[Debian-med-packaging] Bug#1136915: [help] bioperl: FTBFS: Failed 26/211 test programs. 1/11707 subtests failed.
Étienne Mollier
emollier at debian.org
Sun Jun 21 21:38:20 BST 2026
After further investigations, this:
> t/Ontology/OntologyEngine.t .. 1/31 Undefined subroutine &main::throws_ok called at t/Ontology/OntologyEngine.t line 117.
and friends looks to stem from Bio::Root::Test not reexporting
Test::Most submodules anymore. I'm not entirely sure whether
the bug is in bioperl or Test::Most, but fixing the issue from
bioperl is manageable, by patching lib/Bio/Root/Test.pm:
-8<-------------------------------------------------------------
--- bioperl.orig/lib/Bio/Root/Test.pm
+++ bioperl/lib/Bio/Root/Test.pm
@@ -150,6 +150,12 @@
our @EXPORT = (
@Test::Most::EXPORT,
+ @Test::More::EXPORT,
+ @Test::Exception::EXPORT,
+ @Test::Warn::EXPORT,
+ @Test::Deep::EXPORT,
+ @Test::Diff::EXPORT,
+ @Test::Differences::EXPORT,
#@Bio::Root::Test::Warn::EXPORT,
# Test::Warn method wrappers
-8<-------------------------------------------------------------
I will proceed with the package upload tonight.
Have a nice day, :)
--
.''`. Étienne Mollier <emollier at debian.org>
: :' : pgp: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da
`. `' sent from /dev/pts/3, please excuse my verbosity
`-
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