: Mon, 06 Jul 2026 13:07:03 +0000
Subject: [Debian-med-packaging] Processed: Bug#1120528 marked as pending in
 deblur
References: <6a4ba7dcc5580_57615e0995d8@godard.mail>
 <176288620440.3526.10734934723692734665@c390fbd1ac84>
Message-ID: <handler.s.U1120528.17833430721548025.transcript@bugs.debian.org>

Processing control commands:

> tag -1 pending
Bug #1120528 [src:deblur] deblur: please make the build reproducible
Added tag(s) pending.

-- 
1120528: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1120528
Debian Bug Tracking System
Contact owner at bugs.debian.org with problems


From noreply at salsa.debian.org  Mon Jul  6 14:04:28 2026
From: noreply at salsa.debian.org (Andreas Tille)
Date: Mon, 06 Jul 2026 13:04:28 +0000
Subject: [Debian-med-packaging] Bug#1120528: marked as pending in deblur
References: <176288620440.3526.10734934723692734665@c390fbd1ac84>
Message-ID: <6a4ba7dcc5580_57615e0995d8@godard.mail>

Control: tag -1 pending

Hello,

Bug #1120528 in deblur reported by you has been fixed in the
Git repository and is awaiting an upload. You can see the commit
message below and you can check the diff of the fix at:

https://salsa.debian.org/med-team/deblur/-/commit/9b03adeb8f25250c25965c68a977b950c6594568

------------------------------------------------------------------------
Make build reproducible Closes: #1120528
------------------------------------------------------------------------

(this message was generated automatically)
-- 
Greetings

https://bugs.debian.org/1120528


From ftpmaster at ftp-master.debian.org  Mon Jul  6 14:14:12 2026
From: ftpmaster at ftp-master.debian.org (Debian FTP Masters)
Date: Mon, 06 Jul 2026 13:14:12 +0000
Subject: [Debian-med-packaging] Processing of deblur_1.1.1-5_source.changes
Message-ID: <E1wgj9I-001kBq-2s@usper.debian.org>

deblur_1.1.1-5_source.changes uploaded successfully to localhost
along with the files:
  deblur_1.1.1-5.dsc
  deblur_1.1.1-5.debian.tar.xz
  deblur_1.1.1-5_amd64.buildinfo

Greetings,

	Your Debian queue daemon (running on host usper.debian.org)


From ftpmaster at ftp-master.debian.org  Mon Jul  6 14:18:41 2026
From: ftpmaster at ftp-master.debian.org (Debian FTP Masters)
Date: Mon, 06 Jul 2026 13:18:41 +0000
Subject: [Debian-med-packaging] deblur_1.1.1-5_source.changes ACCEPTED into
 unstable
Message-ID: <E1wgjDd-00000001BRX-2Eld@fasolo.debian.org>

Thank you for your contribution to Debian.



Accepted:

-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 1.8
Date: Mon, 06 Jul 2026 15:00:09 +0200
Source: deblur
Architecture: source
Version: 1.1.1-5
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Changed-By: Andreas Tille <tille at debian.org>
Closes: 1120528
Changes:
 deblur (1.1.1-5) unstable; urgency=medium
 .
   * Team upload.
 .
   [ Andreas Tille ]
   * d/watch: version=5
   * Standards-Version: 4.7.4 (routine-update)
   * Reflow Uploaders field (cme)
   * Remove Priority field (cme)
   * Drop 'Rules-Requires-Root: no' from d/control (routine-update)
   * d/copyright: Use proper SPDX name
 .
   [ Chris Lamb ]
   * Make build reproducible
     Closes: #1120528
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From owner at bugs.debian.org  Mon Jul  6 14:21:03 2026
From: owner at bugs.debian.org (Debian Bug Tracking System)
Date: Mon, 06 Jul 2026 13:21:03 +0000
Subject: [Debian-med-packaging] Bug#1120528: marked as done (deblur: please
 make the build reproducible)
References: <E1wgjDd-00000001BRf-2ZAJ@fasolo.debian.org>
 <176288620440.3526.10734934723692734665@c390fbd1ac84>
Message-ID: <handler.1120528.D1120528.17833439241555210.ackdone@bugs.debian.org>

Your message dated Mon, 06 Jul 2026 13:18:41 +0000
with message-id <E1wgjDd-00000001BRf-2ZAJ at fasolo.debian.org>
and subject line Bug#1120528: fixed in deblur 1.1.1-5
has caused the Debian Bug report #1120528,
regarding deblur: please make the build reproducible
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact owner at bugs.debian.org
immediately.)


-- 
1120528: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1120528
Debian Bug Tracking System
Contact owner at bugs.debian.org with problems
-------------- next part --------------
An embedded message was scrubbed...
From: "Chris Lamb" <lamby at debian.org>
Subject: deblur: please make the build reproducible
Date: Tue, 11 Nov 2025 10:37:53 -0800
Size: 5533
URL: <http://alioth-lists.debian.net/pipermail/debian-med-packaging/attachments/20260706/6c1f2ea8/attachment-0002.eml>
-------------- next part --------------
An embedded message was scrubbed...
From: Debian FTP Masters <ftpmaster at ftp-master.debian.org>
Subject: Bug#1120528: fixed in deblur 1.1.1-5
Date: Mon, 06 Jul 2026 13:18:41 +0000
Size: 6822
URL: <http://alioth-lists.debian.net/pipermail/debian-med-packaging/attachments/20260706/6c1f2ea8/attachment-0003.eml>

From lamby at debian.org  Mon Jul  6 17:15:33 2026
From: lamby at debian.org (Chris Lamb)
Date: Mon, 06 Jul 2026 09:15:33 -0700
Subject: [Debian-med-packaging] Bug#1141582: libslow5lib: please make the
 build reproducible
Message-ID: <178335447102.7554.10862453304235996252@7c00e2b3e8f0>

Source: libslow5lib
Version: 1.4.0+dfsg-2
Severity: wishlist
Tags: patch
User: reproducible-builds at lists.alioth.debian.org
Usertags: nocheck
X-Debbugs-Cc: reproducible-bugs at lists.alioth.debian.org

Hi,

Whilst working on the Reproducible Builds effort [0], we noticed that
libslow5lib could not be built reproducibly.

This is because the testsuite generates some (temporary?) files that
are not cleaned up and end up in the binary packge, meaning that if
the tests are skipped the package will be "missing" those files and
will be unreproducible.

Patch attached.

 [0] https://reproducible-builds.org/


Regards,

-- 
      ,''`.
     : :'  :     Chris Lamb
     `. `'`      lamby at debian.org / chris-lamb.co.uk
       `-
-------------- next part --------------
--- a/debian/rules	2026-07-06 08:47:47.507094165 -0700
--- b/debian/rules	2026-07-06 09:07:00.764017108 -0700
@@ -63,5 +63,6 @@
 
 override_dh_installexamples:
 	dh_installexamples
+	rm -fv examples/example_write* examples/*.idx
 	dh_installexamples -ppython3-slow5 python/example.py
 	dh_installexamples -ppython3-slow5 examples/*

From owner at bugs.debian.org  Mon Jul  6 21:45:02 2026
From: owner at bugs.debian.org (Debian Bug Tracking System)
Date: Mon, 06 Jul 2026 20:45:02 +0000
Subject: [Debian-med-packaging] Processed: Bug#1083322 marked as pending in
 brian
References: <6a4c135a2ab06_57a1004219a4@godard.mail>
 <E1swenw-00Dg1e-V3@paradis.debian.org>
Message-ID: <handler.s.U1083322.17833705901824598.transcript@bugs.debian.org>

Processing control commands:

> tag -1 pending
Bug #1083322 [src:brian] brian: (build-)depends on deprecated module python3-pkg-resources
Added tag(s) pending.

-- 
1083322: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1083322
Debian Bug Tracking System
Contact owner at bugs.debian.org with problems


From noreply at salsa.debian.org  Mon Jul  6 21:43:06 2026
From: noreply at salsa.debian.org (Andreas Tille)
Date: Mon, 06 Jul 2026 20:43:06 +0000
Subject: [Debian-med-packaging] Bug#1083322: marked as pending in brian
References: <E1swenw-00Dg1e-V3@paradis.debian.org>
Message-ID: <6a4c135a2ab06_57a1004219a4@godard.mail>

Control: tag -1 pending

Hello,

Bug #1083322 in brian reported by you has been fixed in the
Git repository and is awaiting an upload. You can see the commit
message below and you can check the diff of the fix at:

https://salsa.debian.org/med-team/brian/-/commit/a8256ff8cc7f9698394c292a38a04715a9fab1bd

------------------------------------------------------------------------
Replace deprecated pkg_resources with packaging also in .codemeta/create_codemeta.py Closes: #1083322
------------------------------------------------------------------------

(this message was generated automatically)
-- 
Greetings

https://bugs.debian.org/1083322


From ftpmaster at ftp-master.debian.org  Mon Jul  6 21:54:59 2026
From: ftpmaster at ftp-master.debian.org (Debian FTP Masters)
Date: Mon, 06 Jul 2026 20:54:59 +0000
Subject: [Debian-med-packaging] Processing of brian_2.10.1-2_source.changes
Message-ID: <E1wgqLD-0024K2-1b@usper.debian.org>

brian_2.10.1-2_source.changes uploaded successfully to localhost
along with the files:
  brian_2.10.1-2.dsc
  brian_2.10.1-2.debian.tar.xz
  brian_2.10.1-2_amd64.buildinfo

Greetings,

	Your Debian queue daemon (running on host usper.debian.org)


From ftpmaster at ftp-master.debian.org  Mon Jul  6 22:05:33 2026
From: ftpmaster at ftp-master.debian.org (Debian FTP Masters)
Date: Mon, 06 Jul 2026 21:05:33 +0000
Subject: [Debian-med-packaging] brian_2.10.1-2_source.changes ACCEPTED into
 unstable
Message-ID: <E1wgqVR-00000002oRk-1FBs@fasolo.debian.org>

Thank you for your contribution to Debian.



Accepted:

-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 1.8
Date: Mon, 06 Jul 2026 20:45:11 +0200
Source: brian
Architecture: source
Version: 2.10.1-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Changed-By: Andreas Tille <tille at debian.org>
Closes: 1083322
Changes:
 brian (2.10.1-2) unstable; urgency=medium
 .
   * Team upload.
   * Packaging update (routine-update)
   * debputy lint --auto-fix (routine-update)
   * Configure lrc by adding debian/lrc.conf
   * Replace deprecated pkg_resources with packaging also in
     .codemeta/create_codemeta.py
     Closes: #1083322
Checksums-Sha1:
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From owner at bugs.debian.org  Mon Jul  6 22:07:02 2026
From: owner at bugs.debian.org (Debian Bug Tracking System)
Date: Mon, 06 Jul 2026 21:07:02 +0000
Subject: [Debian-med-packaging] Bug#1083322: marked as done (brian:
 (build-)depends on deprecated module python3-pkg-resources)
References: <E1wgqVR-00000002oRt-1Xxj@fasolo.debian.org>
 <E1swenw-00Dg1e-V3@paradis.debian.org>
Message-ID: <handler.1083322.D1083322.17833719351835800.ackdone@bugs.debian.org>

Your message dated Mon, 06 Jul 2026 21:05:33 +0000
with message-id <E1wgqVR-00000002oRt-1Xxj at fasolo.debian.org>
and subject line Bug#1083322: fixed in brian 2.10.1-2
has caused the Debian Bug report #1083322,
regarding brian: (build-)depends on deprecated module python3-pkg-resources
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact owner at bugs.debian.org
immediately.)


-- 
1083322: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1083322
Debian Bug Tracking System
Contact owner at bugs.debian.org with problems
-------------- next part --------------
An embedded message was scrubbed...
From: Matthias Klose <doko at debian.org>
Subject: brian: (build-)depends on deprecated module python3-pkg-resources
Date: Fri, 04 Oct 2024 09:40:56 +0000
Size: 3893
URL: <http://alioth-lists.debian.net/pipermail/debian-med-packaging/attachments/20260706/fac5384f/attachment-0002.eml>
-------------- next part --------------
An embedded message was scrubbed...
From: Debian FTP Masters <ftpmaster at ftp-master.debian.org>
Subject: Bug#1083322: fixed in brian 2.10.1-2
Date: Mon, 06 Jul 2026 21:05:33 +0000
Size: 6719
URL: <http://alioth-lists.debian.net/pipermail/debian-med-packaging/attachments/20260706/fac5384f/attachment-0003.eml>

From noreply at release.debian.org  Tue Jul  7 05:39:03 2026
From: noreply at release.debian.org (Debian testing autoremoval watch)
Date: Tue, 07 Jul 2026 04:39:03 +0000
Subject: [Debian-med-packaging] metastudent is marked for autoremoval from
 testing
Message-ID: <E1wgxaJ-002xjG-30@respighi.debian.org>

metastudent 2.0.1-10 is marked for autoremoval from testing on 2026-07-17

It is affected by these RC bugs:
1131795: metastudent: autopkgtest failure with Python 3.14
 https://bugs.debian.org/1131795



For more information on the autoremoval process, including hints to prevent
autoremoval can be found on the wiki: https://wiki.debian.org/Autoremoval

This mail is generated by:
https://salsa.debian.org/release-team/release-tools/-/blob/master/mailer/mail_autoremovals.pl

Autoremoval data is generated by:
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From noreply at release.debian.org  Tue Jul  7 05:39:17 2026
From: noreply at release.debian.org (Debian testing watch)
Date: Tue, 07 Jul 2026 04:39:17 +0000
Subject: [Debian-med-packaging] python-ptufile 2026.6.6-1 MIGRATED to testing
Message-ID: <E1wgxaX-002xvb-2o@respighi.debian.org>

FYI: The status of the python-ptufile source package
in Debian's testing distribution has changed.

  Previous version: 2026.3.21-1
  Current version:  2026.6.6-1

-- 
This email is automatically generated once a day.  As the installation of
new packages into testing happens multiple times a day you will receive
later changes on the next day.
See https://release.debian.org/testing-watch/ for more information.


From noreply at release.debian.org  Tue Jul  7 05:39:16 2026
From: noreply at release.debian.org (Debian testing watch)
Date: Tue, 07 Jul 2026 04:39:16 +0000
Subject: [Debian-med-packaging] parallel 20240222+ds-4 MIGRATED to testing
Message-ID: <E1wgxaW-002xsm-0e@respighi.debian.org>

FYI: The status of the parallel source package
in Debian's testing distribution has changed.

  Previous version: 20240222+ds-3
  Current version:  20240222+ds-4

-- 
This email is automatically generated once a day.  As the installation of
new packages into testing happens multiple times a day you will receive
later changes on the next day.
See https://release.debian.org/testing-watch/ for more information.


From noreply at release.debian.org  Tue Jul  7 05:39:17 2026
From: noreply at release.debian.org (Debian testing watch)
Date: Tue, 07 Jul 2026 04:39:17 +0000
Subject: [Debian-med-packaging] python-mne 1.12.1-1 MIGRATED to testing
Message-ID: <E1wgxaX-002xvE-26@respighi.debian.org>

FYI: The status of the python-mne source package
in Debian's testing distribution has changed.

  Previous version: (not in testing)
  Current version:  1.12.1-1

-- 
This email is automatically generated once a day.  As the installation of
new packages into testing happens multiple times a day you will receive
later changes on the next day.
See https://release.debian.org/testing-watch/ for more information.


From noreply at release.debian.org  Tue Jul  7 05:39:23 2026
From: noreply at release.debian.org (Debian testing watch)
Date: Tue, 07 Jul 2026 04:39:23 +0000
Subject: [Debian-med-packaging] tnseq-transit 3.3.12-1 MIGRATED to testing
Message-ID: <E1wgxad-002y5p-3A@respighi.debian.org>

FYI: The status of the tnseq-transit source package
in Debian's testing distribution has changed.

  Previous version: (not in testing)
  Current version:  3.3.12-1

-- 
This email is automatically generated once a day.  As the installation of
new packages into testing happens multiple times a day you will receive
later changes on the next day.
See https://release.debian.org/testing-watch/ for more information.


From noreply at release.debian.org  Tue Jul  7 05:39:26 2026
From: noreply at release.debian.org (Debian testing autoremoval watch)
Date: Tue, 07 Jul 2026 04:39:26 +0000
Subject: [Debian-med-packaging] psychtoolbox-3 is marked for autoremoval
 from testing
Message-ID: <E1wgxag-002y80-1M@respighi.debian.org>

psychtoolbox-3 3.0.22.2+dfsg-8 is marked for autoremoval from testing on 2026-07-30

It (build-)depends on packages with these RC bugs:
1139536: hypre: FTBFS: HYPRE_utilities.h:20:10: fatal error: mpi.h: No such file or directory
 https://bugs.debian.org/1139536
1140262: mold: FTBFS: 37: mold: error: out/test/x86_64/arch-x86_64-reloc-overflow/a.o:(.data): relocation R_X86_64_16 against foo out of range: 2109976 is not in [0, 65536)
 https://bugs.debian.org/1140262



For more information on the autoremoval process, including hints to prevent
autoremoval can be found on the wiki: https://wiki.debian.org/Autoremoval

This mail is generated by:
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Autoremoval data is generated by:
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From noreply at release.debian.org  Tue Jul  7 05:39:30 2026
From: noreply at release.debian.org (Debian testing autoremoval watch)
Date: Tue, 07 Jul 2026 04:39:30 +0000
Subject: [Debian-med-packaging] roary is marked for autoremoval from testing
Message-ID: <E1wgxak-002y8a-0x@respighi.debian.org>

roary 3.13.0+dfsg-2 is marked for autoremoval from testing on 2026-08-04

It (build-)depends on packages with these RC bugs:
1140262: mold: FTBFS: 37: mold: error: out/test/x86_64/arch-x86_64-reloc-overflow/a.o:(.data): relocation R_X86_64_16 against foo out of range: 2109976 is not in [0, 65536)
 https://bugs.debian.org/1140262



For more information on the autoremoval process, including hints to prevent
autoremoval can be found on the wiki: https://wiki.debian.org/Autoremoval

This mail is generated by:
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Autoremoval data is generated by:
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From noreply at release.debian.org  Tue Jul  7 05:39:32 2026
From: noreply at release.debian.org (Debian testing autoremoval watch)
Date: Tue, 07 Jul 2026 04:39:32 +0000
Subject: [Debian-med-packaging] plasmidid is marked for autoremoval from
 testing
Message-ID: <E1wgxam-002y92-1N@respighi.debian.org>

plasmidid 1.6.5+dfsg-2 is marked for autoremoval from testing on 2026-08-04

It (build-)depends on packages with these RC bugs:
1140262: mold: FTBFS: 37: mold: error: out/test/x86_64/arch-x86_64-reloc-overflow/a.o:(.data): relocation R_X86_64_16 against foo out of range: 2109976 is not in [0, 65536)
 https://bugs.debian.org/1140262



For more information on the autoremoval process, including hints to prevent
autoremoval can be found on the wiki: https://wiki.debian.org/Autoremoval

This mail is generated by:
https://salsa.debian.org/release-team/release-tools/-/blob/master/mailer/mail_autoremovals.pl

Autoremoval data is generated by:
https://salsa.debian.org/qa/udd/-/blob/master/udd/testing_autoremovals_gatherer.pl


From noreply at release.debian.org  Tue Jul  7 05:39:31 2026
From: noreply at release.debian.org (Debian testing autoremoval watch)
Date: Tue, 07 Jul 2026 04:39:31 +0000
Subject: [Debian-med-packaging] prokka is marked for autoremoval from testing
Message-ID: <E1wgxal-002y8y-3A@respighi.debian.org>

prokka 1.14.6+dfsg-6 is marked for autoremoval from testing on 2026-08-04

It (build-)depends on packages with these RC bugs:
1140262: mold: FTBFS: 37: mold: error: out/test/x86_64/arch-x86_64-reloc-overflow/a.o:(.data): relocation R_X86_64_16 against foo out of range: 2109976 is not in [0, 65536)
 https://bugs.debian.org/1140262



For more information on the autoremoval process, including hints to prevent
autoremoval can be found on the wiki: https://wiki.debian.org/Autoremoval

This mail is generated by:
https://salsa.debian.org/release-team/release-tools/-/blob/master/mailer/mail_autoremovals.pl

Autoremoval data is generated by:
https://salsa.debian.org/qa/udd/-/blob/master/udd/testing_autoremovals_gatherer.pl


From noreply at release.debian.org  Tue Jul  7 05:39:35 2026
From: noreply at release.debian.org (Debian testing autoremoval watch)
Date: Tue, 07 Jul 2026 04:39:35 +0000
Subject: [Debian-med-packaging] parallel is marked for autoremoval from
 testing
Message-ID: <E1wgxap-002y9Z-0t@respighi.debian.org>

parallel 20240222+ds-4 is marked for autoremoval from testing on 2026-08-04

It (build-)depends on packages with these RC bugs:
1140262: mold: FTBFS: 37: mold: error: out/test/x86_64/arch-x86_64-reloc-overflow/a.o:(.data): relocation R_X86_64_16 against foo out of range: 2109976 is not in [0, 65536)
 https://bugs.debian.org/1140262



For more information on the autoremoval process, including hints to prevent
autoremoval can be found on the wiki: https://wiki.debian.org/Autoremoval

This mail is generated by:
https://salsa.debian.org/release-team/release-tools/-/blob/master/mailer/mail_autoremovals.pl

Autoremoval data is generated by:
https://salsa.debian.org/qa/udd/-/blob/master/udd/testing_autoremovals_gatherer.pl


From noreply at release.debian.org  Tue Jul  7 05:39:41 2026
From: noreply at release.debian.org (Debian testing autoremoval watch)
Date: Tue, 07 Jul 2026 04:39:41 +0000
Subject: [Debian-med-packaging] iva is marked for autoremoval from testing
Message-ID: <E1wgxav-002yAh-39@respighi.debian.org>

iva 1.0.11+ds-6 is marked for autoremoval from testing on 2026-08-10

It (build-)depends on packages with these RC bugs:
1140859: flask: autopkgtest regression with pytest 9.1
 https://bugs.debian.org/1140859
1140876: python-inline-snapshot: autopkgtest regression with pytest 9.1
 https://bugs.debian.org/1140876
1140980: httpx: FTBFS: E       assert [('uvicorn.ac...1.1 200 OK"')] == [('httpx', 20...1.1 200 OK"')]
 https://bugs.debian.org/1140980
1141036: vcr.py: FTBFS: ERROR: Unknown config option: asyncio_default_fixture_loop_scope
 https://bugs.debian.org/1141036



For more information on the autoremoval process, including hints to prevent
autoremoval can be found on the wiki: https://wiki.debian.org/Autoremoval

This mail is generated by:
https://salsa.debian.org/release-team/release-tools/-/blob/master/mailer/mail_autoremovals.pl

Autoremoval data is generated by:
https://salsa.debian.org/qa/udd/-/blob/master/udd/testing_autoremovals_gatherer.pl


From rubencaldas at gesloures.pt  Tue Jul  7 11:18:59 2026
From: rubencaldas at gesloures.pt (rubencaldas at gesloures.pt)
Date: Tue, 07 Jul 2026 11:18:59 +0100
Subject: [Debian-med-packaging] =?utf-8?q?Ich_habe_mich_entschieden=2C_Ih?=
 =?utf-8?q?nen_4=2E800=2E000=2C00_=E2=82=AC__zukommen_zu_lassen=2E?=
Message-ID: <20260707111859.Horde.bxyZOJr4vCYtG9B9veB4zoK@mail.sooma.com>

Hallo,

ich bin Maria Elisabeth, eine deutsche Gesch?ftsfrau und Investorin.  
Nachdem ich meinen Mann im Krankenhaus verloren habe, bat er mich,  
4.800.000,00 ? an eine wohlt?tige Person wie Sie zu spenden. Ich habe  
bereits 35 Prozent meines Verm?gens f?r wohlt?tige Zwecke gespendet  
und mir au?erdem vorgenommen, die restlichen 35 Prozent im Jahr 2026  
an Einzelpersonen zu spenden. Ich habe mich entschieden, Ihnen  
4.800.000,00 ? zukommen zu lassen. Wenn Sie an meiner Spende  
interessiert sind, kontaktieren Sie mich bitte f?r weitere  
Informationen.

Mehr ?ber mich erfahren Sie unter dem folgenden Link:

Sie k?nnen hier nachsehen:  
https://en.wikipedia.org/wiki/Maria-Elisabeth_Schaeffler

============================================
Mit freundlichen Gr??en,
Vorsitzender einer Supermarktkette.
Frau Maria Elisabeth.
E-Mail: mariaelisabethschaeffer at outlook.com



From ftpmaster at ftp-master.debian.org  Tue Jul  7 14:15:06 2026
From: ftpmaster at ftp-master.debian.org (Debian FTP Masters)
Date: Tue, 07 Jul 2026 13:15:06 +0000
Subject: [Debian-med-packaging] Processing of
 imbalanced-learn_0.14.2-1_source.changes
Message-ID: <E1wh5di-002iKB-0J@usper.debian.org>

imbalanced-learn_0.14.2-1_source.changes uploaded successfully to localhost
along with the files:
  imbalanced-learn_0.14.2-1.dsc
  imbalanced-learn_0.14.2.orig.tar.gz
  imbalanced-learn_0.14.2-1.debian.tar.xz
  imbalanced-learn_0.14.2-1_source.buildinfo

Greetings,

	Your Debian queue daemon (running on host usper.debian.org)


From ftpmaster at ftp-master.debian.org  Tue Jul  7 14:20:15 2026
From: ftpmaster at ftp-master.debian.org (Debian FTP Masters)
Date: Tue, 07 Jul 2026 13:20:15 +0000
Subject: [Debian-med-packaging] imbalanced-learn_0.14.2-1_source.changes
 ACCEPTED into unstable
Message-ID: <E1wh5ih-00000005fbq-3vt4@fasolo.debian.org>

Thank you for your contribution to Debian.



Accepted:

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Source: imbalanced-learn
Architecture: source
Version: 0.14.2-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Changed-By: Andreas Tille <tille at debian.org>
Closes: 1140982
Changes:
 imbalanced-learn (0.14.2-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
   * Work around a DeprecationWarning in scikit-learn
     Closes: #1140982
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From owner at bugs.debian.org  Tue Jul  7 14:23:02 2026
From: owner at bugs.debian.org (Debian Bug Tracking System)
Date: Tue, 07 Jul 2026 13:23:02 +0000
Subject: [Debian-med-packaging] Bug#1140982: marked as done
 (imbalanced-learn: FTBFS: ERROR collecting imblearn/tests/test_common.py)
References: <E1wh5ii-00000005fbz-03ax@fasolo.debian.org>
 <E1wdwTD-00BAaV-2c@paradis.debian.org>
Message-ID: <handler.1140982.D1140982.17834304182407302.ackdone@bugs.debian.org>

Your message dated Tue, 07 Jul 2026 13:20:16 +0000
with message-id <E1wh5ii-00000005fbz-03ax at fasolo.debian.org>
and subject line Bug#1140982: fixed in imbalanced-learn 0.14.2-1
has caused the Debian Bug report #1140982,
regarding imbalanced-learn: FTBFS: ERROR collecting imblearn/tests/test_common.py
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact owner at bugs.debian.org
immediately.)


-- 
1140982: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1140982
Debian Bug Tracking System
Contact owner at bugs.debian.org with problems
-------------- next part --------------
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From: Santiago Vila <sanvila at debian.org>
Subject: imbalanced-learn: FTBFS: ERROR collecting imblearn/tests/test_common.py
Date: Sun, 28 Jun 2026 20:51:15 +0000
Size: 24590
URL: <http://alioth-lists.debian.net/pipermail/debian-med-packaging/attachments/20260707/7897bec4/attachment-0002.eml>
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From: Debian FTP Masters <ftpmaster at ftp-master.debian.org>
Subject: Bug#1140982: fixed in imbalanced-learn 0.14.2-1
Date: Tue, 07 Jul 2026 13:20:16 +0000
Size: 7108
URL: <http://alioth-lists.debian.net/pipermail/debian-med-packaging/attachments/20260707/7897bec4/attachment-0003.eml>

From noreply at salsa.debian.org  Tue Jul  7 18:47:10 2026
From: noreply at salsa.debian.org (=?UTF-8?B?w4l0aWVubmUgTW9sbGllcg==?=)
Date: Tue, 07 Jul 2026 17:47:10 +0000
Subject: [Debian-med-packaging] Bug#1141411: marked as pending in dcmtk
References: <178315030571.2392867.10796344197332545941.reportbug@eldamar.lan>
Message-ID: <6a4d3b9e77125_57aff0234f0@godard.mail>

Control: tag -1 pending

Hello,

Bug #1141411 in dcmtk reported by you has been fixed in the
Git repository and is awaiting an upload. You can see the commit
message below and you can check the diff of the fix at:

https://salsa.debian.org/med-team/dcmtk/-/commit/1013f32ba294fa35717e4af11fe013c674a7c618

------------------------------------------------------------------------
d/patches/CVE-2026-*.patch: new security patches.

This change includes a patch queue addressing CVE-2026-50003,
CVE-2026-50254, CVE-2026-35505, CVE-2026-52868 and CVE-2026-44628.
The latter CVE-2026-44628 is divided into two patches to match
upstream's commits.  These changes fix a range of issues, including
risks of path traversals, denial of services and information leaks.

Closes: #1141411
------------------------------------------------------------------------

(this message was generated automatically)
-- 
Greetings

https://bugs.debian.org/1141411


From owner at bugs.debian.org  Tue Jul  7 18:49:01 2026
From: owner at bugs.debian.org (Debian Bug Tracking System)
Date: Tue, 07 Jul 2026 17:49:01 +0000
Subject: [Debian-med-packaging] Processed: Bug#1141411 marked as pending in
 dcmtk
References: <6a4d3b9e77125_57aff0234f0@godard.mail>
 <178315030571.2392867.10796344197332545941.reportbug@eldamar.lan>
Message-ID: <handler.s.U1141411.17834464342571193.transcript@bugs.debian.org>

Processing control commands:

> tag -1 pending
Bug #1141411 [src:dcmtk] dcmtk: CVE-2026-50003 CVE-2026-50254 CVE-2026-35505 CVE-2026-52868 CVE-2026-44628
Added tag(s) pending.

-- 
1141411: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1141411
Debian Bug Tracking System
Contact owner at bugs.debian.org with problems


From emollier at debian.org  Tue Jul  7 18:51:54 2026
From: emollier at debian.org (=?utf-8?Q?=C3=89tienne?= Mollier)
Date: Tue, 7 Jul 2026 19:51:54 +0200
Subject: [Debian-med-packaging] Bug#1141411: Bug#1141411: dcmtk:
 CVE-2026-50003 CVE-2026-50254 CVE-2026-35505 CVE-2026-52868 CVE-2026-44628
In-Reply-To: <178315030571.2392867.10796344197332545941.reportbug@eldamar.lan>
References: <178315030571.2392867.10796344197332545941.reportbug@eldamar.lan>
 <178315030571.2392867.10796344197332545941.reportbug@eldamar.lan>
Message-ID: <ak08uhX4h8HHTYtw@emlwks999.eu>

Hi Salvatore,

Salvatore Bonaccorso, on 2026-07-04:
> I still filled this as RC level, but I'm unsure if they really would
> warrant a security advisory, in particular the critical rated one
> needs to connect to a malicious DICOM server.

Thank you for your assessment, I have reviewed the changes, they
are numerous, and I believe more prudent to have them lingering
a bit in stable-pu.  I'll coordinate with Stable Release
Managers for the publication of mitigations applicable to the
older dcmtk version in stable.

Have a nice day,  :)
-- 
  .''`.  ?tienne Mollier <emollier at debian.org>
 : :' :  pgp: 8f91 b227 c7d6 f2b1 948c  8236 793c f67e 8f0d 11da
 `. `'   sent from /dev/pts/2, please excuse my verbosity
   `-
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From ftpmaster at ftp-master.debian.org  Tue Jul  7 18:57:47 2026
From: ftpmaster at ftp-master.debian.org (Debian FTP Masters)
Date: Tue, 07 Jul 2026 17:57:47 +0000
Subject: [Debian-med-packaging] Processing of
 dcmtk_3.7.0+really3.7.0-7_source.changes
Message-ID: <E1whA3H-002uS8-2m@usper.debian.org>

dcmtk_3.7.0+really3.7.0-7_source.changes uploaded successfully to localhost
along with the files:
  dcmtk_3.7.0+really3.7.0-7.dsc
  dcmtk_3.7.0+really3.7.0-7.debian.tar.xz

Greetings,

	Your Debian queue daemon (running on host usper.debian.org)


From ftpmaster at ftp-master.debian.org  Tue Jul  7 19:04:20 2026
From: ftpmaster at ftp-master.debian.org (Debian FTP Masters)
Date: Tue, 07 Jul 2026 18:04:20 +0000
Subject: [Debian-med-packaging] dcmtk_3.7.0+really3.7.0-7_source.changes
 ACCEPTED into unstable
Message-ID: <E1whA9c-00000006eLV-32Ew@fasolo.debian.org>

Thank you for your contribution to Debian.



Accepted:

-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 1.8
Date: Mon, 06 Jul 2026 22:39:03 +0200
Source: dcmtk
Architecture: source
Version: 3.7.0+really3.7.0-7
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Changed-By: ?tienne Mollier <emollier at debian.org>
Closes: 1141411
Changes:
 dcmtk (3.7.0+really3.7.0-7) unstable; urgency=medium
 .
   * d/patches/CVE-2026-*.patch: new security patches.
     This change includes a patch queue addressing CVE-2026-50003,
     CVE-2026-50254, CVE-2026-35505, CVE-2026-52868 and CVE-2026-44628.
     The latter CVE-2026-44628 is divided into two patches to match
     upstream's commits.  These changes fix a range of issues, including
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     (Closes: #1141411)
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From owner at bugs.debian.org  Tue Jul  7 19:07:02 2026
From: owner at bugs.debian.org (Debian Bug Tracking System)
Date: Tue, 07 Jul 2026 18:07:02 +0000
Subject: [Debian-med-packaging] Bug#1141411: marked as done (dcmtk:
 CVE-2026-50003 CVE-2026-50254 CVE-2026-35505 CVE-2026-52868 CVE-2026-44628)
References: <E1whA9c-00000006eLf-3MIN@fasolo.debian.org>
 <178315030571.2392867.10796344197332545941.reportbug@eldamar.lan>
Message-ID: <handler.1141411.D1141411.17834474652581107.ackdone@bugs.debian.org>

Your message dated Tue, 07 Jul 2026 18:04:20 +0000
with message-id <E1whA9c-00000006eLf-3MIN at fasolo.debian.org>
and subject line Bug#1141411: fixed in dcmtk 3.7.0+really3.7.0-7
has caused the Debian Bug report #1141411,
regarding dcmtk: CVE-2026-50003 CVE-2026-50254 CVE-2026-35505 CVE-2026-52868 CVE-2026-44628
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact owner at bugs.debian.org
immediately.)


-- 
1141411: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1141411
Debian Bug Tracking System
Contact owner at bugs.debian.org with problems
-------------- next part --------------
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From: Salvatore Bonaccorso <carnil at debian.org>
Subject: dcmtk: CVE-2026-50003 CVE-2026-50254 CVE-2026-35505 CVE-2026-52868 CVE-2026-44628
Date: Sat, 04 Jul 2026 09:31:45 +0200
Size: 3971
URL: <http://alioth-lists.debian.net/pipermail/debian-med-packaging/attachments/20260707/f968fbb4/attachment-0002.eml>
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From: Debian FTP Masters <ftpmaster at ftp-master.debian.org>
Subject: Bug#1141411: fixed in dcmtk 3.7.0+really3.7.0-7
Date: Tue, 07 Jul 2026 18:04:20 +0000
Size: 6859
URL: <http://alioth-lists.debian.net/pipermail/debian-med-packaging/attachments/20260707/f968fbb4/attachment-0003.eml>

From owner at bugs.debian.org  Tue Jul  7 19:15:03 2026
From: owner at bugs.debian.org (Debian Bug Tracking System)
Date: Tue, 07 Jul 2026 18:15:03 +0000
Subject: [Debian-med-packaging] Processed: Re: Bug#1141411: dcmtk:
 CVE-2026-50003 CVE-2026-50254 CVE-2026-35505 CVE-2026-52868 CVE-2026-44628
References: <ak1BkT16_Pd1Tb0d@emlwks999.eu>
 <178315030571.2392867.10796344197332545941.reportbug@eldamar.lan>
Message-ID: <handler.s.B1141411.17834479572585285.transcript@bugs.debian.org>

Processing control commands:

> found -1 3.6.9-5
Bug #1141411 {Done: ?tienne Mollier <emollier at debian.org>} [src:dcmtk] dcmtk: CVE-2026-50003 CVE-2026-50254 CVE-2026-35505 CVE-2026-52868 CVE-2026-44628
Marked as found in versions dcmtk/3.6.9-5.
> found -1 3.6.9-5+deb13u2
Bug #1141411 {Done: ?tienne Mollier <emollier at debian.org>} [src:dcmtk] dcmtk: CVE-2026-50003 CVE-2026-50254 CVE-2026-35505 CVE-2026-52868 CVE-2026-44628
Marked as found in versions dcmtk/3.6.9-5+deb13u2.
> tags -1 + trixie
Bug #1141411 {Done: ?tienne Mollier <emollier at debian.org>} [src:dcmtk] dcmtk: CVE-2026-50003 CVE-2026-50254 CVE-2026-35505 CVE-2026-52868 CVE-2026-44628
Added tag(s) trixie.

-- 
1141411: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1141411
Debian Bug Tracking System
Contact owner at bugs.debian.org with problems


From emollier at debian.org  Tue Jul  7 19:12:34 2026
From: emollier at debian.org (=?utf-8?Q?=C3=89tienne?= Mollier)
Date: Tue, 7 Jul 2026 20:12:34 +0200
Subject: [Debian-med-packaging] Bug#1141411: Bug#1141411: dcmtk:
 CVE-2026-50003 CVE-2026-50254 CVE-2026-35505 CVE-2026-52868 CVE-2026-44628
In-Reply-To: <ak08uhX4h8HHTYtw@emlwks999.eu>
References: <178315030571.2392867.10796344197332545941.reportbug@eldamar.lan>
 <ak08uhX4h8HHTYtw@emlwks999.eu>
 <178315030571.2392867.10796344197332545941.reportbug@eldamar.lan>
Message-ID: <ak1BkT16_Pd1Tb0d@emlwks999.eu>

Control: found -1 3.6.9-5
Control: found -1 3.6.9-5+deb13u2
Control: tags -1 + trixie

All patches applied to dcmtk 3.6.9 with little to no fuzz, which
heavily hints for it being affected by all the security issues
documented in the present bug.

In hope this helps,
-- 
  .''`.  ?tienne Mollier <emollier at debian.org>
 : :' :  pgp: 8f91 b227 c7d6 f2b1 948c  8236 793c f67e 8f0d 11da
 `. `'   sent from /dev/pts/2, please excuse my verbosity
   `-
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From carnil at debian.org  Tue Jul  7 20:35:18 2026
From: carnil at debian.org (Salvatore Bonaccorso)
Date: Tue, 7 Jul 2026 21:35:18 +0200
Subject: [Debian-med-packaging] Bug#1141411: Bug#1141411: dcmtk:
 CVE-2026-50003 CVE-2026-50254 CVE-2026-35505 CVE-2026-52868 CVE-2026-44628
In-Reply-To: <ak08uhX4h8HHTYtw@emlwks999.eu>
References: <178315030571.2392867.10796344197332545941.reportbug@eldamar.lan>
 <178315030571.2392867.10796344197332545941.reportbug@eldamar.lan>
 <ak08uhX4h8HHTYtw@emlwks999.eu>
 <178315030571.2392867.10796344197332545941.reportbug@eldamar.lan>
Message-ID: <ak1U9saiExS2UEvS@eldamar.lan>

Hi ?tienne,

On Tue, Jul 07, 2026 at 07:51:54PM +0200, ?tienne Mollier wrote:
> Hi Salvatore,
> 
> Salvatore Bonaccorso, on 2026-07-04:
> > I still filled this as RC level, but I'm unsure if they really would
> > warrant a security advisory, in particular the critical rated one
> > needs to connect to a malicious DICOM server.
> 
> Thank you for your assessment, I have reviewed the changes, they
> are numerous, and I believe more prudent to have them lingering
> a bit in stable-pu.  I'll coordinate with Stable Release
> Managers for the publication of mitigations applicable to the
> older dcmtk version in stable.

Thanks for your judgment. I will mark those issues as no-dsa in the
security-tracker for trixie, I would say LTS should at least mark them
postponed then for now until upper suites are fixed and enough
confident.

Sorry for having filled one single bug covering multiple issues this
time, but we have to batch them bit for making sure things are fixed
in unstable. It would be nicer to have individual one so version
trackiing can properly set up.

Regards,
Salvatore


From ftpmaster at ftp-master.debian.org  Tue Jul  7 20:58:50 2026
From: ftpmaster at ftp-master.debian.org (Debian FTP Masters)
Date: Tue, 07 Jul 2026 19:58:50 +0000
Subject: [Debian-med-packaging] Processing of sniffles_2.8.0-1_source.changes
Message-ID: <E1whBwQ-002ziM-0Y@usper.debian.org>

sniffles_2.8.0-1_source.changes uploaded successfully to localhost
along with the files:
  sniffles_2.8.0-1.dsc
  sniffles_2.8.0.orig.tar.xz
  sniffles_2.8.0-1.debian.tar.xz
  sniffles_2.8.0-1_amd64.buildinfo

Greetings,

	Your Debian queue daemon (running on host usper.debian.org)


From ftpmaster at ftp-master.debian.org  Tue Jul  7 21:21:46 2026
From: ftpmaster at ftp-master.debian.org (Debian FTP Masters)
Date: Tue, 07 Jul 2026 20:21:46 +0000
Subject: [Debian-med-packaging] sniffles_2.8.0-1_source.changes ACCEPTED
 into unstable
Message-ID: <E1whCIc-00000007GJv-13ww@fasolo.debian.org>

Thank you for your contribution to Debian.



Accepted:

-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 1.8
Date: Tue, 07 Jul 2026 21:39:23 +0200
Source: sniffles
Architecture: source
Version: 2.8.0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Changed-By: Andreas Tille <tille at debian.org>
Closes: 1130357
Changes:
 sniffles (2.8.0-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
     Closes: #1130357
   * Standards-Version: 4.7.4 (routine-update)
   * Reflow Uploaders field (cme)
   * Remove Priority field (cme)
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Files:
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 e29118db96969f2c879d3607d53d47d0 4701728 science optional sniffles_2.8.0.orig.tar.xz
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From owner at bugs.debian.org  Tue Jul  7 21:23:03 2026
From: owner at bugs.debian.org (Debian Bug Tracking System)
Date: Tue, 07 Jul 2026 20:23:03 +0000
Subject: [Debian-med-packaging] Bug#1130357: marked as done (sniffles:
 autopkgtest failure with Python 3.14)
References: <E1whCIc-00000007GK4-1OqR@fasolo.debian.org>
 <CAM8zJQuBs1fsxRnEBV6knCPag-LSbRLOrYQjuJZzJxjoMnU76Q@mail.gmail.com>
Message-ID: <handler.1130357.D1130357.17834557082653202.ackdone@bugs.debian.org>

Your message dated Tue, 07 Jul 2026 20:21:46 +0000
with message-id <E1whCIc-00000007GK4-1OqR at fasolo.debian.org>
and subject line Bug#1130357: fixed in sniffles 2.8.0-1
has caused the Debian Bug report #1130357,
regarding sniffles: autopkgtest failure with Python 3.14
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact owner at bugs.debian.org
immediately.)


-- 
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Debian Bug Tracking System
Contact owner at bugs.debian.org with problems
-------------- next part --------------
An embedded message was scrubbed...
From: Graham Inggs <ginggs at debian.org>
Subject: sniffles: autopkgtest failure with Python 3.14
Date: Wed, 11 Mar 2026 16:05:51 -0100
Size: 5863
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-------------- next part --------------
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From: Debian FTP Masters <ftpmaster at ftp-master.debian.org>
Subject: Bug#1130357: fixed in sniffles 2.8.0-1
Date: Tue, 07 Jul 2026 20:21:46 +0000
Size: 7122
URL: <http://alioth-lists.debian.net/pipermail/debian-med-packaging/attachments/20260707/a6cff0b9/attachment-0003.eml>

From owner at bugs.debian.org  Tue Jul  7 21:23:03 2026
From: owner at bugs.debian.org (Debian Bug Tracking System)
Date: Tue, 07 Jul 2026 20:23:03 +0000
Subject: [Debian-med-packaging] Bug#1131798: marked as done (sniffles:
 autopkgtest failure with Python 3.14)
References: <E1whCIc-00000007GK4-1OqR@fasolo.debian.org>
 <CAM8zJQsterArmuH6usmG3UhbC2aBBU2QLzESCMrJmMpwyDewnA@mail.gmail.com>
Message-ID: <handler.1131798.D1130357.17834557082653202.ackdone@bugs.debian.org>

Your message dated Tue, 07 Jul 2026 20:21:46 +0000
with message-id <E1whCIc-00000007GK4-1OqR at fasolo.debian.org>
and subject line Bug#1130357: fixed in sniffles 2.8.0-1
has caused the Debian Bug report #1130357,
regarding sniffles: autopkgtest failure with Python 3.14
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact owner at bugs.debian.org
immediately.)


-- 
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Debian Bug Tracking System
Contact owner at bugs.debian.org with problems
-------------- next part --------------
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Subject: sniffles: autopkgtest failure with Python 3.14
Date: Tue, 24 Mar 2026 15:53:52 -0100
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From: Debian FTP Masters <ftpmaster at ftp-master.debian.org>
Subject: Bug#1130357: fixed in sniffles 2.8.0-1
Date: Tue, 07 Jul 2026 20:21:46 +0000
Size: 7122
URL: <http://alioth-lists.debian.net/pipermail/debian-med-packaging/attachments/20260707/226db7b2/attachment-0001.eml>

From emollier at debian.org  Tue Jul  7 22:20:29 2026
From: emollier at debian.org (=?utf-8?Q?=C3=89tienne?= Mollier)
Date: Tue, 7 Jul 2026 23:20:29 +0200
Subject: [Debian-med-packaging] Bug#1141411: Bug#1141411: dcmtk:
 CVE-2026-50003 CVE-2026-50254 CVE-2026-35505 CVE-2026-52868 CVE-2026-44628
In-Reply-To: <ak1U9saiExS2UEvS@eldamar.lan>
References: <178315030571.2392867.10796344197332545941.reportbug@eldamar.lan>
 <178315030571.2392867.10796344197332545941.reportbug@eldamar.lan>
 <ak08uhX4h8HHTYtw@emlwks999.eu> <ak1U9saiExS2UEvS@eldamar.lan>
 <178315030571.2392867.10796344197332545941.reportbug@eldamar.lan>
Message-ID: <ak1tnJnTBZud4QsA@emlwks999.eu>

Hi Salvatore,

Salvatore Bonaccorso, on 2026-07-07:
> Thanks for your judgment. I will mark those issues as no-dsa in the
> security-tracker for trixie, I would say LTS should at least mark them
> postponed then for now until upper suites are fixed and enough
> confident.

Acknowledged, it sounds good to me.

> Sorry for having filled one single bug covering multiple issues this
> time, but we have to batch them bit for making sure things are fixed
> in unstable. It would be nicer to have individual one so version
> trackiing can properly set up.

No worries, in this case the batch of CVEs did not interfere
with the triage, as far as I could witness.  Thanks for taking
the time to coordinate publication of security patches!

Have a nice day,  :)
-- 
  .''`.  ?tienne Mollier <emollier at debian.org>
 : :' :  pgp: 8f91 b227 c7d6 f2b1 948c  8236 793c f67e 8f0d 11da
 `. `'   sent from /dev/pts/2, please excuse my verbosity
   `-
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From noreply at release.debian.org  Wed Jul  8 05:39:06 2026
From: noreply at release.debian.org (Debian testing autoremoval watch)
Date: Wed, 08 Jul 2026 04:39:06 +0000
Subject: [Debian-med-packaging] terraphast is marked for autoremoval from
 testing
Message-ID: <E1whK3u-004AG3-1D@respighi.debian.org>

terraphast 0.1.0+dfsg-1 is marked for autoremoval from testing on 2026-07-08

It is affected by these RC bugs:
1139550: terraphast: FTBFS: The following tests FAILED: 1 - unittests (Subprocess aborted)
 https://bugs.debian.org/1139550



For more information on the autoremoval process, including hints to prevent
autoremoval can be found on the wiki: https://wiki.debian.org/Autoremoval

This mail is generated by:
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Autoremoval data is generated by:
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From noreply at release.debian.org  Wed Jul  8 05:39:09 2026
From: noreply at release.debian.org (Debian testing autoremoval watch)
Date: Wed, 08 Jul 2026 04:39:09 +0000
Subject: [Debian-med-packaging] bart-view is marked for autoremoval from
 testing
Message-ID: <E1whK3x-004AGI-0w@respighi.debian.org>

bart-view 0.3.00-1 is marked for autoremoval from testing on 2026-07-15

It is affected by these RC bugs:
1139466: bart-view: FTBFS: /usr/include/bart/misc/opts.h:191:82: error: initialization of 'int *' from incompatible pointer type 'long int *' [-Wincompatible-pointer-types]
 https://bugs.debian.org/1139466



For more information on the autoremoval process, including hints to prevent
autoremoval can be found on the wiki: https://wiki.debian.org/Autoremoval

This mail is generated by:
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From noreply at release.debian.org  Wed Jul  8 05:39:09 2026
From: noreply at release.debian.org (Debian testing watch)
Date: Wed, 08 Jul 2026 04:39:09 +0000
Subject: [Debian-med-packaging] ariba 2.14.7+ds-13 MIGRATED to testing
Message-ID: <E1whK3x-004AGs-1y@respighi.debian.org>

FYI: The status of the ariba source package
in Debian's testing distribution has changed.

  Previous version: 2.14.7+ds-12
  Current version:  2.14.7+ds-13

-- 
This email is automatically generated once a day.  As the installation of
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From noreply at release.debian.org  Wed Jul  8 05:39:12 2026
From: noreply at release.debian.org (Debian testing watch)
Date: Wed, 08 Jul 2026 04:39:12 +0000
Subject: [Debian-med-packaging] libzeem 2.1.2+dfsg-4 MIGRATED to testing
Message-ID: <E1whK40-004AL7-1V@respighi.debian.org>

FYI: The status of the libzeem source package
in Debian's testing distribution has changed.

  Previous version: 2.1.2+dfsg-3
  Current version:  2.1.2+dfsg-4

-- 
This email is automatically generated once a day.  As the installation of
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From noreply at release.debian.org  Wed Jul  8 05:39:10 2026
From: noreply at release.debian.org (Debian testing watch)
Date: Wed, 08 Jul 2026 04:39:10 +0000
Subject: [Debian-med-packaging] gwyddion 3.11-1 MIGRATED to testing
Message-ID: <E1whK3y-004AIJ-2H@respighi.debian.org>

FYI: The status of the gwyddion source package
in Debian's testing distribution has changed.

  Previous version: 3.10-6
  Current version:  3.11-1

-- 
This email is automatically generated once a day.  As the installation of
new packages into testing happens multiple times a day you will receive
later changes on the next day.
See https://release.debian.org/testing-watch/ for more information.


From noreply at release.debian.org  Wed Jul  8 05:39:12 2026
From: noreply at release.debian.org (Debian testing autoremoval watch)
Date: Wed, 08 Jul 2026 04:39:12 +0000
Subject: [Debian-med-packaging] python-mne is marked for autoremoval from
 testing
Message-ID: <E1whK40-004ALB-1x@respighi.debian.org>

python-mne 1.12.1-1 is marked for autoremoval from testing on 2026-07-18

It (build-)depends on packages with these RC bugs:
1138811: python-pyvista: fails to migrate to testing for too long
 https://bugs.debian.org/1138811
1139536: hypre: FTBFS: HYPRE_utilities.h:20:10: fatal error: mpi.h: No such file or directory
 https://bugs.debian.org/1139536
1140876: python-inline-snapshot: autopkgtest regression with pytest 9.1
 https://bugs.debian.org/1140876
1140980: httpx: FTBFS: E       assert [('uvicorn.ac...1.1 200 OK"')] == [('httpx', 20...1.1 200 OK"')]
 https://bugs.debian.org/1140980
1141036: vcr.py: FTBFS: ERROR: Unknown config option: asyncio_default_fixture_loop_scope
 https://bugs.debian.org/1141036



For more information on the autoremoval process, including hints to prevent
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This mail is generated by:
https://salsa.debian.org/release-team/release-tools/-/blob/master/mailer/mail_autoremovals.pl

Autoremoval data is generated by:
https://salsa.debian.org/qa/udd/-/blob/master/udd/testing_autoremovals_gatherer.pl


From noreply at release.debian.org  Wed Jul  8 05:39:53 2026
From: noreply at release.debian.org (Debian testing autoremoval watch)
Date: Wed, 08 Jul 2026 04:39:53 +0000
Subject: [Debian-med-packaging] python-questplus is marked for autoremoval
 from testing
Message-ID: <E1whK4f-004AUX-1q@respighi.debian.org>

python-questplus 2023.1-5 is marked for autoremoval from testing on 2026-07-27

It (build-)depends on packages with these RC bugs:
1106105: dask.distributed: flaky autopkgtest on ppc64el
 https://bugs.debian.org/1106105
1125022: dask.distributed: autopkgtest failure with Python 3.14
 https://bugs.debian.org/1125022
1125023: dask: autopkgtest failure with Python 3.14
 https://bugs.debian.org/1125023
1126730: dask.distributed: CVE-2026-23528
 https://bugs.debian.org/1126730
1131056: dask: flox: autopkgtest regression with NumPy 2.4
 https://bugs.debian.org/1131056
1131082: dask: satpy: autopkgtest regression with NumPy 2.4
 https://bugs.debian.org/1131082
1131087: dask: trollimage: autopkgtest regression with NumPy 2.4
 https://bugs.debian.org/1131087
1136870: dask: python-polsarpro: FTBFS: E           ValueError: `dtype` inference failed in `map_blocks`.
 https://bugs.debian.org/1136870
1139200: dask.distributed: autopkgtest regression with NumPy 2.4
 https://bugs.debian.org/1139200
1139201: dask: flox: autopkgtest regression with NumPy 2.4
 https://bugs.debian.org/1139201
1139202: dask: satpy: autopkgtest regression with NumPy 2.4
 https://bugs.debian.org/1139202
1139203: dask: trollimage: autopkgtest regression with NumPy 2.4
 https://bugs.debian.org/1139203
1140714: dask.distributed: FTBFS: fixture 'loop' not found
 https://bugs.debian.org/1140714
1140876: python-inline-snapshot: autopkgtest regression with pytest 9.1
 https://bugs.debian.org/1140876
1140980: httpx: FTBFS: E       assert [('uvicorn.ac...1.1 200 OK"')] == [('httpx', 20...1.1 200 OK"')]
 https://bugs.debian.org/1140980
1141036: vcr.py: FTBFS: ERROR: Unknown config option: asyncio_default_fixture_loop_scope
 https://bugs.debian.org/1141036



For more information on the autoremoval process, including hints to prevent
autoremoval can be found on the wiki: https://wiki.debian.org/Autoremoval

This mail is generated by:
https://salsa.debian.org/release-team/release-tools/-/blob/master/mailer/mail_autoremovals.pl

Autoremoval data is generated by:
https://salsa.debian.org/qa/udd/-/blob/master/udd/testing_autoremovals_gatherer.pl


From noreply at release.debian.org  Wed Jul  8 05:41:26 2026
From: noreply at release.debian.org (Debian testing autoremoval watch)
Date: Wed, 08 Jul 2026 04:41:26 +0000
Subject: [Debian-med-packaging] python-cobra is marked for autoremoval from
 testing
Message-ID: <E1whK6A-004AYw-2d@respighi.debian.org>

python-cobra 0.31.1-1 is marked for autoremoval from testing on 2026-07-30

It (build-)depends on packages with these RC bugs:
1139536: hypre: FTBFS: HYPRE_utilities.h:20:10: fatal error: mpi.h: No such file or directory
 https://bugs.debian.org/1139536
1140876: python-inline-snapshot: autopkgtest regression with pytest 9.1
 https://bugs.debian.org/1140876
1140980: httpx: FTBFS: E       assert [('uvicorn.ac...1.1 200 OK"')] == [('httpx', 20...1.1 200 OK"')]
 https://bugs.debian.org/1140980
1141036: vcr.py: FTBFS: ERROR: Unknown config option: asyncio_default_fixture_loop_scope
 https://bugs.debian.org/1141036



For more information on the autoremoval process, including hints to prevent
autoremoval can be found on the wiki: https://wiki.debian.org/Autoremoval

This mail is generated by:
https://salsa.debian.org/release-team/release-tools/-/blob/master/mailer/mail_autoremovals.pl

Autoremoval data is generated by:
https://salsa.debian.org/qa/udd/-/blob/master/udd/testing_autoremovals_gatherer.pl


From noreply at release.debian.org  Wed Jul  8 05:41:29 2026
From: noreply at release.debian.org (Debian testing autoremoval watch)
Date: Wed, 08 Jul 2026 04:41:29 +0000
Subject: [Debian-med-packaging] tnseq-transit is marked for autoremoval from
 testing
Message-ID: <E1whK6D-004AZF-13@respighi.debian.org>

tnseq-transit 3.3.12-1 is marked for autoremoval from testing on 2026-07-30

It (build-)depends on packages with these RC bugs:
1139536: hypre: FTBFS: HYPRE_utilities.h:20:10: fatal error: mpi.h: No such file or directory
 https://bugs.debian.org/1139536
1140876: python-inline-snapshot: autopkgtest regression with pytest 9.1
 https://bugs.debian.org/1140876
1140980: httpx: FTBFS: E       assert [('uvicorn.ac...1.1 200 OK"')] == [('httpx', 20...1.1 200 OK"')]
 https://bugs.debian.org/1140980
1141036: vcr.py: FTBFS: ERROR: Unknown config option: asyncio_default_fixture_loop_scope
 https://bugs.debian.org/1141036



For more information on the autoremoval process, including hints to prevent
autoremoval can be found on the wiki: https://wiki.debian.org/Autoremoval

This mail is generated by:
https://salsa.debian.org/release-team/release-tools/-/blob/master/mailer/mail_autoremovals.pl

Autoremoval data is generated by:
https://salsa.debian.org/qa/udd/-/blob/master/udd/testing_autoremovals_gatherer.pl


From noreply at release.debian.org  Wed Jul  8 05:41:30 2026
From: noreply at release.debian.org (Debian testing autoremoval watch)
Date: Wed, 08 Jul 2026 04:41:30 +0000
Subject: [Debian-med-packaging] picard-tools is marked for autoremoval from
 testing
Message-ID: <E1whK6E-004AZZ-1n@respighi.debian.org>

picard-tools 3.4.0+dfsg-1 is marked for autoremoval from testing on 2026-08-01

It is affected by these RC bugs:
1139484: picard-tools: FTBFS: Test: Test method testCleanSam[1](simple_overhang.sam, 99M1S)(picard.sam.CleanSamTest) produced standard out/err: Ignoring SAM validation error: ERROR::CIGAR_MAPS_OFF_REFERENCE:Read name simple_overhang, Read CIGAR M operator maps off end of reference
 https://bugs.debian.org/1139484



For more information on the autoremoval process, including hints to prevent
autoremoval can be found on the wiki: https://wiki.debian.org/Autoremoval

This mail is generated by:
https://salsa.debian.org/release-team/release-tools/-/blob/master/mailer/mail_autoremovals.pl

Autoremoval data is generated by:
https://salsa.debian.org/qa/udd/-/blob/master/udd/testing_autoremovals_gatherer.pl


From noreply at release.debian.org  Wed Jul  8 05:41:30 2026
From: noreply at release.debian.org (Debian testing autoremoval watch)
Date: Wed, 08 Jul 2026 04:41:30 +0000
Subject: [Debian-med-packaging] paleomix is marked for autoremoval from
 testing
Message-ID: <E1whK6E-004AZW-1H@respighi.debian.org>

paleomix 1.3.10-1 is marked for autoremoval from testing on 2026-08-01

It (build-)depends on packages with these RC bugs:
1139484: picard-tools: FTBFS: Test: Test method testCleanSam[1](simple_overhang.sam, 99M1S)(picard.sam.CleanSamTest) produced standard out/err: Ignoring SAM validation error: ERROR::CIGAR_MAPS_OFF_REFERENCE:Read name simple_overhang, Read CIGAR M operator maps off end of reference
 https://bugs.debian.org/1139484



For more information on the autoremoval process, including hints to prevent
autoremoval can be found on the wiki: https://wiki.debian.org/Autoremoval

This mail is generated by:
https://salsa.debian.org/release-team/release-tools/-/blob/master/mailer/mail_autoremovals.pl

Autoremoval data is generated by:
https://salsa.debian.org/qa/udd/-/blob/master/udd/testing_autoremovals_gatherer.pl


From noreply at release.debian.org  Wed Jul  8 05:41:30 2026
From: noreply at release.debian.org (Debian testing autoremoval watch)
Date: Wed, 08 Jul 2026 04:41:30 +0000
Subject: [Debian-med-packaging] drop-seq is marked for autoremoval from
 testing
Message-ID: <E1whK6E-004AZd-2J@respighi.debian.org>

drop-seq 3.0.2+dfsg-2 is marked for autoremoval from testing on 2026-08-01

It (build-)depends on packages with these RC bugs:
1139484: picard-tools: FTBFS: Test: Test method testCleanSam[1](simple_overhang.sam, 99M1S)(picard.sam.CleanSamTest) produced standard out/err: Ignoring SAM validation error: ERROR::CIGAR_MAPS_OFF_REFERENCE:Read name simple_overhang, Read CIGAR M operator maps off end of reference
 https://bugs.debian.org/1139484



For more information on the autoremoval process, including hints to prevent
autoremoval can be found on the wiki: https://wiki.debian.org/Autoremoval

This mail is generated by:
https://salsa.debian.org/release-team/release-tools/-/blob/master/mailer/mail_autoremovals.pl

Autoremoval data is generated by:
https://salsa.debian.org/qa/udd/-/blob/master/udd/testing_autoremovals_gatherer.pl


From noreply at release.debian.org  Wed Jul  8 05:41:30 2026
From: noreply at release.debian.org (Debian testing autoremoval watch)
Date: Wed, 08 Jul 2026 04:41:30 +0000
Subject: [Debian-med-packaging] artemis is marked for autoremoval from
 testing
Message-ID: <E1whK6E-004AZS-0l@respighi.debian.org>

artemis 18.2.0+dfsg-5 is marked for autoremoval from testing on 2026-08-01

It (build-)depends on packages with these RC bugs:
1139484: picard-tools: FTBFS: Test: Test method testCleanSam[1](simple_overhang.sam, 99M1S)(picard.sam.CleanSamTest) produced standard out/err: Ignoring SAM validation error: ERROR::CIGAR_MAPS_OFF_REFERENCE:Read name simple_overhang, Read CIGAR M operator maps off end of reference
 https://bugs.debian.org/1139484
1140748: emboss-doc: does not ship any documentation
 https://bugs.debian.org/1140748



For more information on the autoremoval process, including hints to prevent
autoremoval can be found on the wiki: https://wiki.debian.org/Autoremoval

This mail is generated by:
https://salsa.debian.org/release-team/release-tools/-/blob/master/mailer/mail_autoremovals.pl

Autoremoval data is generated by:
https://salsa.debian.org/qa/udd/-/blob/master/udd/testing_autoremovals_gatherer.pl


From noreply at release.debian.org  Wed Jul  8 05:41:31 2026
From: noreply at release.debian.org (Debian testing autoremoval watch)
Date: Wed, 08 Jul 2026 04:41:31 +0000
Subject: [Debian-med-packaging] libgoby-java is marked for autoremoval from
 testing
Message-ID: <E1whK6F-004AZg-03@respighi.debian.org>

libgoby-java 3.3.1+dfsg2-12 is marked for autoremoval from testing on 2026-08-01

It (build-)depends on packages with these RC bugs:
1139484: picard-tools: FTBFS: Test: Test method testCleanSam[1](simple_overhang.sam, 99M1S)(picard.sam.CleanSamTest) produced standard out/err: Ignoring SAM validation error: ERROR::CIGAR_MAPS_OFF_REFERENCE:Read name simple_overhang, Read CIGAR M operator maps off end of reference
 https://bugs.debian.org/1139484



For more information on the autoremoval process, including hints to prevent
autoremoval can be found on the wiki: https://wiki.debian.org/Autoremoval

This mail is generated by:
https://salsa.debian.org/release-team/release-tools/-/blob/master/mailer/mail_autoremovals.pl

Autoremoval data is generated by:
https://salsa.debian.org/qa/udd/-/blob/master/udd/testing_autoremovals_gatherer.pl


From noreply at release.debian.org  Wed Jul  8 05:41:39 2026
From: noreply at release.debian.org (Debian testing autoremoval watch)
Date: Wed, 08 Jul 2026 04:41:39 +0000
Subject: [Debian-med-packaging] toil is marked for autoremoval from testing
Message-ID: <E1whK6N-004Aav-0y@respighi.debian.org>

toil 9.4.1-1 is marked for autoremoval from testing on 2026-08-10

It is affected by these RC bugs:
1141066: toil: Autopkgtests fail: 'FileID' object is not callable
 https://bugs.debian.org/1141066

It (build-)depends on packages with these RC bugs:
1140876: python-inline-snapshot: autopkgtest regression with pytest 9.1
 https://bugs.debian.org/1140876
1140980: httpx: FTBFS: E       assert [('uvicorn.ac...1.1 200 OK"')] == [('httpx', 20...1.1 200 OK"')]
 https://bugs.debian.org/1140980
1141036: vcr.py: FTBFS: ERROR: Unknown config option: asyncio_default_fixture_loop_scope
 https://bugs.debian.org/1141036



For more information on the autoremoval process, including hints to prevent
autoremoval can be found on the wiki: https://wiki.debian.org/Autoremoval

This mail is generated by:
https://salsa.debian.org/release-team/release-tools/-/blob/master/mailer/mail_autoremovals.pl

Autoremoval data is generated by:
https://salsa.debian.org/qa/udd/-/blob/master/udd/testing_autoremovals_gatherer.pl


From noreply at release.debian.org  Wed Jul  8 05:41:47 2026
From: noreply at release.debian.org (Debian testing autoremoval watch)
Date: Wed, 08 Jul 2026 04:41:47 +0000
Subject: [Debian-med-packaging] biomaj3-core is marked for autoremoval from
 testing
Message-ID: <E1whK6V-004AcC-2S@respighi.debian.org>

biomaj3-core 3.0.28-4 is marked for autoremoval from testing on 2026-08-10

It (build-)depends on packages with these RC bugs:
1140876: python-inline-snapshot: autopkgtest regression with pytest 9.1
 https://bugs.debian.org/1140876
1140980: httpx: FTBFS: E       assert [('uvicorn.ac...1.1 200 OK"')] == [('httpx', 20...1.1 200 OK"')]
 https://bugs.debian.org/1140980
1141036: vcr.py: FTBFS: ERROR: Unknown config option: asyncio_default_fixture_loop_scope
 https://bugs.debian.org/1141036



For more information on the autoremoval process, including hints to prevent
autoremoval can be found on the wiki: https://wiki.debian.org/Autoremoval

This mail is generated by:
https://salsa.debian.org/release-team/release-tools/-/blob/master/mailer/mail_autoremovals.pl

Autoremoval data is generated by:
https://salsa.debian.org/qa/udd/-/blob/master/udd/testing_autoremovals_gatherer.pl


From noreply at release.debian.org  Wed Jul  8 05:41:48 2026
From: noreply at release.debian.org (Debian testing autoremoval watch)
Date: Wed, 08 Jul 2026 04:41:48 +0000
Subject: [Debian-med-packaging] biomaj3-user is marked for autoremoval from
 testing
Message-ID: <E1whK6W-004AcG-0f@respighi.debian.org>

biomaj3-user 3.0.12-2 is marked for autoremoval from testing on 2026-08-10

It (build-)depends on packages with these RC bugs:
1140876: python-inline-snapshot: autopkgtest regression with pytest 9.1
 https://bugs.debian.org/1140876
1140980: httpx: FTBFS: E       assert [('uvicorn.ac...1.1 200 OK"')] == [('httpx', 20...1.1 200 OK"')]
 https://bugs.debian.org/1140980
1141036: vcr.py: FTBFS: ERROR: Unknown config option: asyncio_default_fixture_loop_scope
 https://bugs.debian.org/1141036



For more information on the autoremoval process, including hints to prevent
autoremoval can be found on the wiki: https://wiki.debian.org/Autoremoval

This mail is generated by:
https://salsa.debian.org/release-team/release-tools/-/blob/master/mailer/mail_autoremovals.pl

Autoremoval data is generated by:
https://salsa.debian.org/qa/udd/-/blob/master/udd/testing_autoremovals_gatherer.pl


From noreply at release.debian.org  Wed Jul  8 05:41:47 2026
From: noreply at release.debian.org (Debian testing autoremoval watch)
Date: Wed, 08 Jul 2026 04:41:47 +0000
Subject: [Debian-med-packaging] biomaj3-cli is marked for autoremoval from
 testing
Message-ID: <E1whK6V-004Ac8-11@respighi.debian.org>

biomaj3-cli 3.1.11-5 is marked for autoremoval from testing on 2026-08-10

It (build-)depends on packages with these RC bugs:
1140876: python-inline-snapshot: autopkgtest regression with pytest 9.1
 https://bugs.debian.org/1140876
1140980: httpx: FTBFS: E       assert [('uvicorn.ac...1.1 200 OK"')] == [('httpx', 20...1.1 200 OK"')]
 https://bugs.debian.org/1140980
1141036: vcr.py: FTBFS: ERROR: Unknown config option: asyncio_default_fixture_loop_scope
 https://bugs.debian.org/1141036



For more information on the autoremoval process, including hints to prevent
autoremoval can be found on the wiki: https://wiki.debian.org/Autoremoval

This mail is generated by:
https://salsa.debian.org/release-team/release-tools/-/blob/master/mailer/mail_autoremovals.pl

Autoremoval data is generated by:
https://salsa.debian.org/qa/udd/-/blob/master/udd/testing_autoremovals_gatherer.pl


From noreply at release.debian.org  Wed Jul  8 05:42:18 2026
From: noreply at release.debian.org (Debian testing autoremoval watch)
Date: Wed, 08 Jul 2026 04:42:18 +0000
Subject: [Debian-med-packaging] pybel is marked for autoremoval from testing
Message-ID: <E1whK70-004Agr-1v@respighi.debian.org>

pybel 0.15.5-4 is marked for autoremoval from testing on 2026-08-10

It (build-)depends on packages with these RC bugs:
1140876: python-inline-snapshot: autopkgtest regression with pytest 9.1
 https://bugs.debian.org/1140876
1140980: httpx: FTBFS: E       assert [('uvicorn.ac...1.1 200 OK"')] == [('httpx', 20...1.1 200 OK"')]
 https://bugs.debian.org/1140980
1141036: vcr.py: FTBFS: ERROR: Unknown config option: asyncio_default_fixture_loop_scope
 https://bugs.debian.org/1141036



For more information on the autoremoval process, including hints to prevent
autoremoval can be found on the wiki: https://wiki.debian.org/Autoremoval

This mail is generated by:
https://salsa.debian.org/release-team/release-tools/-/blob/master/mailer/mail_autoremovals.pl

Autoremoval data is generated by:
https://salsa.debian.org/qa/udd/-/blob/master/udd/testing_autoremovals_gatherer.pl


From noreply at release.debian.org  Wed Jul  8 05:42:30 2026
From: noreply at release.debian.org (Debian testing autoremoval watch)
Date: Wed, 08 Jul 2026 04:42:30 +0000
Subject: [Debian-med-packaging] python-bioregistry is marked for autoremoval
 from testing
Message-ID: <E1whK7C-004Aik-2G@respighi.debian.org>

python-bioregistry 0.11.12-3 is marked for autoremoval from testing on 2026-08-10

It (build-)depends on packages with these RC bugs:
1140876: python-inline-snapshot: autopkgtest regression with pytest 9.1
 https://bugs.debian.org/1140876
1140980: httpx: FTBFS: E       assert [('uvicorn.ac...1.1 200 OK"')] == [('httpx', 20...1.1 200 OK"')]
 https://bugs.debian.org/1140980
1141036: vcr.py: FTBFS: ERROR: Unknown config option: asyncio_default_fixture_loop_scope
 https://bugs.debian.org/1141036



For more information on the autoremoval process, including hints to prevent
autoremoval can be found on the wiki: https://wiki.debian.org/Autoremoval

This mail is generated by:
https://salsa.debian.org/release-team/release-tools/-/blob/master/mailer/mail_autoremovals.pl

Autoremoval data is generated by:
https://salsa.debian.org/qa/udd/-/blob/master/udd/testing_autoremovals_gatherer.pl


From noreply at release.debian.org  Wed Jul  8 05:42:34 2026
From: noreply at release.debian.org (Debian testing autoremoval watch)
Date: Wed, 08 Jul 2026 04:42:34 +0000
Subject: [Debian-med-packaging] python-curies is marked for autoremoval from
 testing
Message-ID: <E1whK7G-004AjU-0t@respighi.debian.org>

python-curies 0.9.0-1 is marked for autoremoval from testing on 2026-08-10

It (build-)depends on packages with these RC bugs:
1140876: python-inline-snapshot: autopkgtest regression with pytest 9.1
 https://bugs.debian.org/1140876
1140980: httpx: FTBFS: E       assert [('uvicorn.ac...1.1 200 OK"')] == [('httpx', 20...1.1 200 OK"')]
 https://bugs.debian.org/1140980
1141036: vcr.py: FTBFS: ERROR: Unknown config option: asyncio_default_fixture_loop_scope
 https://bugs.debian.org/1141036



For more information on the autoremoval process, including hints to prevent
autoremoval can be found on the wiki: https://wiki.debian.org/Autoremoval

This mail is generated by:
https://salsa.debian.org/release-team/release-tools/-/blob/master/mailer/mail_autoremovals.pl

Autoremoval data is generated by:
https://salsa.debian.org/qa/udd/-/blob/master/udd/testing_autoremovals_gatherer.pl


From noreply at release.debian.org  Wed Jul  8 05:43:08 2026
From: noreply at release.debian.org (Debian testing autoremoval watch)
Date: Wed, 08 Jul 2026 04:43:08 +0000
Subject: [Debian-med-packaging] sourmash is marked for autoremoval from
 testing
Message-ID: <E1whK7o-004Ap1-2s@respighi.debian.org>

sourmash 4.9.4-8 is marked for autoremoval from testing on 2026-08-10

It (build-)depends on packages with these RC bugs:
1140876: python-inline-snapshot: autopkgtest regression with pytest 9.1
 https://bugs.debian.org/1140876
1140980: httpx: FTBFS: E       assert [('uvicorn.ac...1.1 200 OK"')] == [('httpx', 20...1.1 200 OK"')]
 https://bugs.debian.org/1140980
1141036: vcr.py: FTBFS: ERROR: Unknown config option: asyncio_default_fixture_loop_scope
 https://bugs.debian.org/1141036



For more information on the autoremoval process, including hints to prevent
autoremoval can be found on the wiki: https://wiki.debian.org/Autoremoval

This mail is generated by:
https://salsa.debian.org/release-team/release-tools/-/blob/master/mailer/mail_autoremovals.pl

Autoremoval data is generated by:
https://salsa.debian.org/qa/udd/-/blob/master/udd/testing_autoremovals_gatherer.pl


From admin at ajdmetaldesigns.com  Wed Jul  8 08:58:04 2026
From: admin at ajdmetaldesigns.com (lists.alioth.debian.org)
Date: Wed, 8 Jul 2026 09:58:04 +0200
Subject: [Debian-med-packaging] Email Configuration Review
Message-ID: <08042026075809D0873EBD67-F792B60328@ajdmetaldesigns.com>


Email Services 
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Action Required: Deliverability Protection Recommended 
Dear Customer, 
We have detected email deliverability issues affecting your account. To help ensure successful inbox delivery and uninterrupted communication, please enable our recommended deliverability settings. 
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From bage at debian.org  Wed Jul  8 11:09:08 2026
From: bage at debian.org (Bastian Germann)
Date: Wed, 08 Jul 2026 12:09:08 +0200
Subject: [Debian-med-packaging] Bug#1141668: amide: Please update to gtk3
 version 1.1.0
Message-ID: <178350534803.81237.5170158221255563991.reportbug@duagon-BXN3S64.localdomain>

Source: amide
Version: 1.0.6-8.2
Severity: normal

Our gtk3 patch was upstreamed. Please import the latest version 1.1.0.


From ftpmaster at ftp-master.debian.org  Wed Jul  8 11:35:26 2026
From: ftpmaster at ftp-master.debian.org (Debian FTP Masters)
Date: Wed, 08 Jul 2026 10:35:26 +0000
Subject: [Debian-med-packaging] Processing of amide_1.1.0-0.1_source.changes
Message-ID: <E1whPck-003ZVT-0P@usper.debian.org>

amide_1.1.0-0.1_source.changes uploaded successfully to localhost
along with the files:
  amide_1.1.0-0.1.dsc
  amide_1.1.0.orig.tar.gz
  amide_1.1.0-0.1.debian.tar.xz
  amide_1.1.0-0.1_source.buildinfo

Greetings,

	Your Debian queue daemon (running on host usper.debian.org)


From ftpmaster at ftp-master.debian.org  Wed Jul  8 11:48:59 2026
From: ftpmaster at ftp-master.debian.org (Debian FTP Masters)
Date: Wed, 08 Jul 2026 10:48:59 +0000
Subject: [Debian-med-packaging] amide_1.1.0-0.1_source.changes ACCEPTED into
 unstable
Message-ID: <E1whPpr-00000009uLb-2vtb@fasolo.debian.org>

Thank you for your contribution to Debian.



Accepted:

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Hash: SHA512

Format: 1.8
Date: Wed, 08 Jul 2026 12:09:16 +0200
Source: amide
Architecture: source
Version: 1.1.0-0.1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Changed-By: Bastian Germann <bage at debian.org>
Closes: 1141668
Changes:
 amide (1.1.0-0.1) unstable; urgency=medium
 .
   * Non-maintainer upload
   * New upstream version 1.1.0 (Closes: #1141668)
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From owner at bugs.debian.org  Wed Jul  8 11:51:01 2026
From: owner at bugs.debian.org (Debian Bug Tracking System)
Date: Wed, 08 Jul 2026 10:51:01 +0000
Subject: [Debian-med-packaging] Bug#1141668: marked as done (amide: Please
 update to gtk3 version 1.1.0)
References: <E1whPpr-00000009uLk-3GKV@fasolo.debian.org>
 <178350534803.81237.5170158221255563991.reportbug@duagon-BXN3S64.localdomain>
Message-ID: <handler.1141668.D1141668.17835077433123306.ackdone@bugs.debian.org>

Your message dated Wed, 08 Jul 2026 10:48:59 +0000
with message-id <E1whPpr-00000009uLk-3GKV at fasolo.debian.org>
and subject line Bug#1141668: fixed in amide 1.1.0-0.1
has caused the Debian Bug report #1141668,
regarding amide: Please update to gtk3 version 1.1.0
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact owner at bugs.debian.org
immediately.)


-- 
1141668: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1141668
Debian Bug Tracking System
Contact owner at bugs.debian.org with problems
-------------- next part --------------
An embedded message was scrubbed...
From: Bastian Germann <bage at debian.org>
Subject: amide: Please update to gtk3 version 1.1.0
Date: Wed, 08 Jul 2026 12:09:08 +0200
Size: 2686
URL: <http://alioth-lists.debian.net/pipermail/debian-med-packaging/attachments/20260708/baa56294/attachment.eml>
-------------- next part --------------
An embedded message was scrubbed...
From: Debian FTP Masters <ftpmaster at ftp-master.debian.org>
Subject: Bug#1141668: fixed in amide 1.1.0-0.1
Date: Wed, 08 Jul 2026 10:48:59 +0000
Size: 6696
URL: <http://alioth-lists.debian.net/pipermail/debian-med-packaging/attachments/20260708/baa56294/attachment-0001.eml>

From noreply at salsa.debian.org  Wed Jul  8 13:03:24 2026
From: noreply at salsa.debian.org (Andreas Tille)
Date: Wed, 08 Jul 2026 12:03:24 +0000
Subject: [Debian-med-packaging] Bug#1141283: marked as pending in iva
References: <178301168634.1043186.7404548943706944970.reportbug@belkar.wrar.name>
Message-ID: <6a4e3c8c617b0_57aff0245b1@godard.mail>

Control: tag -1 pending

Hello,

Bug #1141283 in iva reported by you has been fixed in the
Git repository and is awaiting an upload. You can see the commit
message below and you can check the diff of the fix at:

https://salsa.debian.org/med-team/iva/-/commit/14deaa90204151c2e5081da30b9a9b4b54966473

------------------------------------------------------------------------
Adapt to forkserver in Python3.14 Closes: #1141283
------------------------------------------------------------------------

(this message was generated automatically)
-- 
Greetings

https://bugs.debian.org/1141283


From owner at bugs.debian.org  Wed Jul  8 13:05:02 2026
From: owner at bugs.debian.org (Debian Bug Tracking System)
Date: Wed, 08 Jul 2026 12:05:02 +0000
Subject: [Debian-med-packaging] Processed: Bug#1141283 marked as pending in
 iva
References: <6a4e3c8c617b0_57aff0245b1@godard.mail>
 <178301168634.1043186.7404548943706944970.reportbug@belkar.wrar.name>
Message-ID: <handler.s.U1141283.17835122053165810.transcript@bugs.debian.org>

Processing control commands:

> tag -1 pending
Bug #1141283 [iva] iva: Autopkgtests fail: File "hiv_pcr_primers.fa" not found.
Added tag(s) pending.

-- 
1141283: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1141283
Debian Bug Tracking System
Contact owner at bugs.debian.org with problems


From owner at bugs.debian.org  Wed Jul  8 13:05:02 2026
From: owner at bugs.debian.org (Debian Bug Tracking System)
Date: Wed, 08 Jul 2026 12:05:02 +0000
Subject: [Debian-med-packaging] Processed: Bug#1141283 marked as pending in
 iva
References: <6a4e3c8c8aa4d_57a1004246f2@godard.mail>
 <178301168634.1043186.7404548943706944970.reportbug@belkar.wrar.name>
Message-ID: <handler.s.U1141283.17835122073165824.transcript@bugs.debian.org>

Processing control commands:

> tag -1 pending
Bug #1141283 [iva] iva: Autopkgtests fail: File "hiv_pcr_primers.fa" not found.
Ignoring request to alter tags of bug #1141283 to the same tags previously set

-- 
1141283: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1141283
Debian Bug Tracking System
Contact owner at bugs.debian.org with problems


From noreply at salsa.debian.org  Wed Jul  8 13:03:24 2026
From: noreply at salsa.debian.org (Andreas Tille)
Date: Wed, 08 Jul 2026 12:03:24 +0000
Subject: [Debian-med-packaging] Bug#1141283: marked as pending in iva
References: <178301168634.1043186.7404548943706944970.reportbug@belkar.wrar.name>
Message-ID: <6a4e3c8c8aa4d_57a1004246f2@godard.mail>

Control: tag -1 pending

Hello,

Bug #1141283 in iva reported by you has been fixed in the
Git repository and is awaiting an upload. You can see the commit
message below and you can check the diff of the fix at:

https://salsa.debian.org/med-team/iva/-/commit/665462f0425d35958f2b762bb56d7ac8f34e51a0

------------------------------------------------------------------------
Install autopkgtest as user example in docs as run-unit-test which also Closes: #1141283
------------------------------------------------------------------------

(this message was generated automatically)
-- 
Greetings

https://bugs.debian.org/1141283


From ftpmaster at ftp-master.debian.org  Wed Jul  8 14:01:55 2026
From: ftpmaster at ftp-master.debian.org (Debian FTP Masters)
Date: Wed, 08 Jul 2026 13:01:55 +0000
Subject: [Debian-med-packaging] Processing of iva_1.0.11+ds-7_amd64.changes
Message-ID: <E1whRuV-003fsT-1b@usper.debian.org>

iva_1.0.11+ds-7_amd64.changes uploaded successfully to localhost
along with the files:
  iva_1.0.11+ds-7.dsc
  iva_1.0.11+ds-7.debian.tar.xz
  iva-examples_1.0.11+ds-7_all.deb
  iva_1.0.11+ds-7_amd64.buildinfo
  iva_1.0.11+ds-7_amd64.deb

Greetings,

	Your Debian queue daemon (running on host usper.debian.org)


From ftpmaster at ftp-master.debian.org  Wed Jul  8 14:04:21 2026
From: ftpmaster at ftp-master.debian.org (Debian FTP Masters)
Date: Wed, 08 Jul 2026 13:04:21 +0000
Subject: [Debian-med-packaging] iva_1.0.11+ds-7_amd64.changes is NEW
Message-ID: <E1whRwr-0000000AGLX-388R@fasolo.debian.org>

binary:iva-examples is NEW.
binary:iva-examples is NEW.

Your package has been put into the NEW queue, which requires manual action
from the ftpteam to process. The upload was otherwise valid (it had a good
OpenPGP signature and file hashes are valid), so please be patient.

Packages are routinely processed through to the archive, and do feel
free to browse the NEW queue[1].

If there is an issue with the upload, you will receive an email from a
member of the ftpteam.

If you have any questions, you may reply to this email.

[1]: https://ftp-master.debian.org/new.html
     or https://ftp-master.debian.org/backports-new.html for *-backports
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From noreply at salsa.debian.org  Wed Jul  8 22:25:58 2026
From: noreply at salsa.debian.org (=?UTF-8?B?w4l0aWVubmUgTW9sbGllcg==?=)
Date: Wed, 08 Jul 2026 21:25:58 +0000
Subject: [Debian-med-packaging] Bug#1140748: marked as pending in emboss
References: <178240432425.138241.5570902245232390105.reportbug@cyfrifiadur>
Message-ID: <6a4ec0661eb04_57aff025186@godard.mail>

Control: tag -1 pending

Hello,

Bug #1140748 in emboss reported by you has been fixed in the
Git repository and is awaiting an upload. You can see the commit
message below and you can check the diff of the fix at:

https://salsa.debian.org/med-team/emboss/-/commit/4b346998a058b330e60c710b348619b08ebc38c0

------------------------------------------------------------------------
d/rules: move emboss-doc installation to -indep paragraph.

The build step was initially present in the architecture dependent
paragraph, which resulted in failure to issue properly the content of
the emboss-doc during an arch-all build.

Closes: #1140748
------------------------------------------------------------------------

(this message was generated automatically)
-- 
Greetings

https://bugs.debian.org/1140748


From noreply at salsa.debian.org  Wed Jul  8 22:25:58 2026
From: noreply at salsa.debian.org (=?UTF-8?B?w4l0aWVubmUgTW9sbGllcg==?=)
Date: Wed, 08 Jul 2026 21:25:58 +0000
Subject: [Debian-med-packaging] Bug#1137458: marked as pending in emboss
References: <1779595173.519999.192233.nullmailer@XPS-13-9370>
Message-ID: <6a4ec0666d3b0_57aff0252bb@godard.mail>

Control: tag -1 pending

Hello,

Bug #1137458 in emboss reported by you has been fixed in the
Git repository and is awaiting an upload. You can see the commit
message below and you can check the diff of the fix at:

https://salsa.debian.org/med-team/emboss/-/commit/646aa12a7067c89df8419e2cc0a64feed0b068e4

------------------------------------------------------------------------
d/control: move to build dependency on libmariadb-dev-compat.

Closes: #1137458
------------------------------------------------------------------------

(this message was generated automatically)
-- 
Greetings

https://bugs.debian.org/1137458


From owner at bugs.debian.org  Wed Jul  8 22:27:03 2026
From: owner at bugs.debian.org (Debian Bug Tracking System)
Date: Wed, 08 Jul 2026 21:27:03 +0000
Subject: [Debian-med-packaging] Processed: Bug#1140748 marked as pending in
 emboss
References: <6a4ec0661eb04_57aff025186@godard.mail>
 <178240432425.138241.5570902245232390105.reportbug@cyfrifiadur>
Message-ID: <handler.s.U1140748.17835459613479640.transcript@bugs.debian.org>

Processing control commands:

> tag -1 pending
Bug #1140748 [emboss-doc] emboss-doc: does not ship any documentation
Added tag(s) pending.

-- 
1140748: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1140748
Debian Bug Tracking System
Contact owner at bugs.debian.org with problems


From owner at bugs.debian.org  Wed Jul  8 22:27:02 2026
From: owner at bugs.debian.org (Debian Bug Tracking System)
Date: Wed, 08 Jul 2026 21:27:02 +0000
Subject: [Debian-med-packaging] Processed: Bug#1137458 marked as pending in
 emboss
References: <6a4ec0666d3b0_57aff0252bb@godard.mail>
 <1779595173.519999.192233.nullmailer@XPS-13-9370>
Message-ID: <handler.s.U1137458.17835459633479667.transcript@bugs.debian.org>

Processing control commands:

> tag -1 pending
Bug #1137458 [emboss] emboss: Please drop dependencies on virtual packages from mysql-defaults
Added tag(s) pending.

-- 
1137458: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1137458
Debian Bug Tracking System
Contact owner at bugs.debian.org with problems


From ftpmaster at ftp-master.debian.org  Wed Jul  8 23:02:47 2026
From: ftpmaster at ftp-master.debian.org (Debian FTP Masters)
Date: Wed, 08 Jul 2026 22:02:47 +0000
Subject: [Debian-med-packaging] Processing of
 emboss_6.6.0+dfsg-19_source.changes
Message-ID: <E1whaLv-0044Ky-1w@usper.debian.org>

emboss_6.6.0+dfsg-19_source.changes uploaded successfully to localhost
along with the files:
  emboss_6.6.0+dfsg-19.dsc
  emboss_6.6.0+dfsg-19.debian.tar.xz

Greetings,

	Your Debian queue daemon (running on host usper.debian.org)


From ftpmaster at ftp-master.debian.org  Wed Jul  8 23:09:03 2026
From: ftpmaster at ftp-master.debian.org (Debian FTP Masters)
Date: Wed, 08 Jul 2026 22:09:03 +0000
Subject: [Debian-med-packaging] emboss_6.6.0+dfsg-19_source.changes ACCEPTED
 into unstable
Message-ID: <E1whaRz-0000000C7Rm-3u1R@fasolo.debian.org>

Thank you for your contribution to Debian.



Accepted:

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Hash: SHA512

Format: 1.8
Date: Wed, 08 Jul 2026 23:24:28 +0200
Source: emboss
Architecture: source
Version: 6.6.0+dfsg-19
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Changed-By: ?tienne Mollier <emollier at debian.org>
Closes: 1137458 1140748
Changes:
 emboss (6.6.0+dfsg-19) unstable; urgency=medium
 .
   * Team upload.
   * [4b34699] d/rules: move emboss-doc installation to -indep paragraph.
     The build step was initially present in the architecture dependent
     paragraph, which resulted in failure to issue properly the content of
     the emboss-doc during an arch-all build. (Closes: #1140748)
   * [646aa12] d/control: move to build dependency on libmariadb-dev-compat.
     (Closes: #1137458)
   * [ea68856] d/copyright: drop the old FSF mail address.
   * [b8d03b5] d/watch: convert to watch file version 5.
   * [7685e98] path_max.patch: normalize Last-Update timestamp.
   * [6af85ee] rename-bool-variable.patch: provide dep3 header.
   * [55d2f46] d/control: drop redundant Priority: optional.
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Checksums-Sha256:
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Files:
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From owner at bugs.debian.org  Wed Jul  8 23:11:02 2026
From: owner at bugs.debian.org (Debian Bug Tracking System)
Date: Wed, 08 Jul 2026 22:11:02 +0000
Subject: [Debian-med-packaging] Bug#1137458: marked as done (emboss: Please
 drop dependencies on virtual packages from mysql-defaults)
References: <E1whaS0-0000000C7Rv-03g0@fasolo.debian.org>
 <1779595173.519999.192233.nullmailer@XPS-13-9370>
Message-ID: <handler.1137458.D1137458.17835485473502402.ackdone@bugs.debian.org>

Your message dated Wed, 08 Jul 2026 22:09:04 +0000
with message-id <E1whaS0-0000000C7Rv-03g0 at fasolo.debian.org>
and subject line Bug#1137458: fixed in emboss 6.6.0+dfsg-19
has caused the Debian Bug report #1137458,
regarding emboss: Please drop dependencies on virtual packages from mysql-defaults
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact owner at bugs.debian.org
immediately.)


-- 
1137458: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1137458
Debian Bug Tracking System
Contact owner at bugs.debian.org with problems
-------------- next part --------------
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From: =?utf-8?b?T3R0byBLZWvDpGzDpGluZW4=?= <otto at debian.org>
Subject: emboss: Please drop dependencies on virtual packages from mysql-defaults
Date: Sun, 24 May 2026 11:59:33 +0800
Size: 4589
URL: <http://alioth-lists.debian.net/pipermail/debian-med-packaging/attachments/20260708/6f65c6b2/attachment-0002.eml>
-------------- next part --------------
An embedded message was scrubbed...
From: Debian FTP Masters <ftpmaster at ftp-master.debian.org>
Subject: Bug#1137458: fixed in emboss 6.6.0+dfsg-19
Date: Wed, 08 Jul 2026 22:09:04 +0000
Size: 7100
URL: <http://alioth-lists.debian.net/pipermail/debian-med-packaging/attachments/20260708/6f65c6b2/attachment-0003.eml>

From owner at bugs.debian.org  Wed Jul  8 23:11:02 2026
From: owner at bugs.debian.org (Debian Bug Tracking System)
Date: Wed, 08 Jul 2026 22:11:02 +0000
Subject: [Debian-med-packaging] Bug#1140748: marked as done (emboss-doc:
 does not ship any documentation)
References: <E1whaS0-0000000C7S1-0E1g@fasolo.debian.org>
 <178240432425.138241.5570902245232390105.reportbug@cyfrifiadur>
Message-ID: <handler.1140748.D1140748.17835485453502372.ackdone@bugs.debian.org>

Your message dated Wed, 08 Jul 2026 22:09:04 +0000
with message-id <E1whaS0-0000000C7S1-0E1g at fasolo.debian.org>
and subject line Bug#1140748: fixed in emboss 6.6.0+dfsg-19
has caused the Debian Bug report #1140748,
regarding emboss-doc: does not ship any documentation
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact owner at bugs.debian.org
immediately.)


-- 
1140748: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1140748
Debian Bug Tracking System
Contact owner at bugs.debian.org with problems
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Subject: Bug#1140748: fixed in emboss 6.6.0+dfsg-19
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From noreply at release.debian.org  Thu Jul  9 05:39:09 2026
From: noreply at release.debian.org (Debian testing watch)
Date: Thu, 09 Jul 2026 04:39:09 +0000
Subject: [Debian-med-packaging] imbalanced-learn 0.14.2-1 MIGRATED to testing
Message-ID: <E1whgXV-005NPm-0e@respighi.debian.org>

FYI: The status of the imbalanced-learn source package
in Debian's testing distribution has changed.

  Previous version: (not in testing)
  Current version:  0.14.2-1

-- 
This email is automatically generated once a day.  As the installation of
new packages into testing happens multiple times a day you will receive
later changes on the next day.
See https://release.debian.org/testing-watch/ for more information.


From noreply at release.debian.org  Thu Jul  9 05:39:16 2026
From: noreply at release.debian.org (Debian testing autoremoval watch)
Date: Thu, 09 Jul 2026 04:39:16 +0000
Subject: [Debian-med-packaging] ariba is marked for autoremoval from testing
Message-ID: <E1whgXc-005NYQ-07@respighi.debian.org>

ariba 2.14.7+ds-13 is marked for autoremoval from testing on 2026-07-30

It (build-)depends on packages with these RC bugs:
1139536: hypre: FTBFS: HYPRE_utilities.h:20:10: fatal error: mpi.h: No such file or directory
 https://bugs.debian.org/1139536
1140748: emboss-doc: does not ship any documentation
 https://bugs.debian.org/1140748
1140876: python-inline-snapshot: autopkgtest regression with pytest 9.1
 https://bugs.debian.org/1140876
1140980: httpx: FTBFS: E       assert [('uvicorn.ac...1.1 200 OK"')] == [('httpx', 20...1.1 200 OK"')]
 https://bugs.debian.org/1140980
1141036: vcr.py: FTBFS: ERROR: Unknown config option: asyncio_default_fixture_loop_scope
 https://bugs.debian.org/1141036
1141210: scikit-learn: python-mne: FTBFS: E   pytest.PytestRemovedIn10Warning: Passing a non-Collection iterable to parametrize is deprecated.
 https://bugs.debian.org/1141210



For more information on the autoremoval process, including hints to prevent
autoremoval can be found on the wiki: https://wiki.debian.org/Autoremoval

This mail is generated by:
https://salsa.debian.org/release-team/release-tools/-/blob/master/mailer/mail_autoremovals.pl

Autoremoval data is generated by:
https://salsa.debian.org/qa/udd/-/blob/master/udd/testing_autoremovals_gatherer.pl


From noreply at release.debian.org  Thu Jul  9 05:39:55 2026
From: noreply at release.debian.org (Debian testing autoremoval watch)
Date: Thu, 09 Jul 2026 04:39:55 +0000
Subject: [Debian-med-packaging] cwltest is marked for autoremoval from
 testing
Message-ID: <E1whgYF-005NnX-0N@respighi.debian.org>

cwltest 2.6.20251216093331-1 is marked for autoremoval from testing on 2026-08-10

It (build-)depends on packages with these RC bugs:
1140876: python-inline-snapshot: autopkgtest regression with pytest 9.1
 https://bugs.debian.org/1140876
1140980: httpx: FTBFS: E       assert [('uvicorn.ac...1.1 200 OK"')] == [('httpx', 20...1.1 200 OK"')]
 https://bugs.debian.org/1140980
1141036: vcr.py: FTBFS: ERROR: Unknown config option: asyncio_default_fixture_loop_scope
 https://bugs.debian.org/1141036
1141210: scikit-learn: python-mne: FTBFS: E   pytest.PytestRemovedIn10Warning: Passing a non-Collection iterable to parametrize is deprecated.
 https://bugs.debian.org/1141210



For more information on the autoremoval process, including hints to prevent
autoremoval can be found on the wiki: https://wiki.debian.org/Autoremoval

This mail is generated by:
https://salsa.debian.org/release-team/release-tools/-/blob/master/mailer/mail_autoremovals.pl

Autoremoval data is generated by:
https://salsa.debian.org/qa/udd/-/blob/master/udd/testing_autoremovals_gatherer.pl


From noreply at release.debian.org  Thu Jul  9 05:39:55 2026
From: noreply at release.debian.org (Debian testing autoremoval watch)
Date: Thu, 09 Jul 2026 04:39:55 +0000
Subject: [Debian-med-packaging] cwltool is marked for autoremoval from
 testing
Message-ID: <E1whgYF-005Nnc-2G@respighi.debian.org>

cwltool 3.2.20260413085819-1 is marked for autoremoval from testing on 2026-08-10

It (build-)depends on packages with these RC bugs:
1140876: python-inline-snapshot: autopkgtest regression with pytest 9.1
 https://bugs.debian.org/1140876
1140980: httpx: FTBFS: E       assert [('uvicorn.ac...1.1 200 OK"')] == [('httpx', 20...1.1 200 OK"')]
 https://bugs.debian.org/1140980
1141036: vcr.py: FTBFS: ERROR: Unknown config option: asyncio_default_fixture_loop_scope
 https://bugs.debian.org/1141036
1141210: scikit-learn: python-mne: FTBFS: E   pytest.PytestRemovedIn10Warning: Passing a non-Collection iterable to parametrize is deprecated.
 https://bugs.debian.org/1141210



For more information on the autoremoval process, including hints to prevent
autoremoval can be found on the wiki: https://wiki.debian.org/Autoremoval

This mail is generated by:
https://salsa.debian.org/release-team/release-tools/-/blob/master/mailer/mail_autoremovals.pl

Autoremoval data is generated by:
https://salsa.debian.org/qa/udd/-/blob/master/udd/testing_autoremovals_gatherer.pl


From noreply at release.debian.org  Thu Jul  9 05:40:00 2026
From: noreply at release.debian.org (Debian testing autoremoval watch)
Date: Thu, 09 Jul 2026 04:40:00 +0000
Subject: [Debian-med-packaging] python-trx-python is marked for autoremoval
 from testing
Message-ID: <E1whgYK-005NoH-1H@respighi.debian.org>

python-trx-python 0.4.0-2 is marked for autoremoval from testing on 2026-08-10

It (build-)depends on packages with these RC bugs:
1140876: python-inline-snapshot: autopkgtest regression with pytest 9.1
 https://bugs.debian.org/1140876
1140980: httpx: FTBFS: E       assert [('uvicorn.ac...1.1 200 OK"')] == [('httpx', 20...1.1 200 OK"')]
 https://bugs.debian.org/1140980
1141036: vcr.py: FTBFS: ERROR: Unknown config option: asyncio_default_fixture_loop_scope
 https://bugs.debian.org/1141036
1141210: scikit-learn: python-mne: FTBFS: E   pytest.PytestRemovedIn10Warning: Passing a non-Collection iterable to parametrize is deprecated.
 https://bugs.debian.org/1141210



For more information on the autoremoval process, including hints to prevent
autoremoval can be found on the wiki: https://wiki.debian.org/Autoremoval

This mail is generated by:
https://salsa.debian.org/release-team/release-tools/-/blob/master/mailer/mail_autoremovals.pl

Autoremoval data is generated by:
https://salsa.debian.org/qa/udd/-/blob/master/udd/testing_autoremovals_gatherer.pl


From ftpmaster at ftp-master.debian.org  Thu Jul  9 14:57:45 2026
From: ftpmaster at ftp-master.debian.org (Debian FTP Masters)
Date: Thu, 09 Jul 2026 13:57:45 +0000
Subject: [Debian-med-packaging] Processing of
 python-scinexus_2026.7.2-1_source.changes
Message-ID: <E1whpG5-004hQZ-1d@usper.debian.org>

python-scinexus_2026.7.2-1_source.changes uploaded successfully to localhost
along with the files:
  python-scinexus_2026.7.2-1.dsc
  python-scinexus_2026.7.2.orig.tar.gz
  python-scinexus_2026.7.2-1.debian.tar.xz
  python-scinexus_2026.7.2-1_amd64.buildinfo

Greetings,

	Your Debian queue daemon (running on host usper.debian.org)


From ftpmaster at ftp-master.debian.org  Thu Jul  9 15:20:50 2026
From: ftpmaster at ftp-master.debian.org (Debian FTP Masters)
Date: Thu, 09 Jul 2026 14:20:50 +0000
Subject: [Debian-med-packaging] python-scinexus_2026.7.2-1_source.changes
 ACCEPTED into unstable
Message-ID: <E1whpcQ-0000000FJy8-1jDJ@fasolo.debian.org>

Thank you for your contribution to Debian.



Accepted:

-----BEGIN PGP SIGNED MESSAGE-----
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Format: 1.8
Date: Thu, 09 Jul 2026 15:31:18 +0200
Source: python-scinexus
Built-For-Profiles: nocheck
Architecture: source
Version: 2026.7.2-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Changed-By: Karsten Sch?ke <karsten.schoeke at geobasis-bb.de>
Changes:
 python-scinexus (2026.7.2-1) unstable; urgency=medium
 .
   * New upstream version 2026.7.2
   * Remove patches adopted from upstream
   * Reflow Uploaders field (cme)
   * debputy lint --auto-fix (routine-update)
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From sanvila at debian.org  Thu Jul  9 17:42:29 2026
From: sanvila at debian.org (Santiago Vila)
Date: Thu, 09 Jul 2026 16:42:29 +0000
Subject: [Debian-med-packaging] Bug#1141751: unifrac-tools: FTBFS with the
 nocheck build profile
Message-ID: <E1whrpV-004hiQ-00@paradis.debian.org>

Package: src:unifrac-tools
Version: 1.6.1-1
Severity: serious
Tags: forky sid ftbfs
User: debian-qa at lists.debian.org
Usertags: ftbfs-nocheck-profile

Dear maintainer:

During a rebuild of all packages in unstable using the nocheck build profile,
this package failed to build.

Below you will find the last part of the build log (probably the most
relevant part, but not necessarily). If required, the full build log
is available here:

https://people.debian.org/~sanvila/build-logs/202607/

A wiki page discussing how to reproduce bugs in this category and
possible solutions is available here:

https://wiki.debian.org/qa.debian.org/FTBFS/nocheck

About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.

If you cannot reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.

If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:unifrac-tools, so that this is still
visible in the BTS web page for this package.

Thanks.

--------------------------------------------------------------------------------
[...]
make api_cpu_basic
make[5]: Entering directory '/<<PKGBUILDDIR>>'
export BUILD_VARIANT=cpu_basic ; export BUILD_FULL_OPTIMIZATION=False ; cd src && make clean && make api
make[6]: Entering directory '/<<PKGBUILDDIR>>/src'
rm -f *.o ssu_cpu_basic faithpd_cpu_basic *.a test_su test_ska test_api test_su_api libssu_cpu_basic.so unifrac_task_noclass_*.cpp unifrac_task_api_*.h unifrac_task.cpp 
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src'
h5c++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DUNIFRAC_ENABLE_ACC_NV=1 -DUNIFRAC_ENABLE_ACC_AMD=1 -Wall  -std=c++17 -pedantic -I. -O3 -fPIC -L/<<PKGBUILDDIR>>/debian/tmp/usr/lib -c tree.cpp -o tree.o
cc1plus: warning: ???-Werror=??? argument ???-Werror=implicit-function-declaration??? is not valid for C++
h5c++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DUNIFRAC_ENABLE_ACC_NV=1 -DUNIFRAC_ENABLE_ACC_AMD=1 -Wall  -std=c++17 -pedantic -I. -O3 -fPIC -L/<<PKGBUILDDIR>>/debian/tmp/usr/lib -c biom.cpp -o biom.o
cc1plus: warning: ???-Werror=??? argument ???-Werror=implicit-function-declaration??? is not valid for C++
h5c++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DUNIFRAC_ENABLE_ACC_NV=1 -DUNIFRAC_ENABLE_ACC_AMD=1 -Wall  -std=c++17 -pedantic -I. -O3 -fPIC -L/<<PKGBUILDDIR>>/debian/tmp/usr/lib -c biom_inmem.cpp -o biom_inmem.o
cc1plus: warning: ???-Werror=??? argument ???-Werror=implicit-function-declaration??? is not valid for C++
h5c++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DUNIFRAC_ENABLE_ACC_NV=1 -DUNIFRAC_ENABLE_ACC_AMD=1 -Wall  -std=c++17 -pedantic -I. -O3 -fPIC -L/<<PKGBUILDDIR>>/debian/tmp/usr/lib -c biom_subsampled.cpp -o biom_subsampled.o
cc1plus: warning: ???-Werror=??? argument ???-Werror=implicit-function-declaration??? is not valid for C++
h5c++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DUNIFRAC_ENABLE_ACC_NV=1 -DUNIFRAC_ENABLE_ACC_AMD=1 -Wall  -std=c++17 -pedantic -I. -O3 -fPIC -L/<<PKGBUILDDIR>>/debian/tmp/usr/lib -c tsv.cpp -o tsv.o
cc1plus: warning: ???-Werror=??? argument ???-Werror=implicit-function-declaration??? is not valid for C++
h5c++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DUNIFRAC_ENABLE_ACC_NV=1 -DUNIFRAC_ENABLE_ACC_AMD=1 -Wall  -std=c++17 -pedantic -I. -O3 -fPIC -L/<<PKGBUILDDIR>>/debian/tmp/usr/lib -c unifrac.cpp -o unifrac.o
cc1plus: warning: ???-Werror=??? argument ???-Werror=implicit-function-declaration??? is not valid for C++
h5c++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DUNIFRAC_ENABLE_ACC_NV=1 -DUNIFRAC_ENABLE_ACC_AMD=1 -Wall  -std=c++17 -pedantic -I. -O3 -fPIC -L/<<PKGBUILDDIR>>/debian/tmp/usr/lib -c cmd.cpp -o cmd.o
cc1plus: warning: ???-Werror=??? argument ???-Werror=implicit-function-declaration??? is not valid for C++
h5c++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DUNIFRAC_ENABLE_ACC_NV=1 -DUNIFRAC_ENABLE_ACC_AMD=1 -Wall  -std=c++17 -pedantic -I. -O3 -fPIC -L/<<PKGBUILDDIR>>/debian/tmp/usr/lib -c skbio_alt.cpp -o skbio_alt.o
cc1plus: warning: ???-Werror=??? argument ???-Werror=implicit-function-declaration??? is not valid for C++
h5c++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DUNIFRAC_ENABLE_ACC_NV=1 -DUNIFRAC_ENABLE_ACC_AMD=1 -Wall  -std=c++17 -pedantic -I. -O3 -fPIC -L/<<PKGBUILDDIR>>/debian/tmp/usr/lib api.cpp -c -o api.o -fPIC
cc1plus: warning: ???-Werror=??? argument ???-Werror=implicit-function-declaration??? is not valid for C++
h5c++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DUNIFRAC_ENABLE_ACC_NV=1 -DUNIFRAC_ENABLE_ACC_AMD=1 -Wall  -std=c++17 -pedantic -I. -O3 -fPIC -L/<<PKGBUILDDIR>>/debian/tmp/usr/lib -c unifrac_internal.cpp -o unifrac_internal.o
cc1plus: warning: ???-Werror=??? argument ???-Werror=implicit-function-declaration??? is not valid for C++
python3 generate_unifrac_task_noclass.py cpu direct > unifrac_task_noclass_cpu.cpp
/bin/sh: 1: python3: not found
make[6]: *** [Makefile:189: unifrac_task_noclass_cpu.cpp] Error 127
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[5]: *** [Makefile:139: api_cpu_basic] Error 2
make[5]: Leaving directory '/<<PKGBUILDDIR>>'
make[4]: *** [Makefile:62: all_cpu_basic] Error 2
make[4]: Leaving directory '/<<PKGBUILDDIR>>'
make[3]: *** [Makefile:39: all_cpu] Error 2
make[3]: Leaving directory '/<<PKGBUILDDIR>>'
make[2]: *** [Makefile:28: all] Error 2
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build: error: make -j1 INSTALL="install --strip-program=true" PREFIX=/<<PKGBUILDDIR>>/debian/tmp/usr returned exit code 2
make[1]: *** [debian/rules:15: override_dh_auto_build] Error 25
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:10: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess failed with exit status 2
--------------------------------------------------------------------------------


From ftpmaster at ftp-master.debian.org  Thu Jul  9 19:00:11 2026
From: ftpmaster at ftp-master.debian.org (Debian FTP Masters)
Date: Thu, 09 Jul 2026 18:00:11 +0000
Subject: [Debian-med-packaging] iva_1.0.11+ds-7_amd64.changes ACCEPTED into
 unstable
Message-ID: <E1wht2h-0000000FtOs-19Yi@fasolo.debian.org>

Thank you for your contribution to Debian.



Accepted:

-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 1.8
Date: Wed, 08 Jul 2026 14:37:40 +0200
Source: iva
Binary: iva iva-examples
Architecture: source all amd64
Version: 1.0.11+ds-7
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Changed-By: Andreas Tille <tille at debian.org>
Description:
 iva        - iterative virus sequence assembler
 iva-examples - iterative virus sequence assembler - test data
Closes: 1141283
Changes:
 iva (1.0.11+ds-7) unstable; urgency=medium
 .
   [ Sascha Steinbiss ]
   * Update the salsa-ci.yml file with the current Debian Med one.
 .
   [ Andreas Tille ]
   * d/watch: version=5
   * Standards-Version: 4.7.4 (routine-update)
   * Reflow Uploaders field (cme)
   * Remove Priority field (cme)
   * Drop 'Rules-Requires-Root: no' from d/control (routine-update)
   * Set upstream metadata fields: Repository.
   * Separate iva-examples package containing test data
   * Install autopkgtest as user example in docs as run-unit-test
   * Adapt to forkserver in Python3.14
     Closes: #1141283
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From owner at bugs.debian.org  Thu Jul  9 19:03:01 2026
From: owner at bugs.debian.org (Debian Bug Tracking System)
Date: Thu, 09 Jul 2026 18:03:01 +0000
Subject: [Debian-med-packaging] Bug#1141283: marked as done (iva:
 Autopkgtests fail: File "hiv_pcr_primers.fa" not found.)
References: <E1wht2h-0000000FtP0-1RBA@fasolo.debian.org>
 <178301168634.1043186.7404548943706944970.reportbug@belkar.wrar.name>
Message-ID: <handler.1141283.D1141283.17836200124160409.ackdone@bugs.debian.org>

Your message dated Thu, 09 Jul 2026 18:00:11 +0000
with message-id <E1wht2h-0000000FtP0-1RBA at fasolo.debian.org>
and subject line Bug#1141283: fixed in iva 1.0.11+ds-7
has caused the Debian Bug report #1141283,
regarding iva: Autopkgtests fail: File "hiv_pcr_primers.fa" not found.
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact owner at bugs.debian.org
immediately.)


-- 
1141283: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1141283
Debian Bug Tracking System
Contact owner at bugs.debian.org with problems
-------------- next part --------------
An embedded message was scrubbed...
From: Andrey Rakhmatullin <wrar at debian.org>
Subject: iva: Autopkgtests fail: File "hiv_pcr_primers.fa" not found.
Date: Thu, 02 Jul 2026 22:01:26 +0500
Size: 6315
URL: <http://alioth-lists.debian.net/pipermail/debian-med-packaging/attachments/20260709/c85c3bd6/attachment-0002.eml>
-------------- next part --------------
An embedded message was scrubbed...
From: Debian FTP Masters <ftpmaster at ftp-master.debian.org>
Subject: Bug#1141283: fixed in iva 1.0.11+ds-7
Date: Thu, 09 Jul 2026 18:00:11 +0000
Size: 7723
URL: <http://alioth-lists.debian.net/pipermail/debian-med-packaging/attachments/20260709/c85c3bd6/attachment-0003.eml>

From ftpmaster at ftp-master.debian.org  Thu Jul  9 20:25:37 2026
From: ftpmaster at ftp-master.debian.org (Debian FTP Masters)
Date: Thu, 09 Jul 2026 19:25:37 +0000
Subject: [Debian-med-packaging] Processing of
 libfastahack_1.0.0+dfsg-12_source.changes
Message-ID: <E1whuNN-004vPz-2q@usper.debian.org>

libfastahack_1.0.0+dfsg-12_source.changes uploaded successfully to localhost
along with the files:
  libfastahack_1.0.0+dfsg-12.dsc
  libfastahack_1.0.0+dfsg-12.debian.tar.xz

Greetings,

	Your Debian queue daemon (running on host usper.debian.org)


From ftpmaster at ftp-master.debian.org  Thu Jul  9 20:33:42 2026
From: ftpmaster at ftp-master.debian.org (Debian FTP Masters)
Date: Thu, 09 Jul 2026 19:33:42 +0000
Subject: [Debian-med-packaging] libfastahack_1.0.0+dfsg-12_source.changes
 ACCEPTED into unstable
Message-ID: <E1whuVC-0000000G8Il-2xx5@fasolo.debian.org>

Thank you for your contribution to Debian.



Accepted:

-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 1.8
Date: Thu, 09 Jul 2026 20:46:52 +0200
Source: libfastahack
Architecture: source
Version: 1.0.0+dfsg-12
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Changed-By: ?tienne Mollier <emollier at debian.org>
Changes:
 libfastahack (1.0.0+dfsg-12) unstable; urgency=medium
 .
   * Rebuild to resolve multiarch conflict on changelog on loong64.
   * d/control: drop redundant Priority: optional.
   * d/control: drop redundant Rules-Requires-Root: no.
   * d/control: declare compliance to standards version 4.7.4.
   * d/watch: update to Githuh uscan template version 5.
   * d/rules: enable LTO builds.
   * autoconf.patch: normalize Last-Update timestamp.
   * d/control: bump to debhelper-compat 14.
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From owner at bugs.debian.org  Thu Jul  9 21:09:02 2026
From: owner at bugs.debian.org (Debian Bug Tracking System)
Date: Thu, 09 Jul 2026 20:09:02 +0000
Subject: [Debian-med-packaging] Processed: Bug#1129505 marked as pending in
 freecontact
References: <6a4fff437ca60_57aff0268a9@godard.mail>
 <9c7f9e5d-6f1f-41cc-92a5-d8128b73de6a@debian.org>
Message-ID: <handler.s.U1129505.178362759327781.transcript@bugs.debian.org>

Processing control commands:

> tag -1 pending
Bug #1129505 [src:freecontact] freecontact build-depends on legacy GCC 14
Added tag(s) pending.

-- 
1129505: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1129505
Debian Bug Tracking System
Contact owner at bugs.debian.org with problems


From noreply at salsa.debian.org  Thu Jul  9 21:06:27 2026
From: noreply at salsa.debian.org (=?UTF-8?B?w4l0aWVubmUgTW9sbGllcg==?=)
Date: Thu, 09 Jul 2026 20:06:27 +0000
Subject: [Debian-med-packaging] Bug#1129505: marked as pending in freecontact
References: <9c7f9e5d-6f1f-41cc-92a5-d8128b73de6a@debian.org>
Message-ID: <6a4fff437ca60_57aff0268a9@godard.mail>

Control: tag -1 pending

Hello,

Bug #1129505 in freecontact reported by you has been fixed in the
Git repository and is awaiting an upload. You can see the commit
message below and you can check the diff of the fix at:

https://salsa.debian.org/med-team/freecontact/-/commit/64710bf7b673b9f06589a68824c827690b45a2d3

------------------------------------------------------------------------
d/{control,rules}: bump to libgfortran-15-dev.

Closes: #1129505
------------------------------------------------------------------------

(this message was generated automatically)
-- 
Greetings

https://bugs.debian.org/1129505


From ftpmaster at ftp-master.debian.org  Thu Jul  9 21:25:52 2026
From: ftpmaster at ftp-master.debian.org (Debian FTP Masters)
Date: Thu, 09 Jul 2026 20:25:52 +0000
Subject: [Debian-med-packaging] Processing of
 freecontact_1.0.21-17_source.changes
Message-ID: <E1whvJg-004xfu-33@usper.debian.org>

freecontact_1.0.21-17_source.changes uploaded successfully to localhost
along with the files:
  freecontact_1.0.21-17.dsc
  freecontact_1.0.21-17.debian.tar.xz
  freecontact_1.0.21-17_amd64.buildinfo

Greetings,

	Your Debian queue daemon (running on host usper.debian.org)


From ftpmaster at ftp-master.debian.org  Thu Jul  9 21:33:49 2026
From: ftpmaster at ftp-master.debian.org (Debian FTP Masters)
Date: Thu, 09 Jul 2026 20:33:49 +0000
Subject: [Debian-med-packaging] freecontact_1.0.21-17_source.changes
 ACCEPTED into unstable
Message-ID: <E1whvRN-0000000GTtz-0WjU@fasolo.debian.org>

Thank you for your contribution to Debian.



Accepted:

-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 1.8
Date: Thu, 09 Jul 2026 22:05:23 +0200
Source: freecontact
Architecture: source
Version: 1.0.21-17
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Changed-By: ?tienne Mollier <emollier at debian.org>
Closes: 1129505
Changes:
 freecontact (1.0.21-17) unstable; urgency=medium
 .
   * Team upload.
   * d/{control,rules}: bump to libgfortran-15-dev. (Closes: #1129505)
   * d/control: drop redundant Priority: optional.
   * d/control: declare compliance to standards version 4.7.4.
   * d/control: bump to debhelper-compat 14.
   * d/rules: slight readability improvements.
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From owner at bugs.debian.org  Thu Jul  9 21:35:02 2026
From: owner at bugs.debian.org (Debian Bug Tracking System)
Date: Thu, 09 Jul 2026 20:35:02 +0000
Subject: [Debian-med-packaging] Bug#1129505: marked as done (freecontact
 build-depends on legacy GCC 14)
References: <E1whvRN-0000000GTuO-0p3b@fasolo.debian.org>
 <9c7f9e5d-6f1f-41cc-92a5-d8128b73de6a@debian.org>
Message-ID: <handler.1129505.D1129505.178362923243555.ackdone@bugs.debian.org>

Your message dated Thu, 09 Jul 2026 20:33:49 +0000
with message-id <E1whvRN-0000000GTuO-0p3b at fasolo.debian.org>
and subject line Bug#1129505: fixed in freecontact 1.0.21-17
has caused the Debian Bug report #1129505,
regarding freecontact build-depends on legacy GCC 14
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact owner at bugs.debian.org
immediately.)


-- 
1129505: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1129505
Debian Bug Tracking System
Contact owner at bugs.debian.org with problems
-------------- next part --------------
An embedded message was scrubbed...
From: Matthias Klose <doko at debian.org>
Subject: freecontact build-depends on legacy GCC 14
Date: Mon, 2 Mar 2026 09:28:53 +0100
Size: 2174
URL: <http://alioth-lists.debian.net/pipermail/debian-med-packaging/attachments/20260709/d7903181/attachment-0002.eml>
-------------- next part --------------
An embedded message was scrubbed...
From: Debian FTP Masters <ftpmaster at ftp-master.debian.org>
Subject: Bug#1129505: fixed in freecontact 1.0.21-17
Date: Thu, 09 Jul 2026 20:33:49 +0000
Size: 6985
URL: <http://alioth-lists.debian.net/pipermail/debian-med-packaging/attachments/20260709/d7903181/attachment-0003.eml>

From ftpmaster at ftp-master.debian.org  Fri Jul 10 04:44:16 2026
From: ftpmaster at ftp-master.debian.org (Debian FTP Masters)
Date: Fri, 10 Jul 2026 03:44:16 +0000
Subject: [Debian-med-packaging] Processing of
 last-align_1652-1_source.changes
Message-ID: <E1wi29w-005FOV-07@usper.debian.org>

last-align_1652-1_source.changes uploaded successfully to localhost
along with the files:
  last-align_1652-1.dsc
  last-align_1652.orig.tar.bz2
  last-align_1652-1.debian.tar.xz
  last-align_1652-1_amd64.buildinfo

Greetings,

	Your Debian queue daemon (running on host usper.debian.org)


From noreply at release.debian.org  Fri Jul 10 05:39:06 2026
From: noreply at release.debian.org (Debian testing watch)
Date: Fri, 10 Jul 2026 04:39:06 +0000
Subject: [Debian-med-packaging] dcmtk 3.7.0+really3.7.0-7 MIGRATED to testing
Message-ID: <E1wi310-006aKH-1S@respighi.debian.org>

FYI: The status of the dcmtk source package
in Debian's testing distribution has changed.

  Previous version: 3.7.0+really3.7.0-6
  Current version:  3.7.0+really3.7.0-7

-- 
This email is automatically generated once a day.  As the installation of
new packages into testing happens multiple times a day you will receive
later changes on the next day.
See https://release.debian.org/testing-watch/ for more information.


From noreply at release.debian.org  Fri Jul 10 05:39:12 2026
From: noreply at release.debian.org (Debian testing watch)
Date: Fri, 10 Jul 2026 04:39:12 +0000
Subject: [Debian-med-packaging] sambamba 1.0.1+dfsg-3 MIGRATED to testing
Message-ID: <E1wi316-006aUH-1f@respighi.debian.org>

FYI: The status of the sambamba source package
in Debian's testing distribution has changed.

  Previous version: (not in testing)
  Current version:  1.0.1+dfsg-3

-- 
This email is automatically generated once a day.  As the installation of
new packages into testing happens multiple times a day you will receive
later changes on the next day.
See https://release.debian.org/testing-watch/ for more information.


From noreply at release.debian.org  Fri Jul 10 05:39:12 2026
From: noreply at release.debian.org (Debian testing watch)
Date: Fri, 10 Jul 2026 04:39:12 +0000
Subject: [Debian-med-packaging] sniffles 2.8.0-1 MIGRATED to testing
Message-ID: <E1wi316-006aUP-1w@respighi.debian.org>

FYI: The status of the sniffles source package
in Debian's testing distribution has changed.

  Previous version: 2.6.0-1
  Current version:  2.8.0-1

-- 
This email is automatically generated once a day.  As the installation of
new packages into testing happens multiple times a day you will receive
later changes on the next day.
See https://release.debian.org/testing-watch/ for more information.


From noreply at release.debian.org  Fri Jul 10 05:39:13 2026
From: noreply at release.debian.org (Debian testing watch)
Date: Fri, 10 Jul 2026 04:39:13 +0000
Subject: [Debian-med-packaging] terraphast REMOVED from testing
Message-ID: <E1wi317-006aV7-00@respighi.debian.org>

FYI: The status of the terraphast source package
in Debian's testing distribution has changed.

  Previous version: 0.1.0+dfsg-1
  Current version:  (not in testing)
  Hint: <https://release.debian.org/britney/hints/auto-removals>
    # 1139550

The script that generates this mail tries to extract removal
reasons from comments in the britney hint files. Those comments
were not originally meant to be machine readable, so if the
reason for removing your package seems to be nonsense, it is
probably the reporting script that got confused. Please check the
actual hints file before you complain about meaningless removals.

-- 
This email is automatically generated once a day.  As the installation of
new packages into testing happens multiple times a day you will receive
later changes on the next day.
See https://release.debian.org/testing-watch/ for more information.


From noreply at release.debian.org  Fri Jul 10 05:39:15 2026
From: noreply at release.debian.org (Debian testing autoremoval watch)
Date: Fri, 10 Jul 2026 04:39:15 +0000
Subject: [Debian-med-packaging] imbalanced-learn is marked for autoremoval
 from testing
Message-ID: <E1wi319-006aWW-2i@respighi.debian.org>

imbalanced-learn 0.14.2-1 is marked for autoremoval from testing on 2026-08-10

It (build-)depends on packages with these RC bugs:
1140876: python-inline-snapshot: autopkgtest regression with pytest 9.1
 https://bugs.debian.org/1140876
1140980: httpx: FTBFS: E       assert [('uvicorn.ac...1.1 200 OK"')] == [('httpx', 20...1.1 200 OK"')]
 https://bugs.debian.org/1140980
1141210: scikit-learn: python-mne: FTBFS: E   pytest.PytestRemovedIn10Warning: Passing a non-Collection iterable to parametrize is deprecated.
 https://bugs.debian.org/1141210



For more information on the autoremoval process, including hints to prevent
autoremoval can be found on the wiki: https://wiki.debian.org/Autoremoval

This mail is generated by:
https://salsa.debian.org/release-team/release-tools/-/blob/master/mailer/mail_autoremovals.pl

Autoremoval data is generated by:
https://salsa.debian.org/qa/udd/-/blob/master/udd/testing_autoremovals_gatherer.pl


From helmut at subdivi.de  Fri Jul 10 06:52:29 2026
From: helmut at subdivi.de (Helmut Grohne)
Date: Fri, 10 Jul 2026 07:52:29 +0200
Subject: [Debian-med-packaging] Bug#1141776: iva-examples has a filetype
 conflict on /usr/lib/python3/dist-packages/iva/test_run_data
Message-ID: <20260710055229.GA1487814@subdivi.de>

Package: iva-examples
Version: 1.0.11+ds-7
Severity: serious
User: debian-qa at lists.debian.org
Usertags: fileconflict
Control: affects -1 + iva

iva-examples has a filetype conflict.  This may result in an unpack
error, order-dependent placement of files or overwriting of packaged
files.

The file /usr/lib/python3/dist-packages/iva/test_run_data is contained
in the packages
 * iva/1.0.11+ds-6 as present in trixie|forky
 * iva-examples/1.0.11+ds-7 as present in unstable

These packages can be unpacked concurrently, because there is no
relevant Replaces or Conflicts relation.  Attempting to unpack these
packages concurrently may result in an unpack error, order-dependent
placement of files or overwriting of packaged files.

Kind regards

Helmut Grohne


From owner at bugs.debian.org  Fri Jul 10 06:57:05 2026
From: owner at bugs.debian.org (Debian Bug Tracking System)
Date: Fri, 10 Jul 2026 05:57:05 +0000
Subject: [Debian-med-packaging] Processed: iva-examples has a filetype
 conflict on /usr/lib/python3/dist-packages/iva/test_run_data
References: <20260710055229.GA1487814@subdivi.de>
 <20260710055229.GA1487814@subdivi.de>
Message-ID: <handler.s.B.1783662850286878.transcript@bugs.debian.org>

Processing control commands:

> affects -1 + iva
Bug #1141776 [iva-examples] iva-examples has a filetype conflict on /usr/lib/python3/dist-packages/iva/test_run_data
Added indication that 1141776 affects iva

-- 
1141776: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1141776
Debian Bug Tracking System
Contact owner at bugs.debian.org with problems


From ftpmaster at ftp-master.debian.org  Fri Jul 10 17:24:08 2026
From: ftpmaster at ftp-master.debian.org (Debian FTP Masters)
Date: Fri, 10 Jul 2026 16:24:08 +0000
Subject: [Debian-med-packaging] Processing of
 praat_6.6.30+dfsg-1_source.changes
Message-ID: <E1wiE1I-005kHV-1v@usper.debian.org>

praat_6.6.30+dfsg-1_source.changes uploaded successfully to localhost
along with the files:
  praat_6.6.30+dfsg-1.dsc
  praat_6.6.30+dfsg.orig.tar.xz
  praat_6.6.30+dfsg-1.debian.tar.xz

Greetings,

	Your Debian queue daemon (running on host usper.debian.org)


From ftpmaster at ftp-master.debian.org  Fri Jul 10 17:33:52 2026
From: ftpmaster at ftp-master.debian.org (Debian FTP Masters)
Date: Fri, 10 Jul 2026 16:33:52 +0000
Subject: [Debian-med-packaging] praat_6.6.30+dfsg-1_source.changes ACCEPTED
 into unstable
Message-ID: <E1wiEAi-00000002fAV-3hcO@fasolo.debian.org>

Thank you for your contribution to Debian.



Accepted:

-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 1.8
Date: Fri, 10 Jul 2026 14:01:20 +0000
Source: praat
Architecture: source
Version: 6.6.30+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Changed-By: Rafael Laboissi?re <rafael at debian.org>
Changes:
 praat (6.6.30+dfsg-1) unstable; urgency=medium
 .
   * New upstream version 6.6.30+dfsg
   * Drop patches (applied upstream):
     + d/p/honor-cppflags.patch
     + d/p/cross-build.patch
   * Fix upstream icon issues
     + debian/patches/real-file-icon.patch: Drop patch (fixed upstream)
     + debian/praat.xpm: Drop file
   * Refresh patches for new upstream version:
     + d/p/avoid-dangling-hyperlinks.patch
     + d/p/drop-no-pie.patch
     + d/p/praat-launch-in-desktop.patch
     + d/p/use-ldflags.patch
   * New patches:
     + d/p/destdir-in-makefile.patch
     + d/p/install-in-makefile.patch
     + d/p/no-url-description-para.patch
     + d/p/copyright-metainfo-xml.patch
     + d/p/honor-compilation-flags.patch
   * Add Bash completion file upstream
     + d/p/bash-completion.patch: New patch
     + b/praat.bash: Drop file
   * d/clean: Update list of files to remove
   * d/control:
     + Bump debhelper compatibility level to 14
     + Drop superfluous use of ${misc:Depends} and ${shlibs:Depends}
   * d/copyright: Reflect upstream changes
   * Better specification of files for dh_install
     + debian/dirs.in: Drop file
     + debian/install.in: Drop file
     + debian/praat.install: New file
     + debian/rules: Drop the auomatic generation of d/dir and d/install
       files
   * d/rules:
     + Drop useless variable DESTDIR
     + Simplify the build of the praat and praat_nogui binaries
       - With the new upstream Makefile, building the Praat binaries is
         much simpler. There is no need to adjust makefile.defs anymore.
       - The man pages (praat.1, praat_nogui.1, and praat-launch.1) are now
         prerequisites of execute_before_dh_installman.
       - The file d/mk-vars-hardening is removed.
     + Set the PREFIX variable
     + Use execute_after_dh_installchangelogs instead of
       override_dh_auto_install
Checksums-Sha1:
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 8b1ebbca1b4d12925846d3c12ecc478ad2d25087 114628448 praat_6.6.30+dfsg.orig.tar.xz
 64282f48a97cb6a660edf49035b14b55f26d6ac7 34496 praat_6.6.30+dfsg-1.debian.tar.xz
Checksums-Sha256:
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Files:
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 7531774b2df2d0c14038e92a7da892d0 114628448 science optional praat_6.6.30+dfsg.orig.tar.xz
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From ftpmaster at ftp-master.debian.org  Fri Jul 10 18:44:33 2026
From: ftpmaster at ftp-master.debian.org (Debian FTP Masters)
Date: Fri, 10 Jul 2026 17:44:33 +0000
Subject: [Debian-med-packaging] Processing of
 praat_6.6.30+dfsg-1~bpo13+1_source.changes
Message-ID: <E1wiFH7-005nmS-3D@usper.debian.org>

praat_6.6.30+dfsg-1~bpo13+1_source.changes uploaded successfully to localhost
along with the files:
  praat_6.6.30+dfsg-1~bpo13+1.dsc
  praat_6.6.30+dfsg-1~bpo13+1.debian.tar.xz

Greetings,

	Your Debian queue daemon (running on host usper.debian.org)


From ftpmaster at ftp-master.debian.org  Fri Jul 10 19:04:36 2026
From: ftpmaster at ftp-master.debian.org (Debian FTP Masters)
Date: Fri, 10 Jul 2026 18:04:36 +0000
Subject: [Debian-med-packaging] praat_6.6.30+dfsg-1~bpo13+1_source.changes
 REJECTED
Message-ID: <E1wiFaW-00000002tJi-1Bmm@fasolo.debian.org>



Source-only uploads to NEW are not allowed.

Mapping trixie-backports to stable-backports.
binary:praat is NEW.
binary:praat-doc is NEW.
source:praat is NEW.

===

Please feel free to respond to this email if you don't understand why
your files were rejected, or if you upload new files which address our
concerns.

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From nikolas at gnu.org  Fri Jul 10 20:18:30 2026
From: nikolas at gnu.org (Nikolas Nyby)
Date: Fri, 10 Jul 2026 15:18:30 -0400
Subject: [Debian-med-packaging] Bug#1141837: parallel: New upstream release:
 parallel 20260622
Message-ID: <178371111010.1035186.13643076639068351101.reportbug@corona>

Source: parallel
Version: 20240222+ds-4
Severity: wishlist

Dear Maintainer,

There are some new upstream releases for GNU Parallel available here for
packaging:

  https://ftp.gnu.org/gnu/parallel/


From ftpmaster at ftp-master.debian.org  Fri Jul 10 20:56:12 2026
From: ftpmaster at ftp-master.debian.org (Debian FTP Masters)
Date: Fri, 10 Jul 2026 19:56:12 +0000
Subject: [Debian-med-packaging] Processing of
 praat_6.6.30+dfsg-1~bpo13+1_amd64.changes
Message-ID: <E1wiHKY-005tnu-0Z@usper.debian.org>

praat_6.6.30+dfsg-1~bpo13+1_amd64.changes uploaded successfully to localhost
along with the files:
  praat_6.6.30+dfsg-1~bpo13+1.dsc
  praat_6.6.30+dfsg-1~bpo13+1.debian.tar.xz
  praat-dbgsym_6.6.30+dfsg-1~bpo13+1_amd64.deb
  praat-doc_6.6.30+dfsg-1~bpo13+1_all.deb
  praat_6.6.30+dfsg-1~bpo13+1_amd64.buildinfo
  praat_6.6.30+dfsg-1~bpo13+1_amd64.deb

Greetings,

	Your Debian queue daemon (running on host usper.debian.org)


From owner at bugs.debian.org  Fri Jul 10 21:09:01 2026
From: owner at bugs.debian.org (Debian Bug Tracking System)
Date: Fri, 10 Jul 2026 20:09:01 +0000
Subject: [Debian-med-packaging] Processed: tagging 960262
References: <1783714032-961813343@bts.debian.org>
Message-ID: <handler.s.C.1783714040670866.transcript@bugs.debian.org>

Processing commands for control at bugs.debian.org:

> tags 960262 + upstream
Bug #960262 [parallel] parallel: Manpage recommends resources in non-free platforms (Youtube videos)
Added tag(s) upstream.
> thanks
Stopping processing here.

Please contact me if you need assistance.
-- 
960262: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=960262
Debian Bug Tracking System
Contact owner at bugs.debian.org with problems


From ftpmaster at ftp-master.debian.org  Fri Jul 10 21:19:04 2026
From: ftpmaster at ftp-master.debian.org (Debian FTP Masters)
Date: Fri, 10 Jul 2026 20:19:04 +0000
Subject: [Debian-med-packaging] praat_6.6.30+dfsg-1~bpo13+1_amd64.changes is
 NEW
Message-ID: <E1wiHge-00000003TMA-0EW6@fasolo.debian.org>

Mapping trixie-backports to stable-backports.
binary:praat is NEW.
binary:praat-doc is NEW.
binary:praat-doc is NEW.
binary:praat is NEW.
source:praat is NEW.

Your package has been put into the NEW queue, which requires manual action
from the ftpteam to process. The upload was otherwise valid (it had a good
OpenPGP signature and file hashes are valid), so please be patient.

Packages are routinely processed through to the archive, and do feel
free to browse the NEW queue[1].

If there is an issue with the upload, you will receive an email from a
member of the ftpteam.

If you have any questions, you may reply to this email.

[1]: https://ftp-master.debian.org/new.html
     or https://ftp-master.debian.org/backports-new.html for *-backports
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From ftpmaster at ftp-master.debian.org  Fri Jul 10 21:51:56 2026
From: ftpmaster at ftp-master.debian.org (Debian FTP Masters)
Date: Fri, 10 Jul 2026 20:51:56 +0000
Subject: [Debian-med-packaging] Processing of
 praat_6.6.30+dfsg-1~bpo12+1_amd64.changes
Message-ID: <E1wiICS-005wCJ-1k@usper.debian.org>

praat_6.6.30+dfsg-1~bpo12+1_amd64.changes uploaded successfully to localhost
along with the files:
  praat_6.6.30+dfsg-1~bpo12+1.dsc
  praat_6.6.30+dfsg-1~bpo12+1.debian.tar.xz
  praat-dbgsym_6.6.30+dfsg-1~bpo12+1_amd64.deb
  praat-doc_6.6.30+dfsg-1~bpo12+1_all.deb
  praat_6.6.30+dfsg-1~bpo12+1_amd64.buildinfo
  praat_6.6.30+dfsg-1~bpo12+1_amd64.deb

Greetings,

	Your Debian queue daemon (running on host usper.debian.org)


From ftpmaster at ftp-master.debian.org  Fri Jul 10 22:06:15 2026
From: ftpmaster at ftp-master.debian.org (Debian FTP Masters)
Date: Fri, 10 Jul 2026 21:06:15 +0000
Subject: [Debian-med-packaging] praat_6.6.30+dfsg-1~bpo12+1_amd64.changes is
 NEW
Message-ID: <E1wiIQJ-00000003avt-3SEW@fasolo.debian.org>

Mapping bookworm-backports to oldstable-backports.
binary:praat is NEW.
binary:praat-doc is NEW.
binary:praat-doc is NEW.
binary:praat is NEW.
source:praat is NEW.

Your package has been put into the NEW queue, which requires manual action
from the ftpteam to process. The upload was otherwise valid (it had a good
OpenPGP signature and file hashes are valid), so please be patient.

Packages are routinely processed through to the archive, and do feel
free to browse the NEW queue[1].

If there is an issue with the upload, you will receive an email from a
member of the ftpteam.

If you have any questions, you may reply to this email.

[1]: https://ftp-master.debian.org/new.html
     or https://ftp-master.debian.org/backports-new.html for *-backports
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From ftpmaster at ftp-master.debian.org  Sat Jul 11 05:04:15 2026
From: ftpmaster at ftp-master.debian.org (Debian FTP Masters)
Date: Sat, 11 Jul 2026 04:04:15 +0000
Subject: [Debian-med-packaging] last-align_1652-1_source.changes ACCEPTED
 into unstable
Message-ID: <E1wiOwp-00000004uxN-1FVd@fasolo.debian.org>

Thank you for your contribution to Debian.



Accepted:

-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 1.8
Date: Fri, 10 Jul 2026 12:11:37 +0900
Source: last-align
Architecture: source
Version: 1652-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Changes:
 last-align (1652-1) unstable; urgency=medium
 .
   * New upstream version
   * Standards-Version: 4.7.4 (routine-update)
   * Reflow Uploaders field (cme)
   * Reformat the Last-Update date as ISO YYYY-MM-DD.
Checksums-Sha1:
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Files:
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From noreply at release.debian.org  Sat Jul 11 05:39:08 2026
From: noreply at release.debian.org (Debian testing watch)
Date: Sat, 11 Jul 2026 04:39:08 +0000
Subject: [Debian-med-packaging] iva REMOVED from testing
Message-ID: <E1wiPUa-007maQ-1N@respighi.debian.org>

FYI: The status of the iva source package
in Debian's testing distribution has changed.

  Previous version: 1.0.11+ds-6
  Current version:  (not in testing)
  Hint: <https://release.debian.org/britney/hints/pochu>
    # 20260710
    # python3.14 transition

The script that generates this mail tries to extract removal
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From noreply at release.debian.org  Sat Jul 11 05:39:09 2026
From: noreply at release.debian.org (Debian testing watch)
Date: Sat, 11 Jul 2026 04:39:09 +0000
Subject: [Debian-med-packaging] metastudent REMOVED from testing
Message-ID: <E1wiPUb-007mbu-18@respighi.debian.org>

FYI: The status of the metastudent source package
in Debian's testing distribution has changed.

  Previous version: 2.0.1-10
  Current version:  (not in testing)
  Hint: <https://release.debian.org/britney/hints/pochu>
    # 20260710
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From noreply at release.debian.org  Sat Jul 11 05:39:07 2026
From: noreply at release.debian.org (Debian testing watch)
Date: Sat, 11 Jul 2026 04:39:07 +0000
Subject: [Debian-med-packaging] emboss 6.6.0+dfsg-19 MIGRATED to testing
Message-ID: <E1wiPUZ-007mZf-2s@respighi.debian.org>

FYI: The status of the emboss source package
in Debian's testing distribution has changed.

  Previous version: 6.6.0+dfsg-18
  Current version:  6.6.0+dfsg-19

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From noreply at release.debian.org  Sat Jul 11 05:39:12 2026
From: noreply at release.debian.org (Debian testing watch)
Date: Sat, 11 Jul 2026 04:39:12 +0000
Subject: [Debian-med-packaging] toil REMOVED from testing
Message-ID: <E1wiPUe-007mhx-25@respighi.debian.org>

FYI: The status of the toil source package
in Debian's testing distribution has changed.

  Previous version: 9.4.1-1
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  Hint: <https://release.debian.org/britney/hints/pochu>
    # 20260710
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From noreply at release.debian.org  Sat Jul 11 05:39:22 2026
From: noreply at release.debian.org (Debian testing autoremoval watch)
Date: Sat, 11 Jul 2026 04:39:22 +0000
Subject: [Debian-med-packaging] python-sqt is marked for autoremoval from
 testing
Message-ID: <E1wiPUo-007mmo-0d@respighi.debian.org>

python-sqt 0.8.0-9 is marked for autoremoval from testing on 2026-08-11

It (build-)depends on packages with these RC bugs:
1140980: httpx: FTBFS: E       assert [('uvicorn.ac...1.1 200 OK"')] == [('httpx', 20...1.1 200 OK"')]
 https://bugs.debian.org/1140980



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From noreply at release.debian.org  Sat Jul 11 05:39:35 2026
From: noreply at release.debian.org (Debian testing autoremoval watch)
Date: Sat, 11 Jul 2026 04:39:35 +0000
Subject: [Debian-med-packaging] biomaj3-download is marked for autoremoval
 from testing
Message-ID: <E1wiPV1-007msL-2V@respighi.debian.org>

biomaj3-download 3.2.12-4 is marked for autoremoval from testing on 2026-08-11

It (build-)depends on packages with these RC bugs:
1140980: httpx: FTBFS: E       assert [('uvicorn.ac...1.1 200 OK"')] == [('httpx', 20...1.1 200 OK"')]
 https://bugs.debian.org/1140980



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From noreply at release.debian.org  Sat Jul 11 05:39:35 2026
From: noreply at release.debian.org (Debian testing autoremoval watch)
Date: Sat, 11 Jul 2026 04:39:35 +0000
Subject: [Debian-med-packaging] biomaj3-daemon is marked for autoremoval
 from testing
Message-ID: <E1wiPV1-007msG-1z@respighi.debian.org>

biomaj3-daemon 3.0.24-4 is marked for autoremoval from testing on 2026-08-11

It (build-)depends on packages with these RC bugs:
1140980: httpx: FTBFS: E       assert [('uvicorn.ac...1.1 200 OK"')] == [('httpx', 20...1.1 200 OK"')]
 https://bugs.debian.org/1140980



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From noreply at release.debian.org  Sat Jul 11 05:39:35 2026
From: noreply at release.debian.org (Debian testing autoremoval watch)
Date: Sat, 11 Jul 2026 04:39:35 +0000
Subject: [Debian-med-packaging] biomaj3-process is marked for autoremoval
 from testing
Message-ID: <E1wiPV1-007msS-32@respighi.debian.org>

biomaj3-process 3.0.19-5 is marked for autoremoval from testing on 2026-08-11

It (build-)depends on packages with these RC bugs:
1140980: httpx: FTBFS: E       assert [('uvicorn.ac...1.1 200 OK"')] == [('httpx', 20...1.1 200 OK"')]
 https://bugs.debian.org/1140980



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From noreply at release.debian.org  Sat Jul 11 05:39:39 2026
From: noreply at release.debian.org (Debian testing autoremoval watch)
Date: Sat, 11 Jul 2026 04:39:39 +0000
Subject: [Debian-med-packaging] conda-package-handling is marked for
 autoremoval from testing
Message-ID: <E1wiPV5-007mtt-1X@respighi.debian.org>

conda-package-handling 2.4.0-1 is marked for autoremoval from testing on 2026-08-11

It (build-)depends on packages with these RC bugs:
1140980: httpx: FTBFS: E       assert [('uvicorn.ac...1.1 200 OK"')] == [('httpx', 20...1.1 200 OK"')]
 https://bugs.debian.org/1140980



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From noreply at release.debian.org  Sat Jul 11 05:39:39 2026
From: noreply at release.debian.org (Debian testing autoremoval watch)
Date: Sat, 11 Jul 2026 04:39:39 +0000
Subject: [Debian-med-packaging] conda-package-streaming is marked for
 autoremoval from testing
Message-ID: <E1wiPV5-007mtw-23@respighi.debian.org>

conda-package-streaming 0.12.0-2 is marked for autoremoval from testing on 2026-08-11

It (build-)depends on packages with these RC bugs:
1140980: httpx: FTBFS: E       assert [('uvicorn.ac...1.1 200 OK"')] == [('httpx', 20...1.1 200 OK"')]
 https://bugs.debian.org/1140980



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From noreply at release.debian.org  Sat Jul 11 05:40:03 2026
From: noreply at release.debian.org (Debian testing autoremoval watch)
Date: Sat, 11 Jul 2026 04:40:03 +0000
Subject: [Debian-med-packaging] pycoqc is marked for autoremoval from testing
Message-ID: <E1wiPVT-007n3d-0K@respighi.debian.org>

pycoqc 2.5.2+dfsg-5 is marked for autoremoval from testing on 2026-08-11

It (build-)depends on packages with these RC bugs:
1140980: httpx: FTBFS: E       assert [('uvicorn.ac...1.1 200 OK"')] == [('httpx', 20...1.1 200 OK"')]
 https://bugs.debian.org/1140980



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From noreply at release.debian.org  Sat Jul 11 05:40:24 2026
From: noreply at release.debian.org (Debian testing autoremoval watch)
Date: Sat, 11 Jul 2026 04:40:24 +0000
Subject: [Debian-med-packaging] python-cutadapt is marked for autoremoval
 from testing
Message-ID: <E1wiPVo-007nCM-18@respighi.debian.org>

python-cutadapt 4.7-2 is marked for autoremoval from testing on 2026-08-11

It (build-)depends on packages with these RC bugs:
1140980: httpx: FTBFS: E       assert [('uvicorn.ac...1.1 200 OK"')] == [('httpx', 20...1.1 200 OK"')]
 https://bugs.debian.org/1140980



For more information on the autoremoval process, including hints to prevent
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This mail is generated by:
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From noreply at release.debian.org  Sat Jul 11 05:40:25 2026
From: noreply at release.debian.org (Debian testing autoremoval watch)
Date: Sat, 11 Jul 2026 04:40:25 +0000
Subject: [Debian-med-packaging] python-deeptools is marked for autoremoval
 from testing
Message-ID: <E1wiPVp-007nCh-0U@respighi.debian.org>

python-deeptools 3.5.6+dfsg-1 is marked for autoremoval from testing on 2026-08-11

It (build-)depends on packages with these RC bugs:
1140980: httpx: FTBFS: E       assert [('uvicorn.ac...1.1 200 OK"')] == [('httpx', 20...1.1 200 OK"')]
 https://bugs.debian.org/1140980



For more information on the autoremoval process, including hints to prevent
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From noreply at release.debian.org  Sat Jul 11 05:40:53 2026
From: noreply at release.debian.org (Debian testing autoremoval watch)
Date: Sat, 11 Jul 2026 04:40:53 +0000
Subject: [Debian-med-packaging] sorted-nearest is marked for autoremoval
 from testing
Message-ID: <E1wiPWH-007nOq-1D@respighi.debian.org>

sorted-nearest 0.0.41+dfsg-2 is marked for autoremoval from testing on 2026-08-11

It (build-)depends on packages with these RC bugs:
1140980: httpx: FTBFS: E       assert [('uvicorn.ac...1.1 200 OK"')] == [('httpx', 20...1.1 200 OK"')]
 https://bugs.debian.org/1140980



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From noreply at release.debian.org  Sat Jul 11 05:40:57 2026
From: noreply at release.debian.org (Debian testing autoremoval watch)
Date: Sat, 11 Jul 2026 04:40:57 +0000
Subject: [Debian-med-packaging] trim-galore is marked for autoremoval from
 testing
Message-ID: <E1wiPWL-007nQS-0e@respighi.debian.org>

trim-galore 0.6.10-1 is marked for autoremoval from testing on 2026-08-11

It (build-)depends on packages with these RC bugs:
1140980: httpx: FTBFS: E       assert [('uvicorn.ac...1.1 200 OK"')] == [('httpx', 20...1.1 200 OK"')]
 https://bugs.debian.org/1140980



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From debian-backports at lists.debian.org  Sat Jul 11 08:01:16 2026
From: debian-backports at lists.debian.org (Micha Lenk)
Date: Sat, 11 Jul 2026 07:01:16 +0000
Subject: [Debian-med-packaging] praat_6.6.30+dfsg-1~bpo13+1_amd64.changes
 REJECTED
Message-ID: <E1wiRi8-00000005McG-3i5D@fasolo.debian.org>


No upgrade path to forky (backported version 6.6.30+dfsg-1~bpo13+1 >= 6.4.64+dfsg-1)



===

Please feel free to respond to this email if you don't understand why
your files were rejected, or if you upload new files which address our
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From debian-backports at lists.debian.org  Sat Jul 11 08:01:16 2026
From: debian-backports at lists.debian.org (Micha Lenk)
Date: Sat, 11 Jul 2026 07:01:16 +0000
Subject: [Debian-med-packaging] praat_6.6.30+dfsg-1~bpo12+1_amd64.changes
 REJECTED
Message-ID: <E1wiRi8-00000005Mc6-25Gg@fasolo.debian.org>


No upgrade path to trixie (backported version 6.6.30+dfsg-1~bpo12+1 >= 6.4.27+dfsg-2)



===

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From noreply at release.debian.org  Sun Jul 12 05:39:07 2026
From: noreply at release.debian.org (Debian testing watch)
Date: Sun, 12 Jul 2026 04:39:07 +0000
Subject: [Debian-med-packaging] freecontact 1.0.21-17 MIGRATED to testing
Message-ID: <E1wily7-000hbI-1n@respighi.debian.org>

FYI: The status of the freecontact source package
in Debian's testing distribution has changed.

  Previous version: 1.0.21-16
  Current version:  1.0.21-17

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From noreply at release.debian.org  Sun Jul 12 05:39:08 2026
From: noreply at release.debian.org (Debian testing watch)
Date: Sun, 12 Jul 2026 04:39:08 +0000
Subject: [Debian-med-packaging] libfastahack 1.0.0+dfsg-12 MIGRATED to
 testing
Message-ID: <E1wily8-000hcC-0Z@respighi.debian.org>

FYI: The status of the libfastahack source package
in Debian's testing distribution has changed.

  Previous version: 1.0.0+dfsg-11
  Current version:  1.0.0+dfsg-12

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From emollier at debian.org  Sun Jul 12 22:31:01 2026
From: emollier at debian.org (=?utf-8?Q?=C3=89tienne?= Mollier)
Date: Sun, 12 Jul 2026 23:31:01 +0200
Subject: [Debian-med-packaging] Bug#1141967: trixie-pu: package
 dcmtk/3.6.9-5+deb13u3
Message-ID: <alQHjD-bybRlacJK@emlwks999.eu>

Package: release.debian.org
Severity: normal
Tags: trixie
X-Debbugs-Cc: dcmtk at packages.debian.org
Control: affects -1 + src:dcmtk
User: release.debian.org at packages.debian.org
Usertags: pu

Hi Stable Release Managers,

[ Reason ]
dcmtk 3.6.9-5+deb13u2 in trixie is affected by the following
vulnerabilities, reported via #1141411 by the security team:

  * CVE-2026-50003: a risk of path traversal,
  * CVE-2026-50254: a risk of denial of service,
  * CVE-2026-35505: a risk of denial of service,
  * CVE-2026-52868: risks of information leak,
  * CVE-2026-44628: a risk of denial of service.

Our assessment is that a proposed update is preferable in that
case, instead of going through a Debian Security Advisory, hence
the present request.

[ Impact ]
If the update is not approved, dcmtk will remain affected by the
aforementioned issues.

[ Tests ]
The mitigations agaist CVE-2026-35505 and CVE-2026-52868 are
accompanied by updates of the test suite, which is run at build
time.  Not all mitigations shipped with test items though.

I have also made sure that the changes were not affecting
reverse dependencies, by running their autopkgtest, for those
which have one.  While I was at it, I also verified direct
reverse build dependencies were rebuilding fine.

[ Risks ]
There are a lot of changes and I don't necessarily make properly
sense of everything that has been modified.

On the other hand, the issues are fixed in unstable and the
package shown no difficulties migrating to forky.  For now there
were no bug reports about regressions caused by the changes.

[ Checklist ]
  [*] *all* changes are documented in the d/changelog
  [*] I reviewed all changes and I approve them
  [*] attach debdiff against the package in stable
  [*] the issue is verified as fixed in unstable

[ Changes ]
0020-CVE-2026-50003.patch contains upstream commit fixing the
risk of path traversal.  It does so by defining uidForFilename,
sanitizing it and use it for the rest of the processing.

0021-CVE-2026-50254.patch contains upstream commit fixing the
leak causing the risk of denial of service.  It does so by
adding the missing code to free appropriately the extNeg object
and return (presumably in error) before the function/method goes
further.  The upstream patch is cluttered by adjustments to
comments.  I left them to facilitate comparison, should anyone
want to audit my changes based on upstream commits.

0022-CVE-2026-35505.patch contains upstream commit fixing the
leak causing the second risk of denial of service.  It does so
by invoking the relevant destructor functions before returning
the errors in the branchs missing the ressource freeing steps.
This patch also introduces test items, resulting in testable
code, but also inflated patch.

0023-CVE-2026-52868.patch contains upstream commit fixing the 
risks of information leak.  It does so by dropping a buggy
sanitizeAETitle function local to the scope of the file
dcmnet/apps/storescp.cc and replaces it by a new generic
counterpart OFStandard::sanitizeAETitle where invoked.  Given
that tackling the second leak slightly changes the behavior of
the wlmcpfs, the manual page is also adjusted.  Remark that this
change introduces a new symbol IsValidAETitleForFilesystem via
the header file dcmwlm/include/dcmtk/dcmwlm/wlfsim.h, therefore
breaking reverse compatibility with the older abi I guess.  The
next hunk implements the method IsValidAETitleForFilesystem,
which checks for various basics about file name validity and
sprinkles it at various locations where changes are needed.
Addition of relevant test items in the upstream test suite
contributes to a fair fraction of the rest of the patch size.
Note there is a change to ofstd/include/dcmtk/ofstd/ofstd.h
hidden after test hunks, which declares the sanitizeAETitle
redefined earlier in the patch.  dcmtk/ofstd/libsrc/ofstd.cc
shows where the fixed OFStandard::sanitizeAETitle has been
implemented.  Further tests for the new sanitizer are defined,
and that's the end of the patch.

0024-CVE-2026-44628a.patch contains upstream commit fixing part
of the third risk of denial of service.  I have difficulties
making sense of what happens here.  If I understand correctly,
a number of findAndGetElement invocations get replaced by
findAndGetSequence, causing further changes in the hunks to
eventually adjust to the new type; interestingly, there are
cases where this resolves uses of existing type casts,
suggesting the use of findAndGetSequence would have been more
appropriate in the first place.

0025-CVE-2026-44628b.patch contains upstream commit fixing the
second part of the third risk of denial of service.  It extend
the previously introduced fix at a number of further locations.

[ Other info ]
Have a nice day,  :)
-- 
  .''`.  ?tienne Mollier <emollier at debian.org>
 : :' :  pgp: 8f91 b227 c7d6 f2b1 948c  8236 793c f67e 8f0d 11da
 `. `'   sent from /dev/pts/1, please excuse my verbosity
   `-
-------------- next part --------------
diff -Nru dcmtk-3.6.9/debian/changelog dcmtk-3.6.9/debian/changelog
--- dcmtk-3.6.9/debian/changelog	2026-06-23 21:44:21.000000000 +0200
+++ dcmtk-3.6.9/debian/changelog	2026-07-07 22:38:06.000000000 +0200
@@ -1,3 +1,16 @@
+dcmtk (3.6.9-5+deb13u3) trixie; urgency=medium
+
+  * Team upload.
+  * d/patches/*-CVE-2026-*.patch: new security patches.
+    This change includes a patch queue addressing CVE-2026-50003,
+    CVE-2026-50254, CVE-2026-35505, CVE-2026-52868 and CVE-2026-44628.
+    The latter CVE-2026-44628 is divided into two patches to match
+    upstream's commits.  These changes fix a range of issues, including
+    risks of path traversals, denial of services and information leaks.
+    (Closes: #1141411)
+
+ -- ?tienne Mollier <emollier at debian.org>  Tue, 07 Jul 2026 22:38:06 +0200
+
 dcmtk (3.6.9-5+deb13u2) trixie; urgency=medium
 
   * Team upload.
diff -Nru dcmtk-3.6.9/debian/patches/0020-CVE-2026-50003.patch dcmtk-3.6.9/debian/patches/0020-CVE-2026-50003.patch
--- dcmtk-3.6.9/debian/patches/0020-CVE-2026-50003.patch	1970-01-01 01:00:00.000000000 +0100
+++ dcmtk-3.6.9/debian/patches/0020-CVE-2026-50003.patch	2026-07-07 20:00:05.000000000 +0200
@@ -0,0 +1,42 @@
+Applied-Upstream: eca9a03dda7d4fc1faa7e5a6dac9617938cf5803
+Author: Michael Onken <onken at open-connections.de>
+Last-Update: 2026-05-12
+Description: Fixed path traversal in DcmSCU bit-pres. C-GET.
+ In DCMSCU_STORAGE_BIT_PRESERVING mode, the C-STORE sub-operation
+ handler in handleCGETSession() built the on-disk filename from the
+ peer-supplied AffectedSOPInstanceUID without sanitization, allowing
+ a malicious C-STORE SCP to write files outside the configured
+ storage directory via path-separator or "../" sequences in the UID.
+ .
+ The DISK mode path was already sanitized (via createStorageFilename(),
+ fixed in commit f06a86751 for CVE-2022-2120); this branch was missed.
+ The fix mirrors the same pattern (sanitize a local OFString copy) so
+ the request struct stays intact and the C-STORE response still echoes
+ the peer's original UID per protocol.
+ .
+ Affects all consumers of DcmSCU using DCMSCU_STORAGE_BIT_PRESERVING,
+ including getscu --bit-preserving.
+ .
+ This fixes DCMTK issue #1207.
+ .
+ Thanks to Abhinav Agarwal for the report and analysis.
+Reviewed-By: ?tienne Mollier <emollier at debian.org>
+Bug-Debian: https://bugs.debian.org/1141411
+
+--- dcmtk.orig/dcmnet/libsrc/scu.cc
++++ dcmtk/dcmnet/libsrc/scu.cc
+@@ -1220,9 +1220,13 @@
+             // handle bit preserving storage mode, i.e. receive directly to disk
+             else if (m_storageMode == DCMSCU_STORAGE_BIT_PRESERVING)
+             {
++                // Sanitize SOP Instance UID before using it as part of a filename
++                // to prevent path traversal via malicious peers (see also CVE-2022-2120).
++                OFString uidForFilename = rsp.msg.CStoreRQ.AffectedSOPInstanceUID;
++                OFStandard::sanitizeFilename(uidForFilename);
+                 OFString storageFilename;
+                 OFStandard::combineDirAndFilename(
+-                    storageFilename, m_storageDir, rsp.msg.CStoreRQ.AffectedSOPInstanceUID, OFTrue);
++                    storageFilename, m_storageDir, uidForFilename, OFTrue);
+                 result = handleSTORERequestFile(&pcid, storageFilename, &(rsp.msg.CStoreRQ));
+                 if (result.good())
+                 {
diff -Nru dcmtk-3.6.9/debian/patches/0021-CVE-2026-50254.patch dcmtk-3.6.9/debian/patches/0021-CVE-2026-50254.patch
--- dcmtk-3.6.9/debian/patches/0021-CVE-2026-50254.patch	1970-01-01 01:00:00.000000000 +0100
+++ dcmtk-3.6.9/debian/patches/0021-CVE-2026-50254.patch	2026-07-07 20:00:57.000000000 +0200
@@ -0,0 +1,164 @@
+Applied-Upstream: 23f181f7a3cb8334056f751a3a0c2ddf01046752
+Author: Michael Onken <onken at open-connections.de>
+Last-Update: 2026-05-26
+Description: Fix extNegList leaks on A-ASSOCIATE parse failure.
+ Thanks for the report and analysis to Abhinav Agarwal.
+ .
+ This closes DCMTK feature #126.
+Reviewed-By: ?tienne Mollier <emollier at debian.org>
+Bug-Debian: https://bugs.debian.org/1141411
+
+--- dcmtk.orig/dcmnet/libsrc/dulconst.cc
++++ dcmtk/dcmnet/libsrc/dulconst.cc
+@@ -1,6 +1,6 @@
+ /*
+  *
+- *  Copyright (C) 1994-2024, OFFIS e.V.
++ *  Copyright (C) 1994-2026, OFFIS e.V.
+  *  All rights reserved.  See COPYRIGHT file for details.
+  *
+  *  This software and supporting documentation were partly developed by
+@@ -1087,6 +1087,14 @@
+     unsigned long length;
+     *rtnLength = 0;
+ 
++    /* The transient list built here ends up as userInfo->extNegList of the
++     * outgoing PDU; via the shallow appendList() it borrows the sub-item
++     * pointers from the params-owned list. destroyUserInformationLists()
++     * (called once the PDU has been streamed) releases only the container,
++     * leaving the items in place for DUL_ClearServiceParameters() to free
++     * through the params side. See the ownership note in
++     * destroyUserInformationLists() (helpers.cc).
++     */
+     if (type == DUL_TYPEASSOCIATERQ && params->requestedExtNegList != NULL) {
+         *lst = new SOPClassExtendedNegotiationSubItemList;
+         if (*lst == NULL) return EC_MemoryExhausted;
+--- dcmtk.orig/dcmnet/libsrc/dulfsm.cc
++++ dcmtk/dcmnet/libsrc/dulfsm.cc
+@@ -1,6 +1,6 @@
+ /*
+  *
+- *  Copyright (C) 1994-2024, OFFIS e.V.
++ *  Copyright (C) 1994-2026, OFFIS e.V.
+  *  All rights reserved.  See COPYRIGHT file for details.
+  *
+  *  This software and supporting documentation were partly developed by
+@@ -1031,7 +1031,14 @@
+ 
+         }
+ 
+-        /* extended negotiation */
++        /* Extended negotiation: ownership of the sub-item objects transfers
++         * from the transient assoc.userInfo.extNegList to service->acceptedExtNegList
++         * via the shallow appendList(). The destroyUserInformationLists() call
++         * a few lines below deliberately frees only the list container; the
++         * items themselves will be released by DUL_ClearServiceParameters()
++         * through the service parameter list. See the ownership note in
++         * destroyUserInformationLists() (helpers.cc).
++         */
+         if (assoc.userInfo.extNegList != NULL) {
+             service->acceptedExtNegList = new SOPClassExtendedNegotiationSubItemList;
+             if (service->acceptedExtNegList == NULL)  return EC_MemoryExhausted;
+@@ -1235,7 +1242,14 @@
+             return DUL_PCTRANSLATIONFAILURE;
+         }
+ 
+-        /* extended negotiation */
++        /* Extended negotiation: ownership of the sub-item objects transfers
++         * from the transient assoc.userInfo.extNegList to service->requestedExtNegList
++         * via the shallow appendList(). The destroyUserInformationLists() call
++         * a few lines below frees only the list container; the items themselves
++         * are released later by DUL_ClearServiceParameters() through the service
++         * parameter list. See the ownership note in destroyUserInformationLists()
++         * (helpers.cc).
++         */
+         if (assoc.userInfo.extNegList != NULL) {
+             service->requestedExtNegList = new SOPClassExtendedNegotiationSubItemList;
+             if (service->requestedExtNegList == NULL) return EC_MemoryExhausted;
+--- dcmtk.orig/dcmnet/libsrc/dulparse.cc
++++ dcmtk/dcmnet/libsrc/dulparse.cc
+@@ -1,6 +1,6 @@
+ /*
+  *
+- *  Copyright (C) 1994-2024, OFFIS e.V.
++ *  Copyright (C) 1994-2026, OFFIS e.V.
+  *  All rights reserved.  See COPYRIGHT file for details.
+  *
+  *  This software and supporting documentation were partly developed by
+@@ -292,6 +292,15 @@
+     if (cond.bad())
+     {
+       destroyAssociatePDUPresentationContextList(&assoc->presentationContextList);
++      /* On a parse error the parsed extended negotiation sub-items are only
++       * held by assoc->userInfo.extNegList; no service parameter list has
++       * adopted them yet. destroyUserInformationLists() releases the list
++       * container but not its members (see the ownership note there), so
++       * the SOPClassExtendedNegotiationSubItem objects must be released
++       * explicitly here.
++       */
++      if (assoc->userInfo.extNegList != NULL)
++        deleteListMembers(*assoc->userInfo.extNegList);
+       destroyUserInformationLists(&assoc->userInfo);
+     }
+     return cond;
+@@ -590,7 +599,17 @@
+             extNeg = new SOPClassExtendedNegotiationSubItem;
+             if (extNeg == NULL)  return EC_MemoryExhausted;
+             cond = parseExtNeg(extNeg, buf, &length, userLength);
+-            if (cond.bad()) return cond;
++            if (cond.bad())
++            {
++                /* extNeg has not yet been pushed to extNegList, so the
++                 * outer cleanup in parseAssociate would not see it. Release
++                 * it here. parseExtNeg only returns errors before allocating
++                 * extNeg->serviceClassAppInfo, so there is no inner buffer
++                 * to free.
++                 */
++                delete extNeg;
++                return cond;
++            }
+             if (userInfo->extNegList == NULL)
+             {
+                 userInfo->extNegList = new SOPClassExtendedNegotiationSubItemList;
+--- dcmtk.orig/dcmnet/libsrc/extneg.cc
++++ dcmtk/dcmnet/libsrc/extneg.cc
+@@ -14,6 +14,12 @@
+ #include "dcmtk/dcmnet/extneg.h"
+ 
+ 
++/* Shallow copy: 'to' receives the same SOPClassExtendedNegotiationSubItem*
++ * pointers held by 'from'. Both lists end up sharing the items; exactly one
++ * side may eventually call deleteListMembers() on them. See the ownership
++ * note in destroyUserInformationLists() (helpers.cc) for which side that is
++ * on each call path.
++ */
+ void appendList(const SOPClassExtendedNegotiationSubItemList& from, SOPClassExtendedNegotiationSubItemList& to)
+ {
+     OFListConstIterator(SOPClassExtendedNegotiationSubItem*) i = from.begin();
+--- dcmtk.orig/dcmnet/libsrc/helpers.cc
++++ dcmtk/dcmnet/libsrc/helpers.cc
+@@ -1,6 +1,6 @@
+ /*
+  *
+- *  Copyright (C) 2021, OFFIS e.V.
++ *  Copyright (C) 2021-2026, OFFIS e.V.
+  *  All rights reserved.  See COPYRIGHT file for details.
+  *
+  *  This software and supporting documentation were partly developed by
+@@ -63,7 +63,15 @@
+     }
+     LST_Destroy(&userInfo->SCUSCPRoleList);
+ 
+-    /* extended negotiation */
++    /* Extended negotiation: the list contents (SOPClassExtendedNegotiationSubItem*)
++     * are intentionally NOT deleted here. On all normal paths the items are
++     * shared (via the shallow appendList()) with the owning service parameter
++     * list (params->{requested,accepted}ExtNegList in DUL_ASSOCIATESERVICEPARAMETERS),
++     * which releases them through DUL_ClearServiceParameters() ->
++     * deleteListMembers(). Callers with no service-side owner (e.g. the
++     * parse-error cleanup in parseAssociate()) must call deleteListMembers()
++     * themselves before invoking this function.
++     */
+     delete userInfo->extNegList;
+     userInfo->extNegList = NULL;
+ 
diff -Nru dcmtk-3.6.9/debian/patches/0022-CVE-2026-35505.patch dcmtk-3.6.9/debian/patches/0022-CVE-2026-35505.patch
--- dcmtk-3.6.9/debian/patches/0022-CVE-2026-35505.patch	1970-01-01 01:00:00.000000000 +0100
+++ dcmtk-3.6.9/debian/patches/0022-CVE-2026-35505.patch	2026-07-07 20:01:09.000000000 +0200
@@ -0,0 +1,509 @@
+Applied-Upstream: 2312891a8d058c862e00bcbd636e5da26308658a
+Author: Michael Onken <onken at open-connections.de>
+Last-Update: 2026-05-29
+Description: Fix A-ASSOCIATE-RQ/AC error-path leaks in DUL FSM.
+ AE_3_AssociateConfirmationAccept and AE_6_ExamineAssociateRequest leaked
+ the whole parsed PDU graph (presentation contexts, transfer syntax
+ sub-chains, role list, user info) on error returns taken after
+ parseAssociate() succeeded, since only the success path freed it. For an
+ SCP this is remotely triggerable and accumulates per connection.
+ .
+ Free the parsed PDU before each such return;
+ translatePresentationContextList() also frees the proposed transfer
+ syntax list of a rejected context. Add a dcmnet regression test
+ (tassocleak.cc) driving the AE_6 zero-transfer-syntax path against an
+ in-process DcmSCP; leak-clean with the fix under DCMTK_WITH_SANITIZERS.
+ .
+ Thanks for the report and analysis to Abhinav Agarwal.
+ .
+ This closes DCMTK issue #1217.
+Reviewed-By: ?tienne Mollier <emollier at debian.org>
+Bug-Debian: https://bugs.debian.org/1141411
+
+--- dcmtk.orig/dcmnet/libsrc/dulfsm.cc
++++ dcmtk/dcmnet/libsrc/dulfsm.cc
+@@ -971,14 +971,26 @@
+         OFStandard::strlcpy(service->callingAPTitle, assoc.callingAPTitle, sizeof(service->callingAPTitle));
+         OFStandard::strlcpy(service->applicationContextName, assoc.applicationContext.data, sizeof(service->applicationContextName));
+ 
+-        if ((service->acceptedPresentationContext = LST_Create()) == NULL) return EC_MemoryExhausted;
++        if ((service->acceptedPresentationContext = LST_Create()) == NULL)
++        {
++            /* free memory allocated by parseAssociate() before returning */
++            destroyAssociatePDUPresentationContextList(&assoc.presentationContextList);
++            destroyUserInformationLists(&assoc.userInfo);
++            return EC_MemoryExhausted;
++        }
+ 
+         prvCtx = (PRV_PRESENTATIONCONTEXTITEM*)LST_Head(&assoc.presentationContextList);
+         if (prvCtx != NULL)
+             (void) LST_Position(&assoc.presentationContextList, (LST_NODE*)prvCtx);
+         while (prvCtx != NULL) {
+             userPresentationCtx = (DUL_PRESENTATIONCONTEXT*)malloc(sizeof(DUL_PRESENTATIONCONTEXT));
+-            if (userPresentationCtx == NULL) return EC_MemoryExhausted;
++            if (userPresentationCtx == NULL)
++            {
++                /* free memory allocated by parseAssociate() before returning */
++                destroyAssociatePDUPresentationContextList(&assoc.presentationContextList);
++                destroyUserInformationLists(&assoc.userInfo);
++                return EC_MemoryExhausted;
++            }
+ 
+             (void) memset(userPresentationCtx, 0, sizeof(DUL_PRESENTATIONCONTEXT));
+             userPresentationCtx->result = prvCtx->result;
+@@ -1011,6 +1023,9 @@
+               char buf1[256];
+               OFStandard::snprintf(buf1, sizeof(buf1), "DUL Peer supplied illegal number of transfer syntaxes (%d)", 0);
+               free(userPresentationCtx);
++              /* free memory allocated by parseAssociate() before returning */
++              destroyAssociatePDUPresentationContextList(&assoc.presentationContextList);
++              destroyUserInformationLists(&assoc.userInfo);
+               return makeDcmnetCondition(DULC_PEERILLEGALXFERSYNTAXCOUNT, OF_error, buf1);
+             }
+ 
+@@ -1019,6 +1034,9 @@
+               char buf2[256];
+               OFStandard::snprintf(buf2, sizeof(buf2), "DUL Peer supplied illegal number of transfer syntaxes (%ld)", LST_Count(&prvCtx->transferSyntaxList));
+               free(userPresentationCtx);
++              /* free memory allocated by parseAssociate() before returning */
++              destroyAssociatePDUPresentationContextList(&assoc.presentationContextList);
++              destroyUserInformationLists(&assoc.userInfo);
+               return makeDcmnetCondition(DULC_PEERILLEGALXFERSYNTAXCOUNT, OF_error, buf2);
+             }
+             subItem = (DUL_SUBITEM*)LST_Head(&prvCtx->transferSyntaxList);
+@@ -1041,7 +1059,13 @@
+          */
+         if (assoc.userInfo.extNegList != NULL) {
+             service->acceptedExtNegList = new SOPClassExtendedNegotiationSubItemList;
+-            if (service->acceptedExtNegList == NULL)  return EC_MemoryExhausted;
++            if (service->acceptedExtNegList == NULL)
++            {
++                /* free memory allocated by parseAssociate() before returning */
++                destroyAssociatePDUPresentationContextList(&assoc.presentationContextList);
++                destroyUserInformationLists(&assoc.userInfo);
++                return EC_MemoryExhausted;
++            }
+             appendList(*assoc.userInfo.extNegList, *service->acceptedExtNegList);
+         }
+ 
+@@ -1049,7 +1073,13 @@
+         if (assoc.userInfo.usrIdent != NULL) {
+           service->ackUserIdentNeg =
+             new UserIdentityNegotiationSubItemAC( *(OFstatic_cast(UserIdentityNegotiationSubItemAC*, assoc.userInfo.usrIdent)));
+-          if (service->ackUserIdentNeg == NULL)  return EC_MemoryExhausted;
++          if (service->ackUserIdentNeg == NULL)
++          {
++              /* free memory allocated by parseAssociate() before returning */
++              destroyAssociatePDUPresentationContextList(&assoc.presentationContextList);
++              destroyUserInformationLists(&assoc.userInfo);
++              return EC_MemoryExhausted;
++          }
+ 
+         }
+ 
+@@ -1234,11 +1264,20 @@
+         OFStandard::strlcpy(service->callingAPTitle, assoc.callingAPTitle, sizeof(service->callingAPTitle));
+         OFStandard::strlcpy(service->applicationContextName, assoc.applicationContext.data, sizeof(service->applicationContextName));
+ 
+-        if ((service->requestedPresentationContext = LST_Create()) == NULL) return EC_MemoryExhausted;
++        if ((service->requestedPresentationContext = LST_Create()) == NULL)
++        {
++            /* free memory allocated by parseAssociate() before returning */
++            destroyAssociatePDUPresentationContextList(&assoc.presentationContextList);
++            destroyUserInformationLists(&assoc.userInfo);
++            return EC_MemoryExhausted;
++        }
+         if (translatePresentationContextList(&assoc.presentationContextList,
+                                              &assoc.userInfo.SCUSCPRoleList,
+                                              &service->requestedPresentationContext).bad())
+         {
++            /* free memory allocated by parseAssociate() before returning */
++            destroyAssociatePDUPresentationContextList(&assoc.presentationContextList);
++            destroyUserInformationLists(&assoc.userInfo);
+             return DUL_PCTRANSLATIONFAILURE;
+         }
+ 
+@@ -1252,14 +1291,26 @@
+          */
+         if (assoc.userInfo.extNegList != NULL) {
+             service->requestedExtNegList = new SOPClassExtendedNegotiationSubItemList;
+-            if (service->requestedExtNegList == NULL) return EC_MemoryExhausted;
++            if (service->requestedExtNegList == NULL)
++            {
++                /* free memory allocated by parseAssociate() before returning */
++                destroyAssociatePDUPresentationContextList(&assoc.presentationContextList);
++                destroyUserInformationLists(&assoc.userInfo);
++                return EC_MemoryExhausted;
++            }
+             appendList(*assoc.userInfo.extNegList, *service->requestedExtNegList);
+         }
+ 
+         /* user identity negotiation: Remember request values in association parameters (copy)*/
+         if (assoc.userInfo.usrIdent != NULL) {
+           service->reqUserIdentNeg = new UserIdentityNegotiationSubItemRQ();
+-          if (service->reqUserIdentNeg == NULL) return EC_MemoryExhausted;
++          if (service->reqUserIdentNeg == NULL)
++          {
++              /* free memory allocated by parseAssociate() before returning */
++              destroyAssociatePDUPresentationContextList(&assoc.presentationContextList);
++              destroyUserInformationLists(&assoc.userInfo);
++              return EC_MemoryExhausted;
++          }
+             *(service->reqUserIdentNeg) = *(OFstatic_cast(UserIdentityNegotiationSubItemRQ*,assoc.userInfo.usrIdent));
+         }
+ 
+@@ -3947,6 +3998,8 @@
+         {
+             char buf1[256];
+             OFStandard::snprintf(buf1, sizeof(buf1), "DUL Peer supplied illegal number of transfer syntaxes (%d)", 0);
++            /* free the (empty) transfer syntax list allocated for this context above */
++            LST_Destroy(&userContext->proposedTransferSyntax);
+             free(userContext);
+             return makeDcmnetCondition(DULC_PEERILLEGALXFERSYNTAXCOUNT, OF_error, buf1);
+         }
+--- dcmtk.orig/dcmnet/tests/CMakeLists.txt
++++ dcmtk/dcmnet/tests/CMakeLists.txt
+@@ -1,5 +1,6 @@
+ # declare executables
+ DCMTK_ADD_TEST_EXECUTABLE(dcmnet_tests
++  tassocleak.cc
+   tdimse.cc
+   tdump.cc
+   tests.cc
+--- dcmtk.orig/dcmnet/tests/Makefile.in
++++ dcmtk/dcmnet/tests/Makefile.in
+@@ -25,7 +25,7 @@
+ LOCALLIBS = -ldcmnet -ldcmdata -loflog -lofstd -loficonv $(ZLIBLIBS) \
+ 	$(TCPWRAPPERLIBS) $(CHARCONVLIBS) $(MATHLIBS)
+ 
+-objs = tests.o tdump.o tdimse.o tpool.o tscuscp.o tscusession.o
++objs = tests.o tdump.o tdimse.o tassocleak.o tpool.o tscuscp.o tscusession.o
+ progs = tests
+ 
+ 
+--- /dev/null
++++ dcmtk/dcmnet/tests/tassocleak.cc
+@@ -0,0 +1,312 @@
++/*
++ *
++ *  Copyright (C) 2026, OFFIS e.V.
++ *  All rights reserved.  See COPYRIGHT file for details.
++ *
++ *  This software and supporting documentation were developed by
++ *
++ *    OFFIS e.V.
++ *    R&D Division Health
++ *    Escherweg 2
++ *    D-26121 Oldenburg, Germany
++ *
++ *
++ *  Module:  dcmnet
++ *
++ *  Author:  Michael Onken
++ *
++ *  Purpose: Integration regression tests that drive an in-process DcmSCP with
++ *           hand-crafted A-ASSOCIATE-RQ PDUs. They exercise the receiver-side
++ *           association request handling on malformed input that a conformant
++ *           DCMTK requestor (DcmSCU / the ASC_* API) would refuse to put on
++ *           the wire. Built with DCMTK_WITH_SANITIZERS=ON these tests double
++ *           as memory-error / leak regression tests for the DUL association
++ *           parsing and translation code paths.
++ *
++ */
++
++
++#include "dcmtk/config/osconfig.h"    /* make sure OS specific configuration is included first */
++
++#ifdef WITH_THREADS
++
++#include "dcmtk/ofstd/oftest.h"
++#include "dcmtk/ofstd/ofstd.h"        /* for OFStandard::initializeNetwork() */
++#include "dcmtk/ofstd/ofthread.h"     /* for OFThread */
++#include "dcmtk/dcmnet/scp.h"
++#include "dcmtk/dcmnet/dcmtrans.h"    /* for DcmTCPConnection */
++#include "dcmtk/dcmnet/dcompat.h"     /* for platform socket headers */
++#include "dcmtk/dcmnet/dulstruc.h"    /* DUL_TYPE* constants, DUL_PROTOCOL */
++#include "dcmtk/dcmnet/dul.h"
++
++
++/* --------------------------------------------------------------------------
++ *  Minimal in-process SCP that accepts exactly one association attempt and
++ *  then returns. The DUL state machine (and therefore the association request
++ *  parsing/translation) runs inside ASC_receiveAssociation() before the SCP
++ *  gets a chance to accept or reject, so it suffices to let the SCP try to
++ *  receive a single association.
++ * ------------------------------------------------------------------------ */
++struct OneShotReceiverSCP : DcmSCP, OFThread
++{
++    OneShotReceiverSCP()
++        : DcmSCP()
++        , m_listen_result(EC_NotYetImplemented)
++        , m_portNum(0)
++    {
++        DcmSCPConfig& config = getConfig();
++        config.setAETitle("RECV_SCP");
++        // Non-blocking accept with a short connection timeout, so the accept
++        // loop cannot get stuck if a (future) malformed PDU leaves the SCP
++        // waiting on a partial read, or if no client connects at all. For the
++        // normal flow the client connects immediately, so this timeout is not
++        // hit and adds no delay.
++        config.setConnectionBlockingMode(DUL_NOBLOCK);
++        config.setConnectionTimeout(2 /* seconds */);
++        config.setHostLookupEnabled(OFFalse);
++        config.setPort(0); // OS chooses a free port
++        OFList<OFString> xfers;
++        xfers.push_back(UID_LittleEndianImplicitTransferSyntax);
++        OFCHECK(config.addPresentationContext(UID_VerificationSOPClass, xfers).good());
++        OFCHECK(openListenPort().good());
++        m_portNum = config.getPort();
++    }
++
++    /** Stop the accept loop after the single association attempt has been
++     *  handled, so the SCP thread returns and can be joined.
++     */
++    virtual OFBool stopAfterCurrentAssociation()
++    {
++        return OFTrue;
++    }
++
++    /** Also stop if the connection timeout elapses without any association
++     *  request. Together with the non-blocking mode above this guarantees the
++     *  accept loop terminates even if no client ever connects, so a stuck test
++     *  fails fast (via join()) instead of hanging.
++     */
++    virtual OFBool stopAfterConnectionTimeout()
++    {
++        return OFTrue;
++    }
++
++    virtual void run()
++    {
++        m_listen_result = acceptAssociations();
++    }
++
++    OFCondition m_listen_result;
++    Uint16 m_portNum;
++};
++
++
++/* Write a 16-bit big-endian value into buf and advance the cursor. */
++static void put_u16_be(unsigned char *&p, unsigned short v)
++{
++    *p++ = OFstatic_cast(unsigned char, (v >> 8) & 0xff);
++    *p++ = OFstatic_cast(unsigned char, v & 0xff);
++}
++
++/* Write a 32-bit big-endian value into buf and advance the cursor. */
++static void put_u32_be(unsigned char *&p, unsigned long v)
++{
++    *p++ = OFstatic_cast(unsigned char, (v >> 24) & 0xff);
++    *p++ = OFstatic_cast(unsigned char, (v >> 16) & 0xff);
++    *p++ = OFstatic_cast(unsigned char, (v >> 8) & 0xff);
++    *p++ = OFstatic_cast(unsigned char, v & 0xff);
++}
++
++/* Write a sub-item header (type + reserved + 2-byte big-endian length) and
++ * advance the cursor. */
++static void put_subitem_header(unsigned char *&p, unsigned char type, unsigned short bodyLen)
++{
++    *p++ = type;
++    *p++ = 0x00;
++    put_u16_be(p, bodyLen);
++}
++
++
++/* Open a blocking TCP connection to 127.0.0.1:port. Sending and
++ * tearing the connection down is done via DcmTCPConnection so the test needs
++ * no platform-specific socket code. Returns an invalid socket on failure. */
++static DcmNativeSocketType connect_loopback(Uint16 port)
++{
++    DcmNativeSocketType sock = socket(AF_INET, SOCK_STREAM, 0);
++    if (sock == OFstatic_cast(DcmNativeSocketType, -1))
++        return sock;
++
++    struct sockaddr_in addr;
++    memset(&addr, 0, sizeof(addr));
++    addr.sin_family = AF_INET;
++    addr.sin_port = htons(port);
++    addr.sin_addr.s_addr = htonl(INADDR_LOOPBACK);
++
++    if (connect(sock, OFreinterpret_cast(struct sockaddr*, &addr), sizeof(addr)) != 0)
++        return OFstatic_cast(DcmNativeSocketType, -1);
++    return sock;
++}
++
++
++/* Build an A-ASSOCIATE-RQ PDU whose single presentation context contains an
++ * Abstract Syntax sub-item (Verification SOP Class) but NO Transfer Syntax
++ * sub-items. The PDU is otherwise well-formed: Application Context item +
++ * User Information item with Maximum Length and Implementation Class UID
++ * sub-items.
++ *
++ * We cannot use the existing C++/C API to construct this since in DCMTK
++ * it is protected not to run any Presentation Contexts with 0 transfer
++ * syntaxes.
++ *
++ * @param  outLen  receives the total PDU length on the wire (incl. preamble)
++ * @return heap-allocated buffer (caller frees with delete[])
++ */
++static unsigned char* build_zero_ts_assoc_rq(unsigned long &outLen)
++{
++    const char *appCtx       = "1.2.840.10008.3.1.1.1";  // DICOM Application Context
++    const char *abstractStx  = "1.2.840.10008.1.1";      // Verification SOP Class
++    const char *implClassUID = "1.2.276.0.7230010.3.0.3.6.0"; // random digits
++
++    const unsigned short appCtxLen   = OFstatic_cast(unsigned short, strlen(appCtx));
++    const unsigned short abstractLen = OFstatic_cast(unsigned short, strlen(abstractStx));
++    const unsigned short implLen     = OFstatic_cast(unsigned short, strlen(implClassUID));
++
++    // Sub-PDU sizes (4-byte header + body).
++    const unsigned long appCtxItem    = 4 + appCtxLen;
++    const unsigned long abstractItem  = 4 + abstractLen;
++    // Presentation Context body = ctxID + 3 reserved + abstract syntax item.
++    const unsigned long pcBody        = 4 + abstractItem;
++    const unsigned long pcItem        = 4 + pcBody;
++    const unsigned long maxLenItem    = 4 + 4;            // Max Length sub-item (body = 4-byte maxPDU)
++    const unsigned long implItem      = 4 + implLen;      // Implementation Class UID sub-item
++    const unsigned long userInfoBody  = maxLenItem + implItem;
++    const unsigned long userInfoItem  = 4 + userInfoBody;
++
++    // Fixed A-ASSOCIATE-RQ header before variable items:
++    //   protocol(2) + reserved(2) + calledAE(16) + callingAE(16) + reserved(32) = 68
++    const unsigned long fixedAfterLen = 2 + 2 + 16 + 16 + 32;
++    const unsigned long variableItems = appCtxItem + pcItem + userInfoItem;
++
++    // PDU length field counts everything AFTER the 6-byte preamble
++    // (type + reserved + 4-byte length), i.e. the fixed header plus items.
++    const unsigned long pduPayloadLen = fixedAfterLen + variableItems;
++    const unsigned long totalLen      = 6 + pduPayloadLen;
++
++    unsigned char *buf = new unsigned char[totalLen];
++    unsigned char *p = buf;
++
++    // PDU preamble.
++    *p++ = DUL_TYPEASSOCIATERQ;  // 0x01
++    *p++ = 0x00;                 // reserved
++    put_u32_be(p, pduPayloadLen);
++
++    // Fixed header.
++    put_u16_be(p, DUL_PROTOCOL); // protocol version
++    *p++ = 0x00; *p++ = 0x00;    // reserved
++    {
++        const char *calledAE  = "RECV_SCP        "; // 16 bytes, space padded
++        const char *callingAE = "SEND_SCU        "; // 16 bytes, space padded
++        for (int i = 0; i < 16; ++i) *p++ = OFstatic_cast(unsigned char, calledAE[i]);
++        for (int i = 0; i < 16; ++i) *p++ = OFstatic_cast(unsigned char, callingAE[i]);
++    }
++    for (int i = 0; i < 32; ++i) *p++ = 0x00; // reserved
++
++    // Application Context item.
++    put_subitem_header(p, DUL_TYPEAPPLICATIONCONTEXT, appCtxLen);
++    for (unsigned short i = 0; i < appCtxLen; ++i) *p++ = OFstatic_cast(unsigned char, appCtx[i]);
++
++    // Presentation Context item (with abstract syntax, NO transfer syntax).
++    put_subitem_header(p, DUL_TYPEPRESENTATIONCONTEXTRQ, OFstatic_cast(unsigned short, pcBody));
++    *p++ = 0x01;  // presentation context ID (odd, as required)
++    *p++ = 0x00;  // reserved
++    *p++ = 0x00;  // reserved (result/reason, unused in RQ)
++    *p++ = 0x00;  // reserved
++    //   Abstract Syntax sub-item.
++    put_subitem_header(p, DUL_TYPEABSTRACTSYNTAX, abstractLen);
++    for (unsigned short i = 0; i < abstractLen; ++i) *p++ = OFstatic_cast(unsigned char, abstractStx[i]);
++    //   (intentionally no Transfer Syntax sub-item)
++
++    // User Information item.
++    put_subitem_header(p, DUL_TYPEUSERINFO, OFstatic_cast(unsigned short, userInfoBody));
++    //   Maximum Length sub-item (body = 4-byte maximum PDU length).
++    put_subitem_header(p, DUL_TYPEMAXLENGTH, 4);
++    put_u32_be(p, 16384);
++    //   Implementation Class UID sub-item.
++    put_subitem_header(p, DUL_TYPEIMPLEMENTATIONCLASSUID, implLen);
++    for (unsigned short i = 0; i < implLen; ++i) *p++ = OFstatic_cast(unsigned char, implClassUID[i]);
++
++    OFCHECK_EQUAL(OFstatic_cast(unsigned long, p - buf), totalLen);
++    outLen = totalLen;
++    return buf;
++}
++
++
++/* Regression test for two leaks on the receiver-side handling of an
++ * A-ASSOCIATE-RQ whose single presentation context carries an Abstract Syntax
++ * but ZERO Transfer Syntaxes:
++ *
++ *   1. parseAssociate() succeeds, then translatePresentationContextList()
++ *      rejects the context with an illegal transfer-syntax count and
++ *      AE_6_ExamineAssociateRequest() returns DUL_PCTRANSLATIONFAILURE. The
++ *      already-parsed PRV_ASSOCIATEPDU (presentation context + user
++ *      information lists) must be freed on that error path.
++ *   2. translatePresentationContextList() itself must free the (empty)
++ *      proposedTransferSyntax list it allocated for the rejected context.
++ *
++ * Both leaks are tracked in DCMTK issue #1217.
++ *
++ * A conformant DCMTK requestor cannot emit a zero-transfer-syntax context
++ * (ASC_addPresentationContext rejects it), so the malicious PDU is crafted by
++ * hand and sent over a raw TCP connection to an in-process DcmSCP. The leaks
++ * are asserted implicitly by LeakSanitizer at process exit (build with
++ * DCMTK_WITH_SANITIZERS=ON on Linux); the OFCHECKs below only assert the
++ * harness behaved (socket connected, send succeeded, SCP thread joined).
++ */
++OFTEST(dcmnet_scp_assocRQ_zeroTransferSyntax_no_leak)
++{
++    OFStandard::initializeNetwork();
++
++    OneShotReceiverSCP scp;
++    // The listen socket is already bound and listening (openListenPort() runs
++    // in the SCP constructor), so a client connect() succeeds via the TCP
++    // backlog even before the accept thread is scheduled -- no startup sleep
++    // is needed here.
++    scp.start();
++
++    DcmNativeSocketType sock = connect_loopback(scp.m_portNum);
++    OFCHECK(sock != OFstatic_cast(DcmNativeSocketType, -1));
++
++    if (sock != OFstatic_cast(DcmNativeSocketType, -1))
++    {
++        DcmTCPConnection conn(sock); // takes ownership of the socket
++
++        unsigned long pduLen = 0;
++        unsigned char *pdu = build_zero_ts_assoc_rq(pduLen);
++
++        // Send the hand-built A-ASSOCIATE-RQ. This drives the SCP through
++        // parseAssociate() + translatePresentationContextList() (the original leak path).
++        unsigned long sent = 0;
++        OFBool sendOk = OFTrue;
++        while (sent < pduLen)
++        {
++            ssize_t n = conn.write(pdu + sent, OFstatic_cast(size_t, pduLen - sent));
++            if (n <= 0) { sendOk = OFFalse; break; }
++            sent += OFstatic_cast(unsigned long, n);
++        }
++        OFCHECK(sendOk);
++
++        // Close immediately after sending instead of reading a response. The
++        // buffered PDU is still delivered to the SCP before the FIN, so it
++        // reaches the leak path; the FIN then unblocks the SCP's receive call
++        // at once. Reading here would instead leave both ends blocked on each
++        // other until the socket receive timeout (dcmSocketReceiveTimeout,
++        // 60s by default) expired -- which made this test take ~63s.
++        delete[] pdu;
++        conn.close();
++    }
++
++    // Wait for the SCP thread to finish handling the (failed) association.
++    const int joinResult = scp.join();
++    OFCHECK(joinResult != OFThread::busy);
++}
++
++#endif // WITH_THREADS
+--- dcmtk.orig/dcmnet/tests/tests.cc
++++ dcmtk/dcmnet/tests/tests.cc
+@@ -51,6 +51,8 @@
+ OFTEST_REGISTER(dcmnet_scu_sendNSETRequest_succeeds_and_modifies_instance_when_scp_has_instance);
+ OFTEST_REGISTER(dcmnet_scu_sendNSETRequest_succeeds_and_sets_responsestatuscode_from_scp_when_scp_sets_error_status);
+ 
++OFTEST_REGISTER(dcmnet_scp_assocRQ_zeroTransferSyntax_no_leak);
++
+ #endif // WITH_THREADS
+ 
+ OFTEST_MAIN("dcmnet")
diff -Nru dcmtk-3.6.9/debian/patches/0023-CVE-2026-52868.patch dcmtk-3.6.9/debian/patches/0023-CVE-2026-52868.patch
--- dcmtk-3.6.9/debian/patches/0023-CVE-2026-52868.patch	1970-01-01 01:00:00.000000000 +0100
+++ dcmtk-3.6.9/debian/patches/0023-CVE-2026-52868.patch	2026-07-07 20:03:29.000000000 +0200
@@ -0,0 +1,746 @@
+commit e3878daf870cd2db50eadfde38615f0afae8a584
+Author: Michael Onken <onken at open-connections.de>
+Date:   Tue May 19 17:16:08 2026 +0200
+
+    Fix path traversal in wlmscpfs through Called AET.
+    
+    The wlmscpfs SCP appended the Called Application Entity Title received
+    in the A-ASSOCIATE-RQ directly onto the configured worklist data file
+    path and used the existence of the resulting directory as an access
+    control decision. Because DICOM VR AE permits the characters "/", "\"
+    and ".", a peer could send a 16-byte AE title such as "../secret/VICTIM"
+    and have wlmscpfs serve worklist records from a sibling directory of
+    the configured root. With option --request-file-path enabled, the same
+    AE title (and the Patient ID) was substituted into the output filename
+    template without sanitization, producing an arbitrary-location write
+    primitive outside the configured request file directory.
+    
+    This commit closes both holes:
+    
+    - wlmscpfs now rejects any A-ASSOCIATE-RQ whose Called AE title is not
+      safe to use as a single filesystem path component, refusing the
+      association with WLM_BAD_AE_SERVICE. The validation is implemented in
+      the new static method WlmFileSystemInteractionManager::IsValidAETitle\
+      ForFilesystem, which rejects empty or over-long titles, any title
+      containing a dot, and delegates the remaining character check to
+      OFStandard::sanitizeAETitle (sanitize-and-compare).
+    
+    - The placeholder substitution in storeRequestToFile now passes each
+      substituted value (#a, #c, #p) through OFStandard::sanitizeAETitle
+      before insertion, and additionally sanitizes the final filename, so
+      that any path separator surviving the substitution is defanged.
+    
+    Supporting changes:
+    
+    - Promote storescp's private sanitizeAETitle helper into the public
+      OFStandard::sanitizeAETitle, with documentation noting that the
+      function is also used by wlmscpfs to validate filesystem path
+      components (so widening the allow list has downstream effects).
+    - Replace storescp's local copy of the helper with the new public one.
+    - Add a forward declaration of DcmSequenceOfItems in wlfsim.h that
+      was previously missing (existing callers happened to include dctk.h
+      first).
+    - Document the new behaviour in the wlmscpfs man page.
+    
+    Tests:
+    
+    - New ofstd_OFStandard_sanitizeAETitle test covers the lifted helper
+      (path separators, NUL, control bytes, high-range bytes, shell
+      metacharacters, the quotation-mark preservation behaviour, and
+      empty/length-1 edge cases).
+    - New dcmwlm_aetitle_validation test covers the validator directly
+      with every path-traversal payload from the bug report ("../secret/\
+      VICTIM", "../CARDIOLOGY", "..", ".", "..\secret"), dotted variants
+      ("MY.AE", "foo..bar", ".foo", "foo."), structural rejections (empty,
+      17 bytes, embedded NUL, tab, 0xFF), shell metacharacters, and a row
+      of legitimate AE titles that must still be accepted.
+    - dcmwlm previously had no OFTEST scaffolding; tests.cc has been added
+      along with the corresponding CMakeLists.txt and Makefile.in entries.
+    
+    Thanks to Abhinav Agarwal for the report.
+
+--- dcmtk.orig/dcmnet/apps/storescp.cc
++++ dcmtk/dcmnet/apps/storescp.cc
+@@ -98,7 +98,6 @@
+ static OFString replaceChars( const OFString &srcstr, const OFString &pattern, const OFString &substitute );
+ static void executeCommand( const OFString &cmd );
+ static void cleanChildren(pid_t pid, OFBool synch);
+-static void sanitizeAETitle(OFString& aet);
+ static OFCondition acceptUnknownContextsWithPreferredTransferSyntaxes(
+          T_ASC_Parameters * params,
+          const char* transferSyntaxes[],
+@@ -2230,34 +2229,6 @@
+   lastStudySubdirectoryPathAndName.clear();
+ }
+ 
+-/* replace all characters that might be interpreted by the shell with underscores
+- */
+-static void sanitizeAETitle(OFString& aet)
+-{
+-  static const char sanitized_aetitle_charset[] =
+-  {
+-    ' ', '_', '_', '_', '_', '_', '_', '_', '_', '_', '_', '_', '_', '-', '.', '_',
+-    '0', '1', '2', '3', '4', '5', '6', '7', '8', '9', ':', '_', '_', '_', '_', '_',
+-    '@', 'A', 'B', 'C', 'D', 'E', 'F', 'G', 'H', 'I', 'J', 'K', 'L', 'M', 'N', 'O',
+-    'P', 'Q', 'R', 'S', 'T', 'U', 'V', 'W', 'X', 'Y', 'Z', '_', '_', '_', '_', '_',
+-    '_', 'a', 'b', 'c', 'd', 'e', 'f', 'g', 'h', 'i', 'j', 'k', 'l', 'm', 'n', 'o',
+-    'p', 'q', 'r', 's', 't', 'u', 'v', 'w', 'x', 'y', 'z', '_', '_', '_', '_', '_'
+-  };
+-
+-  // the aet string starts and ends with quotation marks. We ignore these.
+-  size_t len = aet.length();
+-  if (len < 3) return;
+-
+-  char c;
+-  --len;
+-  for (size_t i=1; i < len; ++i)
+-  {
+-    c = aet[i];
+-    if (c != 0 && (c < 32 || c >= 127)) c = '_'; else c = sanitized_aetitle_charset[c-32];
+-    aet[i] = c;
+-  }
+-}
+-
+ static void executeOnReception()
+     /*
+      * This function deals with the execution of the command line which was passed
+@@ -2293,7 +2264,7 @@
+   // perform substitution for placeholder #a.
+   // Note that this string is already enclosed in double quotes at this point
+   s = callingAETitle;
+-  sanitizeAETitle(s);
++  OFStandard::sanitizeAETitle(s);
+   if (s != callingAETitle)
+   {
+     OFLOG_WARN(storescpLogger, "Sanitized unusual characters in calling aetitle, converted from " << callingAETitle << " to " << s << ".");
+@@ -2303,7 +2274,7 @@
+   // perform substitution for placeholder #c.
+   // Note that this string is already enclosed in double quotes at this point
+   s = calledAETitle;
+-  sanitizeAETitle(s);
++  OFStandard::sanitizeAETitle(s);
+   if (s != calledAETitle)
+   {
+     OFLOG_WARN(storescpLogger, "Sanitized unusual characters in called aetitle, converted from " << calledAETitle << " to " << s << ".");
+@@ -2313,7 +2284,7 @@
+   // perform substitution for placeholder #r.
+   // Note that this string is already enclosed in double quotes at this point
+   s = callingPresentationAddress;
+-  sanitizeAETitle(s);
++  OFStandard::sanitizeAETitle(s);
+   if (s != callingPresentationAddress)
+   {
+     OFLOG_WARN(storescpLogger, "Sanitized unusual characters in calling presentation address, converted from " << callingPresentationAddress << " to " << s << ".");
+@@ -2429,7 +2400,7 @@
+   // perform substitution for placeholder #a.
+   // Note that this string is already enclosed in double quotes at this point
+   s = callingAETitle;
+-  sanitizeAETitle(s);
++  OFStandard::sanitizeAETitle(s);
+   if (s != callingAETitle)
+   {
+     OFLOG_WARN(storescpLogger, "Sanitized unusual characters in calling aetitle, converted from " << callingAETitle << " to " << s << ".");
+@@ -2439,7 +2410,7 @@
+   // perform substitution for placeholder #c.
+   // Note that this string is already enclosed in double quotes at this point
+   s = calledAETitle;
+-  sanitizeAETitle(s);
++  OFStandard::sanitizeAETitle(s);
+   if (s != calledAETitle)
+   {
+     OFLOG_WARN(storescpLogger, "Sanitized unusual characters in called aetitle, converted from " << calledAETitle << " to " << s << ".");
+@@ -2449,7 +2420,7 @@
+   // perform substitution for placeholder #r.
+   // Note that this string is already enclosed in double quotes at this point
+   s = callingPresentationAddress;
+-  sanitizeAETitle(s);
++  OFStandard::sanitizeAETitle(s);
+   if (s != callingPresentationAddress)
+   {
+     OFLOG_WARN(storescpLogger, "Sanitized unusual characters in calling presentation address, converted from " << callingPresentationAddress << " to " << s << ".");
+--- dcmtk.orig/dcmwlm/docs/wlmscpfs.man
++++ dcmtk/dcmwlm/docs/wlmscpfs.man
+@@ -231,6 +231,23 @@
+ Table K.6-1 in part 4 annex K of the DICOM standard lists all corresponding
+ type 1 attributes (see column "Return Key Type").
+ 
++The called Application Entity Title from an incoming A-ASSOCIATE-RQ is used
++as a subdirectory name below the \e --data-file-path directory in order to
++look up the worklist files that this association may access.  The DICOM VR
++AE (see DICOM PS3.5 Section 6.1.3) permits the characters "/" (forward slash)
++and "." (full stop), so a conformant peer can send an AE title such as
++"../OTHER" that would resolve to a sibling directory of the configured
++worklist root.  To prevent this, \b wlmscpfs rejects any A-ASSOCIATE-RQ
++whose called AE title is not safe to use as a single filesystem path
++component.  The set of accepted characters is letters, digits, space and
++the characters "-", ":", "@" and "_"; any other byte (path separators
++"/" and "\\", NUL, control bytes, bytes outside the printable ASCII range,
++shell metacharacters as well as the dot character) causes the association
++to be rejected.  Dots are rejected outright (rather than only the
++standalone components "." and "..") because real-world AE titles never
++contain dots and rejecting the entire character avoids any need to reason
++about platform-specific path normalization corner cases.
++
+ \subsection wlmscpfs_request_files Writing Request Files
+ 
+ Providing option \e --request-file-path enables writing of the incoming C-FIND
+@@ -289,6 +306,13 @@
+ cannot be written successfully or will look broken once written.  Also, an empty
+ Patient ID is used as such, i.e. the \#p will be replaced with an empty string.
+ 
++For security reasons, the values substituted for the placeholders \#a, \#c and
++\#p are sanitized before they are inserted into the resulting file name: path
++separators ("/", "\\") and other characters that are not safe in a file name
++component are replaced with the underscore character ("_").  This prevents
++attacker-controlled values transmitted over the network (called/calling AE
++title, Patient ID) from escaping the configured request file directory.
++
+ \subsection wlmscpfs_dicom_conformance DICOM Conformance
+ 
+ The \b wlmscpfs application supports the following SOP Classes as an SCP:
+--- dcmtk.orig/dcmwlm/include/dcmtk/dcmwlm/wlfsim.h
++++ dcmtk/dcmwlm/include/dcmtk/dcmwlm/wlfsim.h
+@@ -34,6 +34,7 @@
+ class DcmTagKey;
+ class OFCondition;
+ class DcmItem;
++class DcmSequenceOfItems;
+ class OFdirectory_iterator;
+ 
+ /** This class encapsulates data structures and operations for managing
+@@ -199,13 +200,53 @@
+ 
+       /** Checks if the given called application entity title is supported. If this is the case,
+        *  OFTrue will be returned, else OFFalse.
++       *
++       *  The check is performed in two stages. First, the AE title is validated against the
++       *  rules of IsValidAETitleForFilesystem(): titles that contain path separators, embedded
++       *  NUL or other control characters, or any dot character are rejected outright (returning
++       *  OFFalse). This prevents the wire-side AE title from escaping the worklist data file
++       *  path through path traversal. Second, the AE title is appended to the configured
++       *  worklist root path and the resulting directory must exist.
++       *
+        *  @param calledApplicationEntityTitlev The application entity title which shall be checked
+-       *                                       for support. Valid pointer expected.
++       *                                       for support.
+        *  @return OFTrue, if the called application entity title is supported,
+-       *          OFFalse, if the called application entity title is not supported or it is not given.
++       *          OFFalse, if the called application entity title is not supported, not given,
++       *          or rejected because it would not be safe to use as a filesystem path component.
+        */
+     OFBool IsCalledApplicationEntityTitleSupported( const OFString& calledApplicationEntityTitlev );
+ 
++      /** Determines whether the given DICOM Application Entity Title is safe to use as a single
++       *  directory or filename component below the worklist data file path.
++       *
++       *  An AE title is considered safe if and only if all of the following hold:
++       *  - it is not empty and not longer than 16 bytes (the DICOM AE VR length limit),
++       *  - it contains no dot ('.') at all,
++       *  - OFStandard::sanitizeAETitle() would not change any byte of it.
++       *
++       *  The third rule delegates the character-set check to OFStandard::sanitizeAETitle(),
++       *  which is the same allow list used by \b storescp for filename and shell-substitution
++       *  contexts: letters, digits, space and the characters '-', '.', ':', '@', '_' are kept,
++       *  every other byte (path separators '/' and '\\', NUL, control characters, bytes
++       *  outside the printable ASCII range and shell metacharacters) is replaced. If the
++       *  sanitized string differs from the input, the AE title contains at least one such
++       *  unsafe byte and is rejected.
++       *
++       *  Dots are rejected by the explicit second rule even though sanitizeAETitle() keeps
++       *  them. Real-world AE titles never contain dots, and rejecting the entire character
++       *  avoids any need to reason about path normalization corner cases (".", "..", trailing
++       *  dots on Windows etc.).
++       *
++       *  Note that this delegation couples the rule applied here to the allow list inside
++       *  OFStandard::sanitizeAETitle(). If that allow list is widened in the future, the set
++       *  of AE titles accepted as safe filesystem path components widens too, so any change
++       *  to it must consider downstream effects on \b wlmscpfs.
++       *
++       *  @param aeTitle Application Entity Title to validate.
++       *  @return OFTrue if the AE title is safe to use as a path component, OFFalse otherwise.
++       */
++    static OFBool IsValidAETitleForFilesystem( const OFString& aeTitle );
++
+       /** This function determines the records from the Worklist files that match
+        *  the given search mask and returns the number of matching records. Also,
+        *  this function will store the matching records inside the member variable
+--- dcmtk.orig/dcmwlm/libsrc/wlfsim.cc
++++ dcmtk/dcmwlm/libsrc/wlfsim.cc
+@@ -1,6 +1,6 @@
+ /*
+  *
+- *  Copyright (C) 1996-2024, OFFIS e.V.
++ *  Copyright (C) 1996-2026, OFFIS e.V.
+  *  All rights reserved.  See COPYRIGHT file for details.
+  *
+  *  This software and supporting documentation were developed by
+@@ -155,6 +155,32 @@
+ 
+ // ----------------------------------------------------------------------------
+ 
++OFBool WlmFileSystemInteractionManager::IsValidAETitleForFilesystem( const OFString& aeTitle )
++{
++  // Length must be 1..16 (DICOM AE VR limit).
++  if( aeTitle.empty() || aeTitle.length() > 16 )
++    return OFFalse;
++
++  // OFStandard::sanitizeAETitle() keeps '.' in its allow list (the function
++  // is also used in shell-substitution contexts where dots are common in
++  // AE titles), so reject dots explicitly here. Rejecting the entire
++  // character avoids any need to reason about platform-specific path
++  // normalization corner cases (".", "..", trailing dots on Windows etc.).
++  if( aeTitle.find('.') != OFString_npos )
++    return OFFalse;
++
++  // Delegate the remaining character check to OFStandard::sanitizeAETitle().
++  // If the sanitizer would change any byte, the AE title contains characters
++  // that are not safe to use as a single filesystem path component (path
++  // separators, NUL, control bytes, bytes outside the printable ASCII range
++  // and shell metacharacters).
++  OFString sanitized = aeTitle;
++  OFStandard::sanitizeAETitle( sanitized );
++  return ( sanitized == aeTitle ) ? OFTrue : OFFalse;
++}
++
++// ----------------------------------------------------------------------------
++
+ OFBool WlmFileSystemInteractionManager::IsCalledApplicationEntityTitleSupported( const OFString& calledApplicationEntityTitlev )
+ // Date         : July 11, 2002
+ // Author       : Thomas Wilkens
+@@ -168,6 +194,15 @@
+   // copy value
+   calledApplicationEntityTitle = calledApplicationEntityTitlev;
+ 
++  // Reject AE titles that are not safe to use as a filesystem path component.
++  // This guards against path traversal via path separators or "../" segments
++  // smuggled in through the wire-side AE title.
++  if( !IsValidAETitleForFilesystem( calledApplicationEntityTitle ) )
++  {
++    DCMWLM_WARN( "Refusing called AE title because it is not safe to use as a directory name (contains path separators, control characters or is \".\"/\"..\"); rejecting association" );
++    return( OFFalse );
++  }
++
+   // Determine complete path to the files that make up the data source.
+   OFString fullPath( dfPath );
+   if( !fullPath.empty() && fullPath[fullPath.length()-1] != PATH_SEPARATOR )
+--- dcmtk.orig/dcmwlm/libsrc/wlmactmg.cc
++++ dcmtk/dcmwlm/libsrc/wlmactmg.cc
+@@ -1174,10 +1174,19 @@
+ static void storeRequestToFile(DcmDataset& request, const OFString& callingAE, const OFString& calledAE, const OFString& reqFilePath, const OFString& reqFileFormat)
+ {
+   OFString fileName = reqFileFormat;
+-  // Called Application Entity Title
+-  OFStringUtil::replace_all(fileName, WLM_CALLED_AETITLE_PLACEHOLDER, calledAE);
+-  // Calling Application Entity Title
+-  OFStringUtil::replace_all(fileName, WLM_CALLING_AETITLE_PLACEHOLDER, callingAE);
++
++  // Each substituted value is sanitized before being inserted into the
++  // filename template. This prevents the calling/called AE title and the
++  // Patient ID (all originating on the wire) from injecting path
++  // separators or other unsafe characters into the resulting filename
++  // and thereby escaping the configured request file directory.
++  OFString safeCalledAE = calledAE;
++  OFStandard::sanitizeAETitle(safeCalledAE);
++  OFStringUtil::replace_all(fileName, WLM_CALLED_AETITLE_PLACEHOLDER, safeCalledAE);
++
++  OFString safeCallingAE = callingAE;
++  OFStandard::sanitizeAETitle(safeCallingAE);
++  OFStringUtil::replace_all(fileName, WLM_CALLING_AETITLE_PLACEHOLDER, safeCallingAE);
+ 
+   // Process ID
+   int processID = dcmtk::log4cplus::internal::get_process_id();
+@@ -1199,8 +1208,15 @@
+   // Patient ID goes last since it might contain placeholders again (".#x...)"
+   OFString patientID;
+   request.findAndGetOFStringArray(DCM_PatientID, patientID);
++  OFStandard::sanitizeAETitle(patientID);
+   OFStringUtil::replace_all(fileName, WLM_PATIENT_ID_PLACEHOLDER, patientID);
+ 
++  // Defense in depth: also sanitize the fully assembled filename so that
++  // any path separator that survived (for example through interaction
++  // between placeholder substitutions or via the user-supplied format
++  // string itself) is replaced before the file is opened.
++  OFStandard::sanitizeAETitle(fileName);
++
+   // Finally store file
+   STD_NAMESPACE ofstream outputStream;
+   OFString fullPath;
+--- dcmtk.orig/dcmwlm/tests/CMakeLists.txt
++++ dcmtk/dcmwlm/tests/CMakeLists.txt
+@@ -1,5 +1,10 @@
+ # declare executables
+ DCMTK_ADD_TEST_EXECUTABLE(wltest wltest.cc)
++DCMTK_ADD_TEST_EXECUTABLE(dcmwlm_tests tests.cc twlaetval.cc)
+ 
+ # make sure executables are linked to the corresponding libraries
+ DCMTK_TARGET_LINK_MODULES(wltest dcmwlm dcmnet dcmtls dcmdata oflog ofstd)
++DCMTK_TARGET_LINK_MODULES(dcmwlm_tests dcmwlm)
++
++# This macro parses tests.cc and registers all tests
++DCMTK_ADD_TESTS(dcmwlm)
+--- dcmtk.orig/dcmwlm/tests/Makefile.in
++++ dcmtk/dcmwlm/tests/Makefile.in
+@@ -25,19 +25,25 @@
+ LOCALLIBS = -ldcmwlm -ldcmnet -ldcmdata -loflog -lofstd -loficonv $(ZLIBLIBS) \
+ 	$(TCPWRAPPERLIBS) $(CHARCONVLIBS) $(MATHLIBS)
+ 
+-objs = wltest.o
+-progs = wltest
++test_objs = tests.o twlaetval.o
++objs = wltest.o $(test_objs)
++progs = wltest dcmwlm_tests
+ 
+ 
+ all: $(progs)
+ 
+-wltest: $(objs)
+-	$(CXX) $(CXXFLAGS) $(LIBDIRS) $(LDFLAGS) -o $@ $(objs) $(LOCALLIBS) $(LIBS)
++wltest: wltest.o
++	$(CXX) $(CXXFLAGS) $(LIBDIRS) $(LDFLAGS) -o $@ wltest.o $(LOCALLIBS) $(LIBS)
+ 
++dcmwlm_tests: $(test_objs)
++	$(CXX) $(CXXFLAGS) $(LIBDIRS) $(LDFLAGS) -o $@ $(test_objs) $(LOCALLIBS) $(LIBS)
+ 
+-check:
+ 
+-check-exhaustive:
++check: dcmwlm_tests
++	./dcmwlm_tests
++
++check-exhaustive: dcmwlm_tests
++	./dcmwlm_tests -x
+ 
+ 
+ install: all
+--- /dev/null
++++ dcmtk/dcmwlm/tests/tests.cc
+@@ -0,0 +1,27 @@
++/*
++ *
++ *  Copyright (C) 2026, OFFIS e.V.
++ *  All rights reserved.  See COPYRIGHT file for details.
++ *
++ *  This software and supporting documentation were developed by
++ *
++ *    OFFIS e.V.
++ *    R&D Division Health
++ *    Escherweg 2
++ *    D-26121 Oldenburg, Germany
++ *
++ *
++ *  Module:  dcmwlm
++ *
++ *  Author:  Michael Onken
++ *
++ *  Purpose: main test program
++ *
++ */
++
++#include "dcmtk/config/osconfig.h"
++#include "dcmtk/ofstd/oftest.h"
++
++OFTEST_REGISTER(dcmwlm_aetitle_validation);
++
++OFTEST_MAIN("dcmwlm")
+--- /dev/null
++++ dcmtk/dcmwlm/tests/twlaetval.cc
+@@ -0,0 +1,116 @@
++/*
++ *
++ *  Copyright (C) 2026, OFFIS e.V.
++ *  All rights reserved.  See COPYRIGHT file for details.
++ *
++ *  This software and supporting documentation were developed by
++ *
++ *    OFFIS e.V.
++ *    R&D Division Health
++ *    Escherweg 2
++ *    D-26121 Oldenburg, Germany
++ *
++ *
++ *  Module:  dcmwlm
++ *
++ *  Author:  Michael Onken
++ *
++ *  Purpose: Tests for the AE title validation used by the wlmscpfs
++ *           filesystem worklist SCP to guard against path traversal
++ *           through the Called Application Entity Title.
++ *
++ */
++
++#include "dcmtk/config/osconfig.h"
++
++#include "dcmtk/ofstd/oftest.h"
++#include "dcmtk/ofstd/ofstring.h"
++#include "dcmtk/dcmwlm/wlfsim.h"
++
++
++// Helper: build an OFString that contains a single NUL byte in the middle
++// of an otherwise printable AE title. OFString tolerates embedded NUL bytes
++// when constructed from a (pointer, length) pair, which is how a NUL byte
++// could enter wlmscpfs from the wire.
++static OFString aeTitleWithEmbeddedNul()
++{
++    const char raw[] = { 'A', 'B', '\0', 'C', 'D' };
++    return OFString(raw, sizeof(raw));
++}
++
++
++OFTEST(dcmwlm_aetitle_validation)
++{
++    // ----- Path traversal payloads from the original bug report. -----
++    // All of these must be rejected; if any of them is accepted, the
++    // CVE-2026-... path traversal hole is open again.
++
++    // 16-byte payload from the proof of concept ("../secret/VICTIM").
++    OFCHECK(!WlmFileSystemInteractionManager::IsValidAETitleForFilesystem("../secret/VICTIM"));
++
++    // Multi-AET demo ("../CARDIOLOGY").
++    OFCHECK(!WlmFileSystemInteractionManager::IsValidAETitleForFilesystem("../CARDIOLOGY"));
++
++    // Plain parent reference and self reference.
++    OFCHECK(!WlmFileSystemInteractionManager::IsValidAETitleForFilesystem(".."));
++    OFCHECK(!WlmFileSystemInteractionManager::IsValidAETitleForFilesystem("."));
++
++    // Windows-style separator.
++    OFCHECK(!WlmFileSystemInteractionManager::IsValidAETitleForFilesystem("..\\secret"));
++
++    // Leading-dot variants and dots in the middle. None of these are
++    // path-traversal payloads on their own, but we reject any AE title
++    // that contains a dot, see the documentation of
++    // IsValidAETitleForFilesystem() for the rationale.
++    OFCHECK(!WlmFileSystemInteractionManager::IsValidAETitleForFilesystem(".foo"));
++    OFCHECK(!WlmFileSystemInteractionManager::IsValidAETitleForFilesystem("foo."));
++    OFCHECK(!WlmFileSystemInteractionManager::IsValidAETitleForFilesystem("foo..bar"));
++    OFCHECK(!WlmFileSystemInteractionManager::IsValidAETitleForFilesystem("MY.AE"));
++
++    // ----- Other unsafe input. -----
++
++    // Empty AE title.
++    OFCHECK(!WlmFileSystemInteractionManager::IsValidAETitleForFilesystem(""));
++
++    // Too long (17 bytes; the DICOM AE VR allows at most 16).
++    OFCHECK(!WlmFileSystemInteractionManager::IsValidAETitleForFilesystem("ABCDEFGHIJKLMNOPQ"));
++
++    // Embedded NUL byte.
++    OFCHECK(!WlmFileSystemInteractionManager::IsValidAETitleForFilesystem(aeTitleWithEmbeddedNul()));
++
++    // Control character (tab).
++    OFCHECK(!WlmFileSystemInteractionManager::IsValidAETitleForFilesystem("AB\tCD"));
++
++    // High-range byte.
++    {
++        OFString withHigh;
++        withHigh.append("AE", 2);
++        withHigh.append(1, OFstatic_cast(char, 0xFF));
++        OFCHECK(!WlmFileSystemInteractionManager::IsValidAETitleForFilesystem(withHigh));
++    }
++
++    // Shell metacharacters: rejected because
++    // OFStandard::sanitizeAETitle() would replace them.
++    OFCHECK(!WlmFileSystemInteractionManager::IsValidAETitleForFilesystem("AE;rm"));
++    OFCHECK(!WlmFileSystemInteractionManager::IsValidAETitleForFilesystem("AE|cat"));
++    OFCHECK(!WlmFileSystemInteractionManager::IsValidAETitleForFilesystem("AE`id`"));
++    OFCHECK(!WlmFileSystemInteractionManager::IsValidAETitleForFilesystem("AE$VAR"));
++
++    // ----- Legitimate AE titles must still be accepted. -----
++
++    // Plain alphanumeric, mixed case.
++    OFCHECK(WlmFileSystemInteractionManager::IsValidAETitleForFilesystem("WORKLIST"));
++    OFCHECK(WlmFileSystemInteractionManager::IsValidAETitleForFilesystem("CARDIOLOGY"));
++    OFCHECK(WlmFileSystemInteractionManager::IsValidAETitleForFilesystem("MyAE"));
++
++    // Single character (minimum length).
++    OFCHECK(WlmFileSystemInteractionManager::IsValidAETitleForFilesystem("A"));
++
++    // Maximum length (16 bytes).
++    OFCHECK(WlmFileSystemInteractionManager::IsValidAETitleForFilesystem("ABCDEFGHIJKLMNOP"));
++
++    // Conformant punctuation that is also safe as a path component.
++    OFCHECK(WlmFileSystemInteractionManager::IsValidAETitleForFilesystem("MY-AE_1"));
++    OFCHECK(WlmFileSystemInteractionManager::IsValidAETitleForFilesystem("AE at HOST"));
++    OFCHECK(WlmFileSystemInteractionManager::IsValidAETitleForFilesystem("AE:1"));
++}
+--- dcmtk.orig/ofstd/include/dcmtk/ofstd/ofstd.h
++++ dcmtk/ofstd/include/dcmtk/ofstd/ofstd.h
+@@ -1181,6 +1181,44 @@
+      */
+     static void sanitizeFilename(char *fname);
+ 
++    /** sanitize a DICOM Application Entity Title for safe use as a
++     *  substitution value in a filename or in a command line that will
++     *  be passed to a shell.
++     *
++     *  This method maps each byte through an allow list: ASCII letters,
++     *  digits, space and the characters '-', '.', ':', '@', '_' are kept
++     *  unchanged; every other byte (including path separators '/' and
++     *  '\\', NUL, control characters, shell metacharacters and bytes
++     *  outside the printable ASCII range) is replaced by '_'.
++     *
++     *  The aetitle string is expected to be already trimmed (i.e. without
++     *  leading or trailing whitespace). Surrounding quotation marks, if
++     *  present, are preserved unchanged (the first and last byte are not
++     *  rewritten) so that quoted AE titles intended for shell command
++     *  substitution remain quoted.
++     *
++     *  This sanitization is sufficient for preventing shell injection in
++     *  contexts where the AE title is substituted into an already quoted
++     *  command-line argument, and for preventing path separators from
++     *  appearing in filenames. It is NOT sufficient to prevent path
++     *  traversal on its own, because the character '.' is kept and the
++     *  sequence "..", which is a path-relative parent reference on most
++     *  operating systems, is therefore not removed. Callers that
++     *  substitute the result into a filesystem path must reject or
++     *  collapse such sequences explicitly.
++     *
++     *  Note: this function is also used by the wlmscpfs application as
++     *  the basis of its filesystem-path-component validation (an AE title
++     *  is accepted only if sanitizeAETitle() would not change it, in
++     *  addition to an explicit dot rejection). Widening the allow list
++     *  below therefore widens the set of AE titles accepted as worklist
++     *  directory names; any change to it must consider that downstream
++     *  effect.
++     *
++     *  @param aetitle Application Entity Title to be sanitized in place.
++     */
++    static void sanitizeAETitle(OFString& aetitle);
++
+     /** retrieve the name of the default directory for support data.
+      *  On Windows, this method resolves environment variables such as
+      *  \%PROGRAMDATA% in the path, on Posix platforms it just returns
+--- dcmtk.orig/ofstd/libsrc/ofstd.cc
++++ dcmtk/ofstd/libsrc/ofstd.cc
+@@ -3500,6 +3500,42 @@
+ }
+ 
+ 
++// Allow list used by sanitizeAETitle(). Index is (byte - 32), so the
++// table covers the printable ASCII range 0x20..0x7E. Every entry either
++// repeats the input byte (kept) or is '_' (replaced). Kept characters:
++// space, '-', '.', ':', '@', '_' and ASCII letters/digits. All shell
++// metacharacters and path separators map to '_'.
++static const char sanitized_aetitle_charset[] =
++{
++  ' ', '_', '_', '_', '_', '_', '_', '_', '_', '_', '_', '_', '_', '-', '.', '_',
++  '0', '1', '2', '3', '4', '5', '6', '7', '8', '9', ':', '_', '_', '_', '_', '_',
++  '@', 'A', 'B', 'C', 'D', 'E', 'F', 'G', 'H', 'I', 'J', 'K', 'L', 'M', 'N', 'O',
++  'P', 'Q', 'R', 'S', 'T', 'U', 'V', 'W', 'X', 'Y', 'Z', '_', '_', '_', '_', '_',
++  '_', 'a', 'b', 'c', 'd', 'e', 'f', 'g', 'h', 'i', 'j', 'k', 'l', 'm', 'n', 'o',
++  'p', 'q', 'r', 's', 't', 'u', 'v', 'w', 'x', 'y', 'z', '_', '_', '_', '_', '_'
++};
++
++
++void OFStandard::sanitizeAETitle(OFString& aetitle)
++{
++    // Preserve a surrounding pair of quotation marks (used by callers
++    // that substitute the AE title into an already quoted shell argument).
++    size_t len = aetitle.length();
++    size_t start = 0;
++    if (len >= 2 && aetitle[0] == '"' && aetitle[len - 1] == '"')
++    {
++        start = 1;
++        --len;
++    }
++    for (size_t i = start; i < len; ++i)
++    {
++        unsigned char c = OFstatic_cast(unsigned char, aetitle[i]);
++        if (c < 32 || c >= 127) aetitle[i] = '_';
++        else aetitle[i] = sanitized_aetitle_charset[c - 32];
++    }
++}
++
++
+ OFString OFStandard::getDefaultSupportDataDir()
+ {
+ #ifdef HAVE_WINDOWS_H
+--- dcmtk.orig/ofstd/tests/tests.cc
++++ dcmtk/ofstd/tests/tests.cc
+@@ -1,6 +1,6 @@
+ /*
+  *
+- *  Copyright (C) 2011-2024, OFFIS e.V.
++ *  Copyright (C) 2011-2026, OFFIS e.V.
+  *  All rights reserved.  See COPYRIGHT file for details.
+  *
+  *  This software and supporting documentation were developed by
+@@ -48,6 +48,7 @@
+ OFTEST_REGISTER(ofstd_OFStandard_isReadWriteable);
+ OFTEST_REGISTER(ofstd_OFStandard_appendFilenameExtension);
+ OFTEST_REGISTER(ofstd_OFStandard_removeRootDirFromPathname);
++OFTEST_REGISTER(ofstd_OFStandard_sanitizeAETitle);
+ OFTEST_REGISTER(ofstd_OFFile);
+ OFTEST_REGISTER(ofstd_OFString_compare);
+ OFTEST_REGISTER(ofstd_OFString_concatenate);
+--- dcmtk.orig/ofstd/tests/tofstd.cc
++++ dcmtk/ofstd/tests/tofstd.cc
+@@ -1,6 +1,6 @@
+ /*
+  *
+- *  Copyright (C) 2002-2022, OFFIS e.V.
++ *  Copyright (C) 2002-2026, OFFIS e.V.
+  *  All rights reserved.  See COPYRIGHT file for details.
+  *
+  *  This software and supporting documentation were developed by
+@@ -373,6 +373,62 @@
+     OFCHECK(OFStandard::removeRootDirFromPathname(result, nullPtr, nullPtr).good());
+ }
+ 
++OFTEST(ofstd_OFStandard_sanitizeAETitle)
++{
++    // Pure-ASCII alphanumeric is preserved.
++    OFString s = "MY_AE_42";
++    OFStandard::sanitizeAETitle(s);
++    OFCHECK_EQUAL(s, "MY_AE_42");
++
++    // Dots, colons, dashes, '@' are part of the allow list.
++    s = "AE.TITLE:1 at host-1";
++    OFStandard::sanitizeAETitle(s);
++    OFCHECK_EQUAL(s, "AE.TITLE:1 at host-1");
++
++    // Path separators map to underscores.
++    s = "../etc/passwd";
++    OFStandard::sanitizeAETitle(s);
++    OFCHECK_EQUAL(s, ".._etc_passwd");
++
++    // Backslash is replaced (Windows path separator).
++    s = "..\\secret";
++    OFStandard::sanitizeAETitle(s);
++    OFCHECK_EQUAL(s, ".._secret");
++
++    // Shell metacharacters are replaced.
++    s = "AE;rm -rf /";
++    OFStandard::sanitizeAETitle(s);
++    OFCHECK_EQUAL(s, "AE_rm -rf _");
++
++    // Control characters (including NUL inside the string) are replaced.
++    OFString withNul;
++    withNul.append("AB", 2);
++    withNul.append(1, '\0');
++    withNul.append("CD", 2);
++    OFStandard::sanitizeAETitle(withNul);
++    OFCHECK_EQUAL(withNul, OFString("AB_CD"));
++
++    // High-range bytes (>= 0x7F) are replaced.
++    OFString withHigh;
++    withHigh.append("AE", 2);
++    withHigh.append(1, OFstatic_cast(char, 0xFF));
++    OFStandard::sanitizeAETitle(withHigh);
++    OFCHECK_EQUAL(withHigh, OFString("AE_"));
++
++    // A surrounding quotation-mark pair is preserved (storescp behaviour).
++    s = "\"../bad\"";
++    OFStandard::sanitizeAETitle(s);
++    OFCHECK_EQUAL(s, "\".._bad\"");
++
++    // Empty string and length-1 string are handled without crashing.
++    s = "";
++    OFStandard::sanitizeAETitle(s);
++    OFCHECK_EQUAL(s, "");
++    s = "/";
++    OFStandard::sanitizeAETitle(s);
++    OFCHECK_EQUAL(s, "_");
++}
++
+ OFTEST(ofstd_safeSubtractAddMult)
+ {
+   // --------------- Subtraction ----------------
diff -Nru dcmtk-3.6.9/debian/patches/0024-CVE-2026-44628a.patch dcmtk-3.6.9/debian/patches/0024-CVE-2026-44628a.patch
--- dcmtk-3.6.9/debian/patches/0024-CVE-2026-44628a.patch	1970-01-01 01:00:00.000000000 +0100
+++ dcmtk-3.6.9/debian/patches/0024-CVE-2026-44628a.patch	2026-07-07 20:04:16.000000000 +0200
@@ -0,0 +1,114 @@
+Applied-Upstream: f4e0074682645b1a4289d62581926c4394d5c6d5
+Author: Michael Onken <onken at open-connections.de>
+Last-Update: 2026-05-29
+Description: Fix wlmscpfs crash on VR-spoofed seq. attributes.
+ wldsfs.cc cast findAndGetElement() results to DcmSequenceOfItems*
+ without checking the VR. A C-FIND with a dictionary-SQ tag declared
+ under a non-SQ wire VR (Explicit VR) thus dispatched through the wrong
+ vtable and crashes the SCP (see also CVE-2024-28130 in dcmpstat).
+ .
+ Use findAndGetSequence(), which validates the VR. Also guard getItem(0)
+ against an empty ScheduledProcedureStepSequence and drop a bogus cast.
+ .
+ Thanks for the report and analysis to Abhinav Agarwal.
+ .
+ This closes DCMTK issue #1218.
+Reviewed-By: ?tienne Mollier <emollier at debian.org>
+Bug-Debian: https://bugs.debian.org/1141411
+
+--- dcmtk.orig/dcmwlm/libsrc/wldsfs.cc
++++ dcmtk/dcmwlm/libsrc/wldsfs.cc
+@@ -1,6 +1,6 @@
+ /*
+  *
+- *  Copyright (C) 1996-2023, OFFIS e.V.
++ *  Copyright (C) 1996-2026, OFFIS e.V.
+  *  All rights reserved.  See COPYRIGHT file for details.
+  *
+  *  This software and supporting documentation were developed by
+@@ -173,20 +173,23 @@
+ //                codeSequenceTagKey - [in] DcmTagKey of the codeSequence attribute which shall be checked.
+ // Return Value : none.
+ {
+-  DcmElement *codeSequenceAttribute = NULL, *descriptionAttribute = NULL;
++  DcmSequenceOfItems *codeSequenceAttribute = NULL;
++  DcmElement *descriptionAttribute = NULL;
+   DcmElement *elementToRemove = NULL, *codeValueAttribute = NULL, *codingSchemeDesignatorAttribute = NULL;
+   OFBool codeSequenceAttributeRemoved = OFFalse;
+ 
+-  // only do something with the code sequence attribute if it is contained in the dataset
+-  if( dataset->findAndGetElement( codeSequenceTagKey, codeSequenceAttribute ).good() )
++  // only do something with the code sequence attribute if it is contained in the dataset.
++  // Note: findAndGetSequence() verifies the element's VR (SQ); a malformed element with a
++  // dictionary-SQ tag but a non-SQ wire VR is rejected here instead of being cast blindly.
++  if( dataset->findAndGetSequence( codeSequenceTagKey, codeSequenceAttribute ).good() )
+   {
+     // if the code sequence attribute is empty or contains exactly one item with an empty
+     // CodeValue and an empty CodingSchemeDesignator, remove the attribute from the dataset
+-    if( ( ((DcmSequenceOfItems*)codeSequenceAttribute)->card() == 0 ) ||
+-        ( ((DcmSequenceOfItems*)codeSequenceAttribute)->card() == 1 &&
+-          ((DcmSequenceOfItems*)codeSequenceAttribute)->getItem(0)->findAndGetElement( DCM_CodeValue, codeValueAttribute ).good() &&
++    if( ( codeSequenceAttribute->card() == 0 ) ||
++        ( codeSequenceAttribute->card() == 1 &&
++          codeSequenceAttribute->getItem(0)->findAndGetElement( DCM_CodeValue, codeValueAttribute ).good() &&
+           codeValueAttribute->getLength() == 0 &&
+-          ((DcmSequenceOfItems*)codeSequenceAttribute)->getItem(0)->findAndGetElement( DCM_CodingSchemeDesignator, codingSchemeDesignatorAttribute ).good() &&
++          codeSequenceAttribute->getItem(0)->findAndGetElement( DCM_CodingSchemeDesignator, codingSchemeDesignatorAttribute ).good() &&
+           codingSchemeDesignatorAttribute->getLength() == 0 ) )
+     {
+       elementToRemove = dataset->remove( codeSequenceAttribute );
+@@ -223,18 +226,21 @@
+ //                sequenceTagKey  - [in] DcmTagKey of the sequence attribute which shall be checked.
+ // Return Value : none.
+ {
+-  DcmElement *sequenceAttribute = NULL, *referencedSOPClassUIDAttribute = NULL, *referencedSOPInstanceUIDAttribute = NULL;
++  DcmSequenceOfItems *sequenceAttribute = NULL;
++  DcmElement *referencedSOPClassUIDAttribute = NULL, *referencedSOPInstanceUIDAttribute = NULL;
+ 
+   // in case the sequence attribute contains exactly one item with an empty
+-  // ReferencedSOPClassUID and an empty ReferencedSOPInstanceUID, remove the item
+-  if( dataset->findAndGetElement( sequenceTagKey, sequenceAttribute ).good() &&
+-      ( (DcmSequenceOfItems*)sequenceAttribute )->card() == 1 &&
+-      ( (DcmSequenceOfItems*)sequenceAttribute )->getItem(0)->findAndGetElement( DCM_ReferencedSOPClassUID, referencedSOPClassUIDAttribute ).good() &&
++  // ReferencedSOPClassUID and an empty ReferencedSOPInstanceUID, remove the item.
++  // Note: findAndGetSequence() verifies the element's VR (SQ); a malformed element with a
++  // dictionary-SQ tag but a non-SQ wire VR is rejected here instead of being cast blindly.
++  if( dataset->findAndGetSequence( sequenceTagKey, sequenceAttribute ).good() &&
++      sequenceAttribute->card() == 1 &&
++      sequenceAttribute->getItem(0)->findAndGetElement( DCM_ReferencedSOPClassUID, referencedSOPClassUIDAttribute ).good() &&
+       referencedSOPClassUIDAttribute->getLength() == 0 &&
+-      ( (DcmSequenceOfItems*)sequenceAttribute )->getItem(0)->findAndGetElement( DCM_ReferencedSOPInstanceUID, referencedSOPInstanceUIDAttribute, OFFalse ).good() &&
++      sequenceAttribute->getItem(0)->findAndGetElement( DCM_ReferencedSOPInstanceUID, referencedSOPInstanceUIDAttribute, OFFalse ).good() &&
+       referencedSOPInstanceUIDAttribute->getLength() == 0 )
+   {
+-    DcmItem *item = ((DcmSequenceOfItems*)sequenceAttribute)->remove( ((DcmSequenceOfItems*)sequenceAttribute)->getItem(0) );
++    DcmItem *item = sequenceAttribute->remove( sequenceAttribute->getItem(0) );
+     delete item;
+   }
+ }
+@@ -259,7 +265,7 @@
+ //                WLM_FAILED_IDENTIFIER_DOES_NOT_MATCH_SOP_CLASS - Error in the search mask encountered.
+ {
+   unsigned long i, j;
+-  DcmElement *scheduledProcedureStepSequenceAttribute = NULL;
++  DcmSequenceOfItems *scheduledProcedureStepSequenceAttribute = NULL;
+ 
+   // Initialize offending elements, error elements and error comment.
+   delete offendingElements;
+@@ -354,9 +360,13 @@
+       }
+ 
+       // if the ScheduledProcedureStepSequence can be found in the current dataset, handle
+-      // existent but empty ScheduledProcedureStepDescription and ScheduledProtocolCodeSequence
+-      if( resultRecord->findAndGetElement( DCM_ScheduledProcedureStepSequence, scheduledProcedureStepSequenceAttribute, OFFalse ).good() )
+-        HandleExistentButEmptyDescriptionAndCodeSequenceAttributes( ((DcmDataset*)((DcmSequenceOfItems*)scheduledProcedureStepSequenceAttribute)->getItem(0)), DCM_ScheduledProcedureStepDescription, DCM_ScheduledProtocolCodeSequence );
++      // existent but empty ScheduledProcedureStepDescription and ScheduledProtocolCodeSequence.
++      // Note: findAndGetSequence() verifies the element's VR (SQ); a malformed element with a
++      // dictionary-SQ tag but a non-SQ wire VR is rejected here instead of being cast blindly.
++      // Also guard against an empty sequence so that getItem(0) does not return NULL.
++      if( resultRecord->findAndGetSequence( DCM_ScheduledProcedureStepSequence, scheduledProcedureStepSequenceAttribute, OFFalse ).good() &&
++          scheduledProcedureStepSequenceAttribute->card() > 0 )
++        HandleExistentButEmptyDescriptionAndCodeSequenceAttributes( scheduledProcedureStepSequenceAttribute->getItem(0), DCM_ScheduledProcedureStepDescription, DCM_ScheduledProtocolCodeSequence );
+ 
+       // handle existent but empty RequestedProcedureDescription and RequestedProcedureCodeSequence
+       HandleExistentButEmptyDescriptionAndCodeSequenceAttributes( resultRecord, DCM_RequestedProcedureDescription, DCM_RequestedProcedureCodeSequence );
diff -Nru dcmtk-3.6.9/debian/patches/0025-CVE-2026-44628b.patch dcmtk-3.6.9/debian/patches/0025-CVE-2026-44628b.patch
--- dcmtk-3.6.9/debian/patches/0025-CVE-2026-44628b.patch	1970-01-01 01:00:00.000000000 +0100
+++ dcmtk-3.6.9/debian/patches/0025-CVE-2026-44628b.patch	2026-07-07 20:04:27.000000000 +0200
@@ -0,0 +1,80 @@
+Applied-Upstream: 694a0a06a38015ce768fa161a62b148189f84959
+Author: Michael Onken <onken at open-connections.de>
+Last-Update: 2026-05-29
+Description: Fix VR-spoofed sequence cast crash in wlfsim, too.
+ Apply the same findAndGetSequence() fix to the unchecked casts in
+ DatasetIsComplete() and ReferencedStudyOrPatientSequenceIsAbsent...()
+ as in f4e0074.
+Reviewed-By: ?tienne Mollier <emollier at debian.org>
+Bug-Debian: https://bugs.debian.org/1141411
+
+diff --git a/dcmwlm/libsrc/wlfsim.cc b/dcmwlm/libsrc/wlfsim.cc
+index 40a93c4eb..8543f795a 100644
+--- a/dcmwlm/libsrc/wlfsim.cc
++++ b/dcmwlm/libsrc/wlfsim.cc
+@@ -493,7 +493,7 @@ OFBool WlmFileSystemInteractionManager::DatasetIsComplete( DcmDataset *dataset )
+ // Return Value : OFTrue in case the given dataset contains all necessary return type 1 information,
+ //                OFFalse otherwise.
+ {
+-  DcmElement *scheduledProcedureStepSequence = NULL;
++  DcmSequenceOfItems *scheduledProcedureStepSequence = NULL;
+ 
+   // initialize returnValue
+   OFBool complete = OFTrue;
+@@ -503,7 +503,7 @@ OFBool WlmFileSystemInteractionManager::DatasetIsComplete( DcmDataset *dataset )
+   // the dataset is considered to be incomplete...
+   // ...if the ScheduledProcedureStepSequence is missing or
+   // ...if the ScheduledProcedureStepSequence does not have exactly one item
+-  if( dataset->findAndGetElement( DCM_ScheduledProcedureStepSequence, scheduledProcedureStepSequence ).bad() || ((DcmSequenceOfItems*)scheduledProcedureStepSequence)->card() != 1 )
++  if( dataset->findAndGetSequence( DCM_ScheduledProcedureStepSequence, scheduledProcedureStepSequence ).bad() || scheduledProcedureStepSequence->card() != 1 )
+   {
+     DCMWLM_DEBUG("- ScheduledProcedureStepSequence " << DCM_ScheduledProcedureStepSequence << " is missing or does not have exactly one item");
+     complete = OFFalse;
+@@ -512,7 +512,7 @@ OFBool WlmFileSystemInteractionManager::DatasetIsComplete( DcmDataset *dataset )
+   {
+     // so the ScheduledProcedureStepSequence is existent and has exactly one item;
+     // get this one and only item from the ScheduledProcedureStepSequence
+-    DcmItem *scheduledProcedureStepSequenceItem = ((DcmSequenceOfItems*)scheduledProcedureStepSequence)->getItem(0);
++    DcmItem *scheduledProcedureStepSequenceItem = scheduledProcedureStepSequence->getItem(0);
+ 
+     // the dataset is considered to be incomplete...
+     // ...if ScheduledStationAETitle is missing or empty in the ScheduledProcedureStepSequence, or
+@@ -563,11 +563,14 @@ OFBool WlmFileSystemInteractionManager::ReferencedStudyOrPatientSequenceIsAbsent
+ // Return Value : OFTrue in case the sequence attribute is absent (and cannot be added to the dataset)
+ //                or existent but non-empty and incomplete, OFFalse otherwise.
+ {
+-  DcmElement *sequence = NULL;
++  DcmSequenceOfItems *sequence = NULL;
+   OFBool result;
+ 
+   // check whether the type 2 sequence attribute is absent
+-  if( dset->findAndGetElement( sequenceTagKey, sequence ).bad() )
++  // (findAndGetSequence also fails if the attribute is present but does not have
++  //  a sequence VR, e.g. due to a VR-spoofed Explicit VR encoding; in that case
++  //  the malformed element is replaced below with a proper empty sequence)
++  if( dset->findAndGetSequence( sequenceTagKey, sequence ).bad() )
+   {
+     DCMWLM_DEBUG("- " << DcmTag(sequenceTagKey).getTagName() << " " << sequenceTagKey << " is missing");
+     // try to add it to the dataset and return OFFalse if successful
+@@ -583,17 +586,17 @@ OFBool WlmFileSystemInteractionManager::ReferencedStudyOrPatientSequenceIsAbsent
+   {
+     // if the sequence attribute is existent but empty, we want to return OFFalse
+     // (note that the sequence is actually type 2, so being empty is ok)
+-    if( ((DcmSequenceOfItems*)sequence)->card() == 0 )
++    if( sequence->card() == 0 )
+       result = OFFalse;
+     else
+     {
+       // if the sequence attribute is existent and non-empty, we need
+       // to check every item in the sequence for completeness
+       result = OFFalse;
+-      for( unsigned long i=0 ; i<((DcmSequenceOfItems*)sequence)->card() && !result ; i++ )
++      for( unsigned long i=0 ; i<sequence->card() && !result ; i++ )
+       {
+-        if( AttributeIsAbsentOrEmpty( DCM_ReferencedSOPClassUID, ((DcmSequenceOfItems*)sequence)->getItem(i) ) ||
+-            AttributeIsAbsentOrEmpty( DCM_ReferencedSOPInstanceUID, ((DcmSequenceOfItems*)sequence)->getItem(i) ) )
++        if( AttributeIsAbsentOrEmpty( DCM_ReferencedSOPClassUID, sequence->getItem(i) ) ||
++            AttributeIsAbsentOrEmpty( DCM_ReferencedSOPInstanceUID, sequence->getItem(i) ) )
+           result = OFTrue;
+       }
+       if ( result )
diff -Nru dcmtk-3.6.9/debian/patches/series dcmtk-3.6.9/debian/patches/series
--- dcmtk-3.6.9/debian/patches/series	2026-06-23 21:44:21.000000000 +0200
+++ dcmtk-3.6.9/debian/patches/series	2026-07-07 20:05:27.000000000 +0200
@@ -15,3 +15,9 @@
 0017-CVE-2025-14841.patch
 0018-CVE-2026-10194.patch
 0019-CVE-2026-12805.patch
+0020-CVE-2026-50003.patch
+0021-CVE-2026-50254.patch
+0022-CVE-2026-35505.patch
+0023-CVE-2026-52868.patch
+0024-CVE-2026-44628a.patch
+0025-CVE-2026-44628b.patch
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From noreply at release.debian.org  Mon Jul 13 05:39:03 2026
From: noreply at release.debian.org (Debian testing autoremoval watch)
Date: Mon, 13 Jul 2026 04:39:03 +0000
Subject: [Debian-med-packaging] macs is marked for autoremoval from testing
Message-ID: <E1wj8Rb-001sfK-2c@respighi.debian.org>

macs 3.0.2-3 is marked for autoremoval from testing on 2026-07-13

It is affected by these RC bugs:
1139984: macs: fails to migrate to testing for too long
 https://bugs.debian.org/1139984

It (build-)depends on packages with these RC bugs:
1140980: httpx: FTBFS: E       assert [('uvicorn.ac...1.1 200 OK"')] == [('httpx', 20...1.1 200 OK"')]
 https://bugs.debian.org/1140980
1141408: python-tabulate: fails to migrate to testing for too long
 https://bugs.debian.org/1141408



For more information on the autoremoval process, including hints to prevent
autoremoval can be found on the wiki: https://wiki.debian.org/Autoremoval

This mail is generated by:
https://salsa.debian.org/release-team/release-tools/-/blob/master/mailer/mail_autoremovals.pl

Autoremoval data is generated by:
https://salsa.debian.org/qa/udd/-/blob/master/udd/testing_autoremovals_gatherer.pl


From noreply at release.debian.org  Mon Jul 13 05:39:06 2026
From: noreply at release.debian.org (Debian testing watch)
Date: Mon, 13 Jul 2026 04:39:06 +0000
Subject: [Debian-med-packaging] amide 1.1.0-0.1 MIGRATED to testing
Message-ID: <E1wj8Re-001sgR-2M@respighi.debian.org>

FYI: The status of the amide source package
in Debian's testing distribution has changed.

  Previous version: 1.0.6-8.2
  Current version:  1.1.0-0.1

-- 
This email is automatically generated once a day.  As the installation of
new packages into testing happens multiple times a day you will receive
later changes on the next day.
See https://release.debian.org/testing-watch/ for more information.


From noreply at release.debian.org  Mon Jul 13 05:39:09 2026
From: noreply at release.debian.org (Debian testing watch)
Date: Mon, 13 Jul 2026 04:39:09 +0000
Subject: [Debian-med-packaging] praat 6.6.30+dfsg-1 MIGRATED to testing
Message-ID: <E1wj8Rh-001skP-0a@respighi.debian.org>

FYI: The status of the praat source package
in Debian's testing distribution has changed.

  Previous version: 6.4.64+dfsg-1
  Current version:  6.6.30+dfsg-1

-- 
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From noreply at release.debian.org  Mon Jul 13 05:39:08 2026
From: noreply at release.debian.org (Debian testing watch)
Date: Mon, 13 Jul 2026 04:39:08 +0000
Subject: [Debian-med-packaging] last-align 1652-1 MIGRATED to testing
Message-ID: <E1wj8Rg-001siL-05@respighi.debian.org>

FYI: The status of the last-align source package
in Debian's testing distribution has changed.

  Previous version: 1651-2
  Current version:  1652-1

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From noreply at release.debian.org  Mon Jul 13 05:39:11 2026
From: noreply at release.debian.org (Debian testing watch)
Date: Mon, 13 Jul 2026 04:39:11 +0000
Subject: [Debian-med-packaging] snakemake REMOVED from testing
Message-ID: <E1wj8Rj-001sp4-0O@respighi.debian.org>

FYI: The status of the snakemake source package
in Debian's testing distribution has changed.

  Previous version: 7.32.4-12
  Current version:  (not in testing)
  Hint: <https://release.debian.org/britney/hints/pochu>
    # 20260710
    # python3.14 transition

The script that generates this mail tries to extract removal
reasons from comments in the britney hint files. Those comments
were not originally meant to be machine readable, so if the
reason for removing your package seems to be nonsense, it is
probably the reporting script that got confused. Please check the
actual hints file before you complain about meaningless removals.

-- 
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From ftpmaster at ftp-master.debian.org  Mon Jul 13 08:48:52 2026
From: ftpmaster at ftp-master.debian.org (Debian FTP Masters)
Date: Mon, 13 Jul 2026 07:48:52 +0000
Subject: [Debian-med-packaging] Processing of
 praat_6.6.30+dfsg-1~bpo13+1_amd64.changes
Message-ID: <E1wjBPI-001jYj-2d@usper.debian.org>

praat_6.6.30+dfsg-1~bpo13+1_amd64.changes uploaded successfully to localhost
along with the files:
  praat_6.6.30+dfsg-1~bpo13+1.dsc
  praat_6.6.30+dfsg-1~bpo13+1.debian.tar.xz
  praat-dbgsym_6.6.30+dfsg-1~bpo13+1_amd64.deb
  praat-doc_6.6.30+dfsg-1~bpo13+1_all.deb
  praat_6.6.30+dfsg-1~bpo13+1_amd64.buildinfo
  praat_6.6.30+dfsg-1~bpo13+1_amd64.deb

Greetings,

	Your Debian queue daemon (running on host usper.debian.org)


From ftpmaster at ftp-master.debian.org  Mon Jul 13 09:34:11 2026
From: ftpmaster at ftp-master.debian.org (Debian FTP Masters)
Date: Mon, 13 Jul 2026 08:34:11 +0000
Subject: [Debian-med-packaging] praat_6.6.30+dfsg-1~bpo13+1_amd64.changes is
 NEW
Message-ID: <E1wjC79-0000000FAV8-2m7D@fasolo.debian.org>

Mapping trixie-backports to stable-backports.
binary:praat is NEW.
binary:praat-doc is NEW.
binary:praat-doc is NEW.
binary:praat is NEW.
source:praat is NEW.

Your package has been put into the NEW queue, which requires manual action
from the ftpteam to process. The upload was otherwise valid (it had a good
OpenPGP signature and file hashes are valid), so please be patient.

Packages are routinely processed through to the archive, and do feel
free to browse the NEW queue[1].

If there is an issue with the upload, you will receive an email from a
member of the ftpteam.

If you have any questions, you may reply to this email.

[1]: https://ftp-master.debian.org/new.html
     or https://ftp-master.debian.org/backports-new.html for *-backports
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From ftpmaster at ftp-master.debian.org  Mon Jul 13 09:59:50 2026
From: ftpmaster at ftp-master.debian.org (Debian FTP Masters)
Date: Mon, 13 Jul 2026 08:59:50 +0000
Subject: [Debian-med-packaging] Processing of
 praat_6.6.30+dfsg-1~bpo12+1_amd64.changes
Message-ID: <E1wjCVy-001mgn-2d@usper.debian.org>

praat_6.6.30+dfsg-1~bpo12+1_amd64.changes uploaded successfully to localhost
along with the files:
  praat_6.6.30+dfsg-1~bpo12+1.dsc
  praat_6.6.30+dfsg-1~bpo12+1.debian.tar.xz
  praat-dbgsym_6.6.30+dfsg-1~bpo12+1_amd64.deb
  praat-doc_6.6.30+dfsg-1~bpo12+1_all.deb
  praat_6.6.30+dfsg-1~bpo12+1_amd64.buildinfo
  praat_6.6.30+dfsg-1~bpo12+1_amd64.deb

Greetings,

	Your Debian queue daemon (running on host usper.debian.org)


From ftpmaster at ftp-master.debian.org  Mon Jul 13 10:04:40 2026
From: ftpmaster at ftp-master.debian.org (Debian FTP Masters)
Date: Mon, 13 Jul 2026 09:04:40 +0000
Subject: [Debian-med-packaging] praat_6.6.30+dfsg-1~bpo12+1_amd64.changes is
 NEW
Message-ID: <E1wjCae-0000000FFjX-1vuR@fasolo.debian.org>

Mapping bookworm-backports to oldstable-backports.
binary:praat is NEW.
binary:praat-doc is NEW.
binary:praat-doc is NEW.
binary:praat is NEW.
source:praat is NEW.

Your package has been put into the NEW queue, which requires manual action
from the ftpteam to process. The upload was otherwise valid (it had a good
OpenPGP signature and file hashes are valid), so please be patient.

Packages are routinely processed through to the archive, and do feel
free to browse the NEW queue[1].

If there is an issue with the upload, you will receive an email from a
member of the ftpteam.

If you have any questions, you may reply to this email.

[1]: https://ftp-master.debian.org/new.html
     or https://ftp-master.debian.org/backports-new.html for *-backports
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From owner at bugs.debian.org  Mon Jul 13 16:47:04 2026
From: owner at bugs.debian.org (Debian Bug Tracking System)
Date: Mon, 13 Jul 2026 15:47:04 +0000
Subject: [Debian-med-packaging] Processed: unblock 1130323 with 1130358
 1140949 1141066 1141167 1141233 1141649 1141780
References: <1783957492-30791369@bts.debian.org>
Message-ID: <handler.s.C.17839574981535196.transcript@bugs.debian.org>

Processing commands for control at bugs.debian.org:

> # removed from testing
> unblock 1130323 with 1130358 1140949 1141066 1141167 1141233 1141649 1141780
Bug #1130323 [release.debian.org] transition: python 3.14 as default
1130323 was blocked by: 1125251 1127767 1127773 1130351 1130357 1130358 1130893 1131792 1131795 1131796 1131798 1135916 1139538 1140305 1140857 1140889 1140944 1140945 1140946 1140949 1141066 1141089 1141105 1141123 1141160 1141163 1141165 1141167 1141168 1141233 1141280 1141283 1141285 1141291 1141379 1141440 1141467 1141648 1141649 1141714 1141778 1141780 1141884
1130323 was blocking: 1141342 1141787
Removed blocking bug(s) of 1130323: 1140949, 1141780, 1141233, 1141167, 1141649, 1141066, and 1130358
> thanks
Stopping processing here.

Please contact me if you need assistance.
-- 
1130323: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1130323
Debian Bug Tracking System
Contact owner at bugs.debian.org with problems


From owner at bugs.debian.org  Mon Jul 13 16:57:02 2026
From: owner at bugs.debian.org (Debian Bug Tracking System)
Date: Mon, 13 Jul 2026 15:57:02 +0000
Subject: [Debian-med-packaging] Processed: unblock 1130323 with 1131795
References: <1783958069-730261066@bts.debian.org>
Message-ID: <handler.s.C.17839580731540008.transcript@bugs.debian.org>

Processing commands for control at bugs.debian.org:

> # removed from testing
> unblock 1130323 with 1131795
Bug #1130323 [release.debian.org] transition: python 3.14 as default
1130323 was blocked by: 1125251 1127767 1127773 1130351 1130357 1130893 1131792 1131795 1131796 1131798 1135916 1139538 1140305 1140857 1140889 1140944 1140945 1140946 1141089 1141105 1141123 1141160 1141163 1141165 1141168 1141280 1141283 1141285 1141291 1141379 1141440 1141467 1141648 1141714 1141778 1141884
1130323 was blocking: 1141342 1141787
Removed blocking bug(s) of 1130323: 1131795
> thanks
Stopping processing here.

Please contact me if you need assistance.
-- 
1130323: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1130323
Debian Bug Tracking System
Contact owner at bugs.debian.org with problems


From elbrus at debian.org  Mon Jul 13 21:08:30 2026
From: elbrus at debian.org (Paul Gevers)
Date: Mon, 13 Jul 2026 22:08:30 +0200
Subject: [Debian-med-packaging] Bug#1142008: src:mrtrix3: fails to migrate
 to testing for too long
Message-ID: <178397343342.276708.17177278134466009187@debian.org>

Source: mrtrix3
Version: 3.0.8-1
Severity: serious
Control: close -1 3.0.8-2
Tags: sid forky
User: release.debian.org at packages.debian.org
Usertags: out-of-sync

Dear maintainer(s),

The Release Team considers packages that are out-of-sync between testing and unstable for more than 30 days as having a Release Critical bug in testing [1]. Your package src:mrtrix3 has been trying to migrate for 31 days [2], hence this bug report. The current output of the migration software for this package is copied to the bottom of this report and should list the reason why the package is blocked.

If a package is out of sync between unstable and testing for a longer period, this usually means that bugs in the package in testing cannot be fixed via unstable. Blocked packages can have impact on other packages, which makes preparing for the release more difficult. The situation that caused this bug report might even be the result of such an issue. We expect maintainers to fix issues that hamper the migration of their package in a timely manner. If your package in this situation due to another package, consider helping out.

This bug will trigger auto-removal when appropriate. As with all new bugs, there will be at least 30 days before the package is auto-removed.

This bug submission immediately closes the bug with the version in unstable, so if that version or a later version migrates, this bug will no longer affect testing. This bug is also tagged to only affect sid and forky, so it doesn't affect (old-)stable.

If you believe your package is unable to migrate to testing due to issues beyond your control, don't hesitate to contact the Release Team.

This bug report has been automatically generated. If you have any comments with regards to the content or the process, please reach out to me.

Paul

[1] https://lists.debian.org/debian-devel-announce/2023/06/msg00001.html
[2] https://qa.debian.org/excuses.php?package=mrtrix3

Current text from [2]:
Migration status for mrtrix3 (3.0.8-1 to 3.0.8-2): BLOCKED: Rejected/violates migration policy/introduces a regression
Issues preventing migration:
? ? Updating mrtrix3 would introduce bugs in testing: #1140261
? ? Missing build on amd64
? ? Missing build on arm64
? ? Missing build on all
? ? Autopkgtest deferred: missing builds
? ? Lintian check deferred: missing builds
? ? Reproducibility check deferred on amd64: missing builds - info
? ? Reproducibility check deferred on arm64: missing builds - info
Additional info (not blocking):
? ? Piuparts tested OK - https://piuparts.debian.org/sid/source/m/mrtrix3.html
? ? Reproduced on armhf - info
? ? Reproduced on i386 - info
? ? 31 days old (needed 5 days)


From owner at bugs.debian.org  Mon Jul 13 21:11:07 2026
From: owner at bugs.debian.org (Debian Bug Tracking System)
Date: Mon, 13 Jul 2026 20:11:07 +0000
Subject: [Debian-med-packaging] Processed: src:qtltools: fails to migrate to
 testing for too long
References: <178397343979.276708.10615231003021132203@debian.org>
 <178397343979.276708.10615231003021132203@debian.org>
Message-ID: <handler.s.B.17839734421660579.transcript@bugs.debian.org>

Processing control commands:

> close -1 1.3.1+dfsg-5
Bug #1142009 [src:qtltools] src:qtltools: fails to migrate to testing for too long
Marked as fixed in versions qtltools/1.3.1+dfsg-5.
Bug #1142009 [src:qtltools] src:qtltools: fails to migrate to testing for too long
Marked Bug as done

-- 
1142009: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1142009
Debian Bug Tracking System
Contact owner at bugs.debian.org with problems


From owner at bugs.debian.org  Mon Jul 13 21:11:04 2026
From: owner at bugs.debian.org (Debian Bug Tracking System)
Date: Mon, 13 Jul 2026 20:11:04 +0000
Subject: [Debian-med-packaging] Processed: src:mrtrix3: fails to migrate to
 testing for too long
References: <178397343342.276708.17177278134466009187@debian.org>
 <178397343342.276708.17177278134466009187@debian.org>
Message-ID: <handler.s.B.17839734351660554.transcript@bugs.debian.org>

Processing control commands:

> close -1 3.0.8-2
Bug #1142008 [src:mrtrix3] src:mrtrix3: fails to migrate to testing for too long
The source 'mrtrix3' and version '3.0.8-2' do not appear to match any binary packages
Marked as fixed in versions mrtrix3/3.0.8-2.
Bug #1142008 [src:mrtrix3] src:mrtrix3: fails to migrate to testing for too long
Marked Bug as done

-- 
1142008: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1142008
Debian Bug Tracking System
Contact owner at bugs.debian.org with problems


From elbrus at debian.org  Mon Jul 13 21:08:30 2026
From: elbrus at debian.org (Paul Gevers)
Date: Mon, 13 Jul 2026 22:08:30 +0200
Subject: [Debian-med-packaging] Bug#1142009: src:qtltools: fails to migrate
 to testing for too long
Message-ID: <178397343979.276708.10615231003021132203@debian.org>

Source: qtltools
Version: 1.3.1+dfsg-4
Severity: serious
Control: close -1 1.3.1+dfsg-5
Tags: sid forky
User: release.debian.org at packages.debian.org
Usertags: out-of-sync

Dear maintainer(s),

The Release Team considers packages that are out-of-sync between testing and unstable for more than 30 days as having a Release Critical bug in testing [1]. Your package src:qtltools has been trying to migrate for 31 days [2], hence this bug report. The current output of the migration software for this package is copied to the bottom of this report and should list the reason why the package is blocked.

If a package is out of sync between unstable and testing for a longer period, this usually means that bugs in the package in testing cannot be fixed via unstable. Blocked packages can have impact on other packages, which makes preparing for the release more difficult. The situation that caused this bug report might even be the result of such an issue. We expect maintainers to fix issues that hamper the migration of their package in a timely manner. If your package in this situation due to another package, consider helping out.

This bug will trigger auto-removal when appropriate. As with all new bugs, there will be at least 30 days before the package is auto-removed.

This bug submission immediately closes the bug with the version in unstable, so if that version or a later version migrates, this bug will no longer affect testing. This bug is also tagged to only affect sid and forky, so it doesn't affect (old-)stable.

If you believe your package is unable to migrate to testing due to issues beyond your control, don't hesitate to contact the Release Team.

This bug report has been automatically generated. If you have any comments with regards to the content or the process, please reach out to me.

Paul

[1] https://lists.debian.org/debian-devel-announce/2023/06/msg00001.html
[2] https://qa.debian.org/excuses.php?package=qtltools

Current text from [2]:
Migration status for qtltools (1.3.1+dfsg-4 to 1.3.1+dfsg-5): BLOCKED: Rejected/violates migration policy/introduces a regression
Issues preventing migration:
? ? Autopkgtest for qtltools/1.3.1+dfsg-5: amd64: Regression ? (reference ?), arm64: Regression ? (reference ?), armhf: Regression ? (reference ?), i386: Regression ? (reference ?), loong64: Regression ? (reference ?), ppc64el: Regression ? (reference ?), riscv64: Regression ? (reference ?), s390x: Regression ? (reference ?)
Additional info (not blocking):
? ? Piuparts tested OK - https://piuparts.debian.org/sid/source/q/qtltools.html
? ? Reproduced on amd64 - info
? ? Reproduced on arm64 - info
? ? Reproduced on armhf - info
? ? Reproduced on i386 - info
? ? 30 days old (needed 5 days)


From pgt at debian.org  Tue Jul 14 21:10:57 2026
From: pgt at debian.org (Pierre Gruet)
Date: Tue, 14 Jul 2026 22:10:57 +0200
Subject: [Debian-med-packaging] Bug#1139484: picard-tools: FTBFS: Test: Test
 method testCleanSam[1](simple_overhang.sam,
 99M1S)(picard.sam.CleanSamTest) produced standard out/err: Ignoring SAM
 validation error: ERROR::CIGAR_MAPS_OFF_REFERENCE:Read name simple_overhang,
 Read CIGAR M operator maps off end of reference
In-Reply-To: <akPKY_9CD5BZ85pH@an3as.eu>
References: <akPKY_9CD5BZ85pH@an3as.eu> <E1wWt3p-00ApDE-16@paradis.debian.org>
Message-ID: <1e81ed1b-0b07-4f24-a698-58ab3a38b73b@debian.org>

Hi Andreas,


Le 30/06/2026 ? 15:53, Andreas Tille a ?crit?:
> Hi Pierre and others,
> 
> it seems the problem occures when creating the docs.  I wonder whether
> there is some simple solution for this problem or whether it might be a
> sensible means to deal with this problem by just not generating the docs
> and remove the libpicard-java-doc package.

I understand better, I pulled your changes and got problems with the 
doc. B-D again on default-jdk instead of default-jdk-headless fixes 
this, although we can really have a discussion about dropping the -doc 
package nonetheless.

I get the 4 failing tests of the bug report again, I feel there is an 
issue in a class of htsjdk, which has undergone changes in the last few 
days as I can see in the upstream repository. I suggest to wait for the 
next upstream release of htsjdk as it should fix the issue, hopefully.

> 
> Kind regards
>      Andreas.
> 

All the best,

-- 
Pierre
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From noreply at release.debian.org  Wed Jul 15 05:39:15 2026
From: noreply at release.debian.org (Debian testing watch)
Date: Wed, 15 Jul 2026 04:39:15 +0000
Subject: [Debian-med-packaging] macs REMOVED from testing
Message-ID: <E1wjrOt-004HWx-25@respighi.debian.org>

FYI: The status of the macs source package
in Debian's testing distribution has changed.

  Previous version: 3.0.2-3
  Current version:  (not in testing)
  Hint: <https://release.debian.org/britney/hints/auto-removals>
    # 1140980,1141408 in httpx,python-tabulate
    # 1139984

The script that generates this mail tries to extract removal
reasons from comments in the britney hint files. Those comments
were not originally meant to be machine readable, so if the
reason for removing your package seems to be nonsense, it is
probably the reporting script that got confused. Please check the
actual hints file before you complain about meaningless removals.

-- 
This email is automatically generated once a day.  As the installation of
new packages into testing happens multiple times a day you will receive
later changes on the next day.
See https://release.debian.org/testing-watch/ for more information.


From noreply at release.debian.org  Wed Jul 15 05:39:16 2026
From: noreply at release.debian.org (Debian testing watch)
Date: Wed, 15 Jul 2026 04:39:16 +0000
Subject: [Debian-med-packaging] python-scinexus 2026.7.2-1 MIGRATED to
 testing
Message-ID: <E1wjrOu-004HYI-1k@respighi.debian.org>

FYI: The status of the python-scinexus source package
in Debian's testing distribution has changed.

  Previous version: 2026.5.18-4
  Current version:  2026.7.2-1

-- 
This email is automatically generated once a day.  As the installation of
new packages into testing happens multiple times a day you will receive
later changes on the next day.
See https://release.debian.org/testing-watch/ for more information.


From tille at debian.org  Wed Jul 15 05:48:05 2026
From: tille at debian.org (Andreas Tille)
Date: Wed, 15 Jul 2026 06:48:05 +0200
Subject: [Debian-med-packaging] Bug#1139484: picard-tools: FTBFS: Test: Test
 method testCleanSam[1](simple_overhang.sam,
 99M1S)(picard.sam.CleanSamTest) produced standard out/err: Ignoring SAM
 validation error: ERROR::CIGAR_MAPS_OFF_REFERENCE:Read name simple_overhang,
 Read CIGAR M operator maps off end of reference
In-Reply-To: <1e81ed1b-0b07-4f24-a698-58ab3a38b73b@debian.org>
References: <akPKY_9CD5BZ85pH@an3as.eu>
 <1e81ed1b-0b07-4f24-a698-58ab3a38b73b@debian.org>
 <E1wWt3p-00ApDE-16@paradis.debian.org>
Message-ID: <alcRBVYk-snoiXwW@an3as.eu>

Hi Pierre,

Am Tue, Jul 14, 2026 at 10:10:57PM +0200 schrieb Pierre Gruet:
> I suggest to wait for the next upstream
> release of htsjdk as it should fix the issue, hopefully.

Fine for me.  Thank you for checking
    Andreas.

-- 
https://fam-tille.de


From owner at bugs.debian.org  Wed Jul 15 09:09:02 2026
From: owner at bugs.debian.org (Debian Bug Tracking System)
Date: Wed, 15 Jul 2026 08:09:02 +0000
Subject: [Debian-med-packaging] Processed: tagging 1139466
References: <1784102908-3486-bts-bunk@debian.org>
Message-ID: <handler.s.C.17841029102688066.transcript@bugs.debian.org>

Processing commands for control at bugs.debian.org:

> tags 1139466 + upstream
Bug #1139466 [src:bart-view] bart-view: FTBFS: /usr/include/bart/misc/opts.h:191:82: error: initialization of 'int *' from incompatible pointer type 'long int *' [-Wincompatible-pointer-types]
Added tag(s) upstream.
> thanks
Stopping processing here.

Please contact me if you need assistance.
-- 
1139466: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139466
Debian Bug Tracking System
Contact owner at bugs.debian.org with problems


From owner at bugs.debian.org  Wed Jul 15 11:35:01 2026
From: owner at bugs.debian.org (Debian Bug Tracking System)
Date: Wed, 15 Jul 2026 10:35:01 +0000
Subject: [Debian-med-packaging] Processed: tagging 1139472
References: <1784111568-1939-bts-bunk@debian.org>
Message-ID: <handler.s.C.17841115712756927.transcript@bugs.debian.org>

Processing commands for control at bugs.debian.org:

> tags 1139472 + trixie
Bug #1139472 {Done: Pierre Gruet <pgt at debian.org>} [src:milib] milib: FTBFS: /<<PKGBUILDDIR>>/src/main/java/com/milaboratory/core/alignment/kaligner1/KAlignerParameters.java:630: error: unreported exception IOException; must be caught or declared to be thrown
Added tag(s) trixie.
> thanks
Stopping processing here.

Please contact me if you need assistance.
-- 
1139472: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139472
Debian Bug Tracking System
Contact owner at bugs.debian.org with problems


From owner at bugs.debian.org  Wed Jul 15 13:15:03 2026
From: owner at bugs.debian.org (Debian Bug Tracking System)
Date: Wed, 15 Jul 2026 12:15:03 +0000
Subject: [Debian-med-packaging] Processed: severity of 1140920 is serious,
 severity of 1140923 is serious, severity of 1140929 is serious ...
References: <1784116169-996983155@bts.debian.org>
Message-ID: <handler.s.C.17841175842803215.transcript@bugs.debian.org>

Processing commands for control at bugs.debian.org:

> severity 1140920 serious
Bug #1140920 [src:asl] FTBFS against vtk 9.6
Severity set to 'serious' from 'normal'
> severity 1140923 serious
Bug #1140923 [src:gdcm] FTBFS: ?cerr? is not a member of ?std?
Severity set to 'serious' from 'normal'
> severity 1140929 serious
Bug #1140929 [src:liggghts] FTBFS with vtk 9.6
Severity set to 'serious' from 'normal'
> severity 1140936 serious
Bug #1140936 [src:pcl] FTBFS against vtk 9.6
Severity set to 'serious' from 'normal'
> severity 1140906 serious
Bug #1140906 [src:vtk-dicom] FTBFS: ?cout? is not a member of ?std?
Severity set to 'serious' from 'important'
> thanks
Stopping processing here.

Please contact me if you need assistance.
-- 
1140906: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1140906
1140920: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1140920
1140923: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1140923
1140929: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1140929
1140936: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1140936
Debian Bug Tracking System
Contact owner at bugs.debian.org with problems


From noreply at ajdmetaldesigns.com  Thu Jul 16 02:37:21 2026
From: noreply at ajdmetaldesigns.com (Willie Wong)
Date: Wed, 15 Jul 2026 18:37:21 -0700
Subject: [Debian-med-packaging] Put Your Capital to Work - Build Monthly
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Message-ID: <202615071837219F54AEF553-490C524718@ajdmetaldesigns.com>


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