[Debian-med-packaging] Bug#1140252: heudiconv: FTBFS: E ModuleNotFoundError: No module named 'pint'
Santiago Vila
sanvila at debian.org
Wed Jun 17 17:15:04 BST 2026
Package: src:heudiconv
Version: 1.4.0-2
Severity: serious
Tags: ftbfs forky sid
Dear maintainer:
During a rebuild of all packages in unstable, this package failed to build.
Below you will find the last part of the build log (probably the most
relevant part, but not necessarily). If required, the full build log
is available here:
https://people.debian.org/~sanvila/build-logs/202606/
About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.
If you cannot reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:heudiconv, so that this is still
visible in the BTS web page for this package.
Thanks.
--------------------------------------------------------------------------------
[...]
debian/rules clean
dh clean --buildsystem=pybuild
dh_auto_clean -O--buildsystem=pybuild
pybuild --clean -i python{version} -p "3.14 3.13" --parallel=2
rm -rf .pybuild/
find . -name \*.pyc -exec rm {} \;
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
rm -f debian/debhelper-build-stamp
rm -rf debian/.debhelper/
rm -f -- debian/heudiconv.substvars debian/files
rm -fr -- debian/heudiconv/ debian/tmp/
find . \( \( \
\( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \
\( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
[... snipped ...]
heudiconv/cli/run.py:30: in main
workflow(**kwargs)
heudiconv/main.py:480: in workflow
prep_conversion(
heudiconv/convert.py:215: in prep_conversion
seqinfo = group_dicoms_into_seqinfos(
heudiconv/dicoms.py:338: in group_dicoms_into_seqinfos
mwinfo = validate_dicom(filename, dcmfilter)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
heudiconv/dicoms.py:175: in validate_dicom
parse_private_csa_header(mw.dcm_data, "ProtocolName", "tProtocolName")
heudiconv/dicoms.py:806: in parse_private_csa_header
import dcmstack.extract as dsextract
/usr/lib/python3/dist-packages/dcmstack/__init__.py:7: in <module>
from .dcmstack import *
/usr/lib/python3/dist-packages/dcmstack/dcmstack.py:30: in <module>
from . import snd
/usr/lib/python3/dist-packages/dcmstack/snd.py:7: in <module>
import pint
E ModuleNotFoundError: No module named 'pint'
------------------------------ Captured log call -------------------------------
WARNING heudiconv.main:main.py:362 Could not check for version updates: Connection to server could not be made
=========================== short test summary info ============================
FAILED tests/test_dicoms.py::test_private_csa_header - ModuleNotFoundError: N...
FAILED tests/test_dicoms.py::test_embed_dicom_and_nifti_metadata - ModuleNotF...
FAILED tests/test_heuristics.py::test_scans_keys_reproin[invocation0] - Modul...
FAILED tests/test_heuristics.py::test_ls - ModuleNotFoundError: No module nam...
FAILED tests/test_heuristics.py::test_scout_conversion - ModuleNotFoundError:...
FAILED tests/test_heuristics.py::test_notop[bidsoptions0] - ModuleNotFoundErr...
FAILED tests/test_heuristics.py::test_notop[bidsoptions1] - ModuleNotFoundErr...
FAILED tests/test_main.py::test_cache - ModuleNotFoundError: No module named ...
FAILED tests/test_regression.py::test_grouping[merged] - ModuleNotFoundError:...
=========== 9 failed, 185 passed, 10 skipped, 5 deselected in 9.76s ============
E: pybuild pybuild:485: test: plugin pyproject failed with: exit code=1: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_heudiconv/build; python3.14 -m pytest -k 'not test_bvals_are_zero and not test_reproin_largely_smoke'
I: pybuild pybuild:390: rm -rf /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_heudiconv/build/heudiconv/tests ; cp -a heudiconv/tests /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_heudiconv/build/
I: pybuild base:385: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_heudiconv/build; python3.13 -m pytest -k 'not test_bvals_are_zero and not test_reproin_largely_smoke'
============================= test session starts ==============================
platform linux -- Python 3.13.14, pytest-9.0.3, pluggy-1.6.0
rootdir: /<<PKGBUILDDIR>>
configfile: tox.ini
plugins: typeguard-4.4.4
collected 209 items / 5 deselected / 204 selected
heudiconv/external/tests/test_dlad.py .. [ 0%]
heudiconv/heuristics/test_reproin.py .................. [ 9%]
heudiconv/queue.py . [ 10%]
tests/test_archives.py .......... [ 15%]
tests/test_bids.py ........................................s. [ 35%]
tests/test_convert.py .......... [ 40%]
tests/test_dicoms.py FF........................ss [ 54%]
tests/test_heuristics.py .FFF.FF. [ 58%]
tests/test_main.py ..........F... [ 65%]
tests/test_monitor.py ssss [ 67%]
tests/test_queue.py ... [ 68%]
tests/test_regression.py sssF [ 70%]
tests/test_tarballs.py . [ 71%]
tests/test_utils.py .................................................... [ 96%]
....... [100%]
=================================== FAILURES ===================================
___________________________ test_private_csa_header ____________________________
tests/test_dicoms.py:38: in test_private_csa_header
assert parse_private_csa_header(dcm_data, pub, priv) != ""
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
heudiconv/dicoms.py:806: in parse_private_csa_header
import dcmstack.extract as dsextract
/usr/lib/python3/dist-packages/dcmstack/__init__.py:7: in <module>
from .dcmstack import *
/usr/lib/python3/dist-packages/dcmstack/dcmstack.py:30: in <module>
from . import snd
/usr/lib/python3/dist-packages/dcmstack/snd.py:7: in <module>
import pint
E ModuleNotFoundError: No module named 'pint'
_____________________ test_embed_dicom_and_nifti_metadata ______________________
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_heudiconv/build/tests/test_dicoms.py:57: in test_embed_dicom_and_nifti_metadata
embed_dicom_and_nifti_metadata(dcmfiles, out_prefix + ".nii.gz", infofile, None)
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_heudiconv/build/heudiconv/dicoms.py:661: in embed_dicom_and_nifti_metadata
import dcmstack as ds
/usr/lib/python3/dist-packages/dcmstack/__init__.py:7: in <module>
from .dcmstack import *
/usr/lib/python3/dist-packages/dcmstack/dcmstack.py:30: in <module>
from . import snd
/usr/lib/python3/dist-packages/dcmstack/snd.py:7: in <module>
import pint
E ModuleNotFoundError: No module named 'pint'
_____________________ test_scans_keys_reproin[invocation0] _____________________
tests/test_heuristics.py:137: in test_scans_keys_reproin
runner(args)
heudiconv/cli/run.py:30: in main
workflow(**kwargs)
heudiconv/main.py:410: in workflow
study_sessions = get_study_sessions(
heudiconv/parser.py:240: in get_study_sessions
seqinfo_dict = group_dicoms_into_seqinfos(
heudiconv/dicoms.py:338: in group_dicoms_into_seqinfos
mwinfo = validate_dicom(filename, dcmfilter)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
heudiconv/dicoms.py:175: in validate_dicom
parse_private_csa_header(mw.dcm_data, "ProtocolName", "tProtocolName")
heudiconv/dicoms.py:806: in parse_private_csa_header
import dcmstack.extract as dsextract
/usr/lib/python3/dist-packages/dcmstack/__init__.py:7: in <module>
from .dcmstack import *
/usr/lib/python3/dist-packages/dcmstack/dcmstack.py:30: in <module>
from . import snd
/usr/lib/python3/dist-packages/dcmstack/snd.py:7: in <module>
import pint
E ModuleNotFoundError: No module named 'pint'
------------------------------ Captured log call -------------------------------
WARNING heudiconv.main:main.py:362 Could not check for version updates: Connection to server could not be made
___________________________________ test_ls ____________________________________
tests/test_heuristics.py:157: in test_ls
runner(args)
heudiconv/cli/run.py:30: in main
workflow(**kwargs)
heudiconv/main.py:379: in workflow
process_extra_commands(
heudiconv/main.py:104: in process_extra_commands
study_sessions = get_study_sessions(
heudiconv/parser.py:240: in get_study_sessions
seqinfo_dict = group_dicoms_into_seqinfos(
heudiconv/dicoms.py:338: in group_dicoms_into_seqinfos
mwinfo = validate_dicom(filename, dcmfilter)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
heudiconv/dicoms.py:175: in validate_dicom
parse_private_csa_header(mw.dcm_data, "ProtocolName", "tProtocolName")
heudiconv/dicoms.py:806: in parse_private_csa_header
import dcmstack.extract as dsextract
/usr/lib/python3/dist-packages/dcmstack/__init__.py:7: in <module>
from .dcmstack import *
/usr/lib/python3/dist-packages/dcmstack/dcmstack.py:30: in <module>
from . import snd
/usr/lib/python3/dist-packages/dcmstack/snd.py:7: in <module>
import pint
E ModuleNotFoundError: No module named 'pint'
------------------------------ Captured log call -------------------------------
WARNING heudiconv.main:main.py:362 Could not check for version updates: Connection to server could not be made
____________________________ test_scout_conversion _____________________________
tests/test_heuristics.py:165: in test_scout_conversion
runner(args)
heudiconv/cli/run.py:30: in main
workflow(**kwargs)
heudiconv/main.py:410: in workflow
study_sessions = get_study_sessions(
heudiconv/parser.py:240: in get_study_sessions
seqinfo_dict = group_dicoms_into_seqinfos(
heudiconv/dicoms.py:338: in group_dicoms_into_seqinfos
mwinfo = validate_dicom(filename, dcmfilter)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
heudiconv/dicoms.py:175: in validate_dicom
parse_private_csa_header(mw.dcm_data, "ProtocolName", "tProtocolName")
heudiconv/dicoms.py:806: in parse_private_csa_header
import dcmstack.extract as dsextract
/usr/lib/python3/dist-packages/dcmstack/__init__.py:7: in <module>
from .dcmstack import *
/usr/lib/python3/dist-packages/dcmstack/dcmstack.py:30: in <module>
from . import snd
/usr/lib/python3/dist-packages/dcmstack/snd.py:7: in <module>
import pint
E ModuleNotFoundError: No module named 'pint'
------------------------------ Captured log call -------------------------------
WARNING heudiconv.main:main.py:362 Could not check for version updates: Connection to server could not be made
___________________________ test_notop[bidsoptions0] ___________________________
tests/test_heuristics.py:222: in test_notop
runner(args)
heudiconv/cli/run.py:30: in main
workflow(**kwargs)
heudiconv/main.py:410: in workflow
study_sessions = get_study_sessions(
heudiconv/parser.py:240: in get_study_sessions
seqinfo_dict = group_dicoms_into_seqinfos(
heudiconv/dicoms.py:338: in group_dicoms_into_seqinfos
mwinfo = validate_dicom(filename, dcmfilter)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
heudiconv/dicoms.py:175: in validate_dicom
parse_private_csa_header(mw.dcm_data, "ProtocolName", "tProtocolName")
heudiconv/dicoms.py:806: in parse_private_csa_header
import dcmstack.extract as dsextract
/usr/lib/python3/dist-packages/dcmstack/__init__.py:7: in <module>
from .dcmstack import *
/usr/lib/python3/dist-packages/dcmstack/dcmstack.py:30: in <module>
from . import snd
/usr/lib/python3/dist-packages/dcmstack/snd.py:7: in <module>
import pint
E ModuleNotFoundError: No module named 'pint'
------------------------------ Captured log call -------------------------------
WARNING heudiconv.main:main.py:362 Could not check for version updates: Connection to server could not be made
___________________________ test_notop[bidsoptions1] ___________________________
tests/test_heuristics.py:222: in test_notop
runner(args)
heudiconv/cli/run.py:30: in main
workflow(**kwargs)
heudiconv/main.py:410: in workflow
study_sessions = get_study_sessions(
heudiconv/parser.py:240: in get_study_sessions
seqinfo_dict = group_dicoms_into_seqinfos(
heudiconv/dicoms.py:338: in group_dicoms_into_seqinfos
mwinfo = validate_dicom(filename, dcmfilter)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
heudiconv/dicoms.py:175: in validate_dicom
parse_private_csa_header(mw.dcm_data, "ProtocolName", "tProtocolName")
heudiconv/dicoms.py:806: in parse_private_csa_header
import dcmstack.extract as dsextract
/usr/lib/python3/dist-packages/dcmstack/__init__.py:7: in <module>
from .dcmstack import *
/usr/lib/python3/dist-packages/dcmstack/dcmstack.py:30: in <module>
from . import snd
/usr/lib/python3/dist-packages/dcmstack/snd.py:7: in <module>
import pint
E ModuleNotFoundError: No module named 'pint'
------------------------------ Captured log call -------------------------------
WARNING heudiconv.main:main.py:362 Could not check for version updates: Connection to server could not be made
__________________________________ test_cache __________________________________
tests/test_main.py:325: in test_cache
runner(args)
heudiconv/cli/run.py:30: in main
workflow(**kwargs)
heudiconv/main.py:410: in workflow
study_sessions = get_study_sessions(
heudiconv/parser.py:240: in get_study_sessions
seqinfo_dict = group_dicoms_into_seqinfos(
heudiconv/dicoms.py:338: in group_dicoms_into_seqinfos
mwinfo = validate_dicom(filename, dcmfilter)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
heudiconv/dicoms.py:175: in validate_dicom
parse_private_csa_header(mw.dcm_data, "ProtocolName", "tProtocolName")
heudiconv/dicoms.py:806: in parse_private_csa_header
import dcmstack.extract as dsextract
/usr/lib/python3/dist-packages/dcmstack/__init__.py:7: in <module>
from .dcmstack import *
/usr/lib/python3/dist-packages/dcmstack/dcmstack.py:30: in <module>
from . import snd
/usr/lib/python3/dist-packages/dcmstack/snd.py:7: in <module>
import pint
E ModuleNotFoundError: No module named 'pint'
------------------------------ Captured log call -------------------------------
WARNING heudiconv.main:main.py:362 Could not check for version updates: Connection to server could not be made
____________________________ test_grouping[merged] _____________________________
tests/test_regression.py:172: in test_grouping
runner(hargs)
heudiconv/cli/run.py:30: in main
workflow(**kwargs)
heudiconv/main.py:480: in workflow
prep_conversion(
heudiconv/convert.py:215: in prep_conversion
seqinfo = group_dicoms_into_seqinfos(
heudiconv/dicoms.py:338: in group_dicoms_into_seqinfos
mwinfo = validate_dicom(filename, dcmfilter)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
heudiconv/dicoms.py:175: in validate_dicom
parse_private_csa_header(mw.dcm_data, "ProtocolName", "tProtocolName")
heudiconv/dicoms.py:806: in parse_private_csa_header
import dcmstack.extract as dsextract
/usr/lib/python3/dist-packages/dcmstack/__init__.py:7: in <module>
from .dcmstack import *
/usr/lib/python3/dist-packages/dcmstack/dcmstack.py:30: in <module>
from . import snd
/usr/lib/python3/dist-packages/dcmstack/snd.py:7: in <module>
import pint
E ModuleNotFoundError: No module named 'pint'
------------------------------ Captured log call -------------------------------
WARNING heudiconv.main:main.py:362 Could not check for version updates: Connection to server could not be made
=========================== short test summary info ============================
FAILED tests/test_dicoms.py::test_private_csa_header - ModuleNotFoundError: N...
FAILED tests/test_dicoms.py::test_embed_dicom_and_nifti_metadata - ModuleNotF...
FAILED tests/test_heuristics.py::test_scans_keys_reproin[invocation0] - Modul...
FAILED tests/test_heuristics.py::test_ls - ModuleNotFoundError: No module nam...
FAILED tests/test_heuristics.py::test_scout_conversion - ModuleNotFoundError:...
FAILED tests/test_heuristics.py::test_notop[bidsoptions0] - ModuleNotFoundErr...
FAILED tests/test_heuristics.py::test_notop[bidsoptions1] - ModuleNotFoundErr...
FAILED tests/test_main.py::test_cache - ModuleNotFoundError: No module named ...
FAILED tests/test_regression.py::test_grouping[merged] - ModuleNotFoundError:...
=========== 9 failed, 185 passed, 10 skipped, 5 deselected in 9.52s ============
E: pybuild pybuild:485: test: plugin pyproject failed with: exit code=1: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_heudiconv/build; python3.13 -m pytest -k 'not test_bvals_are_zero and not test_reproin_largely_smoke'
rm -fr -- /tmp/dh-xdg-rundir-zAXBS81O
dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.14 3.13" --parallel=2 returned exit code 13
make: *** [debian/rules:25: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess failed with exit status 2
--------------------------------------------------------------------------------
More information about the Debian-med-packaging
mailing list