[Debian-med-packaging] Bug#1129792: iqtree: FTBFS: /usr/include/boost/math/tools/type_traits.hpp:206:12: error: 'is_final' has not been declared in 'std'
Santiago Vila
sanvila at debian.org
Thu Mar 5 23:13:11 GMT 2026
Package: src:iqtree
Version: 2.0.7+dfsg-2
Severity: serious
Tags: ftbfs forky sid
Dear maintainer:
During a rebuild of all packages in unstable, this package failed to build.
Below you will find the last part of the build log (probably the most
relevant part, but not necessarily). If required, the full build log
is available here:
https://people.debian.org/~sanvila/build-logs/202603/
About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.
If you cannot reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:iqtree, so that this is still
visible in the BTS web page for this package.
Thanks.
--------------------------------------------------------------------------------
[...]
debian/rules clean
dh clean
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean -Bbuild.omp
dh_auto_clean -Bbuild.serial
dh_auto_clean -Bbuild.mpi
dh override_dh_auto_clean
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_clean
debian/rules binary
dh binary
dh_update_autotools_config
dh_autoreconf
debian/rules override_dh_auto_configure
[... snipped ...]
259 | using std::remove_const_t;
| ^~~~~~~~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:261:12: error: ‘remove_volatile_t’ has not been declared in ‘std’
261 | using std::remove_volatile_t;
| ^~~~~~~~~~~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:263:12: error: ‘add_cv_t’ has not been declared in ‘std’
263 | using std::add_cv_t;
| ^~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:265:12: error: ‘add_const_t’ has not been declared in ‘std’
265 | using std::add_const_t;
| ^~~~~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:267:12: error: ‘add_volatile_t’ has not been declared in ‘std’
267 | using std::add_volatile_t;
| ^~~~~~~~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:271:12: error: ‘remove_reference_t’ has not been declared in ‘std’
271 | using std::remove_reference_t;
| ^~~~~~~~~~~~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:273:12: error: ‘add_lvalue_reference_t’ has not been declared in ‘std’
273 | using std::add_lvalue_reference_t;
| ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:275:12: error: ‘add_rvalue_reference_t’ has not been declared in ‘std’
275 | using std::add_rvalue_reference_t;
| ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:279:12: error: ‘remove_pointer_t’ has not been declared in ‘std’
279 | using std::remove_pointer_t;
| ^~~~~~~~~~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:281:12: error: ‘add_pointer_t’ has not been declared in ‘std’
281 | using std::add_pointer_t;
| ^~~~~~~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:285:12: error: ‘make_signed_t’ has not been declared in ‘std’
285 | using std::make_signed_t;
| ^~~~~~~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:287:12: error: ‘make_unsigned_t’ has not been declared in ‘std’
287 | using std::make_unsigned_t;
| ^~~~~~~~~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:291:12: error: ‘remove_extent_t’ has not been declared in ‘std’
291 | using std::remove_extent_t;
| ^~~~~~~~~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:293:12: error: ‘remove_all_extents_t’ has not been declared in ‘std’
293 | using std::remove_all_extents_t;
| ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:297:12: error: ‘decay_t’ has not been declared in ‘std’
297 | using std::decay_t;
| ^~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:299:12: error: ‘enable_if_t’ has not been declared in ‘std’
299 | using std::enable_if_t;
| ^~~~~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:301:12: error: ‘conditional_t’ has not been declared in ‘std’
301 | using std::conditional_t;
| ^~~~~~~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:303:12: error: ‘common_type_t’ has not been declared in ‘std’
303 | using std::common_type_t;
| ^~~~~~~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:305:12: error: ‘underlying_type_t’ has not been declared in ‘std’
305 | using std::underlying_type_t;
| ^~~~~~~~~~~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:397:60: error: ‘is_final’ is not a member of ‘boost::math’; did you mean ‘is_final_v’?
397 | BOOST_MATH_INLINE_CONSTEXPR bool is_final_v = boost::math::is_final<T>::value;
| ^~~~~~~~
| is_final_v
/usr/include/boost/math/tools/type_traits.hpp:397:70: error: expected primary-expression before ‘>’ token
397 | BOOST_MATH_INLINE_CONSTEXPR bool is_final_v = boost::math::is_final<T>::value;
| ^
/usr/include/boost/math/tools/type_traits.hpp:397:73: error: ‘::value’ has not been declared
397 | BOOST_MATH_INLINE_CONSTEXPR bool is_final_v = boost::math::is_final<T>::value;
| ^~~~~
In file included from /usr/include/boost/math/tools/precision.hpp:17,
from /usr/include/boost/math/special_functions/beta.hpp:17:
/usr/include/boost/math/policies/policy.hpp:945:90: error: ‘remove_reference_t’ in namespace ‘boost::math’ does not name a template type; did you mean ‘remove_reference’? [-Wtemplate-body]
945 | static constexpr bool value = (sizeof(detail::test_is_policy(static_cast<boost::math::remove_reference_t<boost::math::remove_cv_t<P>>*>(nullptr))) == sizeof(char));
| ^~~~~~~~~~~~~~~~~~
| remove_reference
/usr/include/boost/math/policies/policy.hpp:945:108: error: expected ‘>’ before ‘<’ token [-Wtemplate-body]
945 | static constexpr bool value = (sizeof(detail::test_is_policy(static_cast<boost::math::remove_reference_t<boost::math::remove_cv_t<P>>*>(nullptr))) == sizeof(char));
| ^
In file included from /usr/include/boost/math/special_functions/beta.hpp:21:
/usr/include/boost/math/tools/promotion.hpp:90:36: error: ‘common_type_t’ in namespace ‘boost::math’ does not name a template type; did you mean ‘common_type’? [-Wtemplate-body]
90 | using type = boost::math::common_type_t<T1, T2, float>;
| ^~~~~~~~~~~~~
| common_type
In file included from /usr/include/boost/math/special_functions/gamma.hpp:28,
from /usr/include/boost/math/special_functions/beta.hpp:23:
/usr/include/boost/math/special_functions/math_fwd.hpp:639:61: error: ‘boost::math::enable_if_t’ has not been declared; did you mean ‘boost::math::enable_if’?
639 | template <class T1, class T2, class Policy, boost::math::enable_if_t<policies::is_policy_v<Policy>, bool> = true>
| ^~~~~~~~~~~
/usr/include/boost/math/special_functions/math_fwd.hpp:639:72: error: expected ‘>’ before ‘<’ token
639 | template <class T1, class T2, class Policy, boost::math::enable_if_t<policies::is_policy_v<Policy>, bool> = true>
| ^
/usr/include/boost/math/special_functions/math_fwd.hpp:643:57: error: ‘boost::math::enable_if_t’ has not been declared; did you mean ‘boost::math::enable_if’?
643 | template <class T1, class T2, class T3, boost::math::enable_if_t<!policies::is_policy_v<T3>, bool> = true>
| ^~~~~~~~~~~
/usr/include/boost/math/special_functions/math_fwd.hpp:643:68: error: expected ‘>’ before ‘<’ token
643 | template <class T1, class T2, class T3, boost::math::enable_if_t<!policies::is_policy_v<T3>, bool> = true>
| ^
In file included from /usr/include/boost/math/special_functions/gamma.hpp:30:
/usr/include/boost/math/special_functions/trunc.hpp:324:44: error: ‘enable_if_t’ in namespace ‘boost::math’ does not name a template type; did you mean ‘enable_if’?
324 | BOOST_MATH_GPU_ENABLED inline boost::math::enable_if_t<boost::math::is_constructible_v<int, T>, int>
| ^~~~~~~~~~~
| enable_if
/usr/include/boost/math/special_functions/trunc.hpp:331:44: error: ‘enable_if_t’ in namespace ‘boost::math’ does not name a template type; did you mean ‘enable_if’?
331 | BOOST_MATH_GPU_ENABLED inline boost::math::enable_if_t<!boost::math::is_constructible_v<int, T>, int>
| ^~~~~~~~~~~
| enable_if
/usr/include/boost/math/special_functions/trunc.hpp:339:44: error: ‘enable_if_t’ in namespace ‘boost::math’ does not name a template type; did you mean ‘enable_if’?
339 | BOOST_MATH_GPU_ENABLED inline boost::math::enable_if_t<boost::math::is_constructible_v<long, T>, long>
| ^~~~~~~~~~~
| enable_if
/usr/include/boost/math/special_functions/trunc.hpp:346:44: error: ‘enable_if_t’ in namespace ‘boost::math’ does not name a template type; did you mean ‘enable_if’?
346 | BOOST_MATH_GPU_ENABLED inline boost::math::enable_if_t<!boost::math::is_constructible_v<long, T>, long>
| ^~~~~~~~~~~
| enable_if
/usr/include/boost/math/special_functions/trunc.hpp:354:44: error: ‘enable_if_t’ in namespace ‘boost::math’ does not name a template type; did you mean ‘enable_if’?
354 | BOOST_MATH_GPU_ENABLED inline boost::math::enable_if_t<boost::math::is_constructible_v<long long, T>, long long>
| ^~~~~~~~~~~
| enable_if
/usr/include/boost/math/special_functions/trunc.hpp:361:53: error: ‘enable_if_t’ in namespace ‘boost::math’ does not name a template type; did you mean ‘enable_if’?
361 | BOOST_MATH_GPU_ENABLED inline typename boost::math::enable_if_t<!boost::math::is_constructible_v<long long, T>, long long>
| ^~~~~~~~~~~
| enable_if
/usr/include/boost/math/special_functions/trunc.hpp:361:64: error: expected unqualified-id before ‘<’ token
361 | BOOST_MATH_GPU_ENABLED inline typename boost::math::enable_if_t<!boost::math::is_constructible_v<long long, T>, long long>
| ^
/usr/include/boost/math/special_functions/trunc.hpp:369:76: error: ‘enable_if_t’ in namespace ‘boost::math’ does not name a template type; did you mean ‘enable_if’?
369 | BOOST_MATH_GPU_ENABLED [[deprecated("Use llconvert")]] inline boost::math::enable_if_t<boost::math::is_constructible_v<long long, T>, long long>
| ^~~~~~~~~~~
| enable_if
/usr/include/boost/math/special_functions/trunc.hpp:376:85: error: ‘enable_if_t’ in namespace ‘boost::math’ does not name a template type; did you mean ‘enable_if’?
376 | BOOST_MATH_GPU_ENABLED [[deprecated("Use llconvert")]] inline typename boost::math::enable_if_t<!boost::math::is_constructible_v<long long, T>, long long>
| ^~~~~~~~~~~
| enable_if
/usr/include/boost/math/special_functions/trunc.hpp:376:96: error: expected unqualified-id before ‘<’ token
376 | BOOST_MATH_GPU_ENABLED [[deprecated("Use llconvert")]] inline typename boost::math::enable_if_t<!boost::math::is_constructible_v<long long, T>, long long>
| ^
In file included from /usr/include/boost/math/special_functions/detail/polygamma.hpp:24,
from /usr/include/boost/math/special_functions/polygamma.hpp:15,
from /usr/include/boost/math/special_functions/gamma.hpp:42:
/usr/include/boost/math/special_functions/pow.hpp:126:79: error: redeclaration ‘constexpr typename boost::math::tools::promote_args<T2>::type boost::math::pow(T, const Policy&)’ differs in ‘constexpr’ from previous declaration
126 | BOOST_MATH_GPU_ENABLED constexpr inline typename tools::promote_args<T>::type pow(T base, const Policy& policy)
| ^~~
/usr/include/boost/math/special_functions/math_fwd.hpp:1181:79: note: previous declaration ‘boost::math::tools::promote_args_t<T> boost::math::pow(T, const Policy&)’
1181 | BOOST_MATH_GPU_ENABLED BOOST_MATH_CXX14_CONSTEXPR tools::promote_args_t<T> pow(T base, const Policy& policy);
| ^~~
/usr/include/boost/math/special_functions/pow.hpp:133:79: error: redeclaration ‘constexpr typename boost::math::tools::promote_args<T2>::type boost::math::pow(T)’ differs in ‘constexpr’ from previous declaration
133 | BOOST_MATH_GPU_ENABLED constexpr inline typename tools::promote_args<T>::type pow(T base)
| ^~~
/usr/include/boost/math/special_functions/math_fwd.hpp:1184:79: note: previous declaration ‘boost::math::tools::promote_args_t<T> boost::math::pow(T)’
1184 | BOOST_MATH_GPU_ENABLED BOOST_MATH_CXX14_CONSTEXPR tools::promote_args_t<T> pow(T base);
| ^~~
/<<PKGBUILDDIR>>/alignment/alignment.cpp:3154:92: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
3154 | void convert_range(const char *str, int &lower, int &upper, int &step_size, char* &endptr) throw (string) {
| ^~~~~
/usr/include/boost/math/tools/promotion.hpp: In instantiation of ‘struct boost::math::tools::promote_args_permissive<double, double, boost::math::policies::policy<boost::math::policies::promote_double<false>, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy> >’:
/usr/include/boost/math/tools/promotion.hpp:119:16: required from ‘struct boost::math::tools::promote_args<double, double, boost::math::policies::policy<boost::math::policies::promote_double<false>, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy> >’
119 | using type = typename promote_args_permissive<Args...>::type;
| ^~~~
/usr/include/boost/math/tools/promotion.hpp:129:13: required by substitution of ‘template<class ... Args> using boost::math::tools::promote_args_t = typename boost::math::tools::promote_args::type [with Args = {double, double, boost::math::policies::policy<boost::math::policies::promote_double<false>, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>}]’
129 | using promote_args_t = typename promote_args<Args...>::type;
| ^~~~~~~~~~~~~~
/usr/include/boost/math/special_functions/beta.hpp:1720:4: required by substitution of ‘template<class RT1, class RT2, class A> boost::math::tools::promote_args_t<RT1, RT2, A> boost::math::beta(RT1, RT2, A) [with RT1 = double; RT2 = double; A = boost::math::policies::policy<boost::math::policies::promote_double<false>, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>]’
1720 | beta(RT1 a, RT2 b, A arg)
| ^~~~
/usr/include/boost/math/special_functions/binomial.hpp:47:55: required from ‘T boost::math::binomial_coefficient(unsigned int, unsigned int, const Policy&) [with T = double; Policy = policies::policy<policies::promote_double<false>, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy>]’
47 | result = static_cast<T>(k * boost::math::beta(static_cast<T>(k), static_cast<T>(n-k+1), pol));
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/math/special_functions/binomial.hpp:71:98: required from here
71 | return policies::checked_narrowing_cast<float, forwarding_policy>(binomial_coefficient<double>(n, k, forwarding_policy()), "boost::math::binomial_coefficient<%1%>(unsigned,unsigned)");
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/math/tools/promotion.hpp:105:16: error: no type named ‘type’ in ‘struct boost::math::tools::pa2_integral_already_removed<double, double, true>’
105 | using type = typename pa2_integral_already_removed<
| ^~~~
In file included from /usr/include/boost/math/special_functions/beta.hpp:33:
/usr/include/boost/math/special_functions/binomial.hpp: In instantiation of ‘T boost::math::binomial_coefficient(unsigned int, unsigned int, const Policy&) [with T = double; Policy = policies::policy<policies::promote_double<false>, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy>]’:
/usr/include/boost/math/special_functions/binomial.hpp:71:98: required from here
71 | return policies::checked_narrowing_cast<float, forwarding_policy>(binomial_coefficient<double>(n, k, forwarding_policy()), "boost::math::binomial_coefficient<%1%>(unsigned,unsigned)");
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/math/special_functions/binomial.hpp:47:55: error: no matching function for call to ‘beta(double, double, const boost::math::policies::policy<boost::math::policies::promote_double<false>, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>&)’
47 | result = static_cast<T>(k * boost::math::beta(static_cast<T>(k), static_cast<T>(n-k+1), pol));
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/math/special_functions/binomial.hpp:47:55: note: there are 3 candidates
/usr/include/boost/math/special_functions/beta.hpp:1729:4: note: candidate 1: ‘template<class RT1, class RT2> boost::math::tools::promote_args_t<RT1, RT2> boost::math::beta(RT1, RT2)’
1729 | beta(RT1 a, RT2 b)
| ^~~~
/usr/include/boost/math/special_functions/beta.hpp:1729:4: note: candidate expects 2 arguments, 3 provided
/usr/include/boost/math/special_functions/beta.hpp:1720:4: note: candidate 2: ‘template<class RT1, class RT2, class A> boost::math::tools::promote_args_t<RT1, RT2, A> boost::math::beta(RT1, RT2, A)’
1720 | beta(RT1 a, RT2 b, A arg)
| ^~~~
/usr/include/boost/math/special_functions/beta.hpp:1720:4: note: substitution of deduced template arguments resulted in errors seen above
/usr/include/boost/math/special_functions/beta.hpp:1736:4: note: candidate 3: ‘template<class RT1, class RT2, class RT3, class Policy> boost::math::tools::promote_args_t<RT1, RT2, A> boost::math::beta(RT1, RT2, RT3, const Policy&)’
1736 | beta(RT1 a, RT2 b, RT3 x, const Policy&)
| ^~~~
/usr/include/boost/math/special_functions/beta.hpp:1736:4: note: candidate expects 4 arguments, 3 provided
/usr/include/boost/math/special_functions/binomial.hpp:49:61: error: no matching function for call to ‘beta(double, double, const boost::math::policies::policy<boost::math::policies::promote_double<false>, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>&)’
49 | result = static_cast<T>((n - k) * boost::math::beta(static_cast<T>(k+1), static_cast<T>(n-k), pol));
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/math/special_functions/binomial.hpp:49:61: note: there are 3 candidates
/usr/include/boost/math/special_functions/beta.hpp:1729:4: note: candidate 1: ‘template<class RT1, class RT2> boost::math::tools::promote_args_t<RT1, RT2> boost::math::beta(RT1, RT2)’
1729 | beta(RT1 a, RT2 b)
| ^~~~
/usr/include/boost/math/special_functions/beta.hpp:1729:4: note: candidate expects 2 arguments, 3 provided
/usr/include/boost/math/special_functions/beta.hpp:1720:4: note: candidate 2: ‘template<class RT1, class RT2, class A> boost::math::tools::promote_args_t<RT1, RT2, A> boost::math::beta(RT1, RT2, A)’
1720 | beta(RT1 a, RT2 b, A arg)
| ^~~~
/usr/include/boost/math/special_functions/beta.hpp:1720:4: note: template argument deduction/substitution failed:
/usr/include/boost/math/special_functions/beta.hpp:1736:4: note: candidate 3: ‘template<class RT1, class RT2, class RT3, class Policy> boost::math::tools::promote_args_t<RT1, RT2, A> boost::math::beta(RT1, RT2, RT3, const Policy&)’
1736 | beta(RT1 a, RT2 b, RT3 x, const Policy&)
| ^~~~
/usr/include/boost/math/special_functions/beta.hpp:1736:4: note: candidate expects 4 arguments, 3 provided
/usr/include/boost/math/tools/promotion.hpp: In instantiation of ‘struct boost::math::tools::promote_args_permissive<double, double>’:
/usr/include/boost/math/tools/promotion.hpp:105:16: required from ‘struct boost::math::tools::promote_args_permissive<double, double, double>’
105 | using type = typename pa2_integral_already_removed<
| ^~~~
/usr/include/boost/math/tools/promotion.hpp:119:16: required from ‘struct boost::math::tools::promote_args<double, double, double>’
119 | using type = typename promote_args_permissive<Args...>::type;
| ^~~~
/usr/include/boost/math/tools/promotion.hpp:129:13: required by substitution of ‘template<class ... Args> using boost::math::tools::promote_args_t = typename boost::math::tools::promote_args::type [with Args = {double, double, double}]’
129 | using promote_args_t = typename promote_args<Args...>::type;
| ^~~~~~~~~~~~~~
/usr/include/boost/math/special_functions/beta.hpp:1776:4: required by substitution of ‘template<class RT1, class RT2, class RT3, class Policy> boost::math::tools::promote_args_t<RT1, RT2, A> boost::math::ibeta(RT1, RT2, RT3, const Policy&) [with RT1 = double; RT2 = double; RT3 = double; Policy = boost::math::policies::policy<boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>]’
1776 | ibeta(RT1 a, RT2 b, RT3 x, const Policy&)
| ^~~~~
/usr/include/boost/math/distributions/binomial.hpp:651:21: required from ‘RealType boost::math::cdf(const complemented2_type<binomial_distribution<RealType, Policy>, RealType>&) [with RealType = double; Policy = policies::policy<policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy>]’
651 | return ibeta(k + 1, n - k, p, Policy());
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/math/distributions/detail/derived_accessors.hpp:155:14: required from ‘typename Distribution::value_type boost::math::cdf(const complemented2_type<Dist, RealType>&) [with Distribution = binomial_distribution<>; RealType = int; typename Distribution::value_type = double]’
155 | return cdf(complement(c.dist, static_cast<value_type>(c.param)));
| ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/alignment/alignment.cpp:4604:23: required from here
4604 | pvalue_binom = cdf(complement(binom, significant_pairs-1));
| ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/math/tools/promotion.hpp:105:16: error: no type named ‘type’ in ‘struct boost::math::tools::pa2_integral_already_removed<double, double, true>’
105 | using type = typename pa2_integral_already_removed<
| ^~~~
/usr/include/boost/math/distributions/binomial.hpp: In instantiation of ‘RealType boost::math::cdf(const complemented2_type<binomial_distribution<RealType, Policy>, RealType>&) [with RealType = double; Policy = policies::policy<policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy>]’:
/usr/include/boost/math/distributions/detail/derived_accessors.hpp:155:14: required from ‘typename Distribution::value_type boost::math::cdf(const complemented2_type<Dist, RealType>&) [with Distribution = binomial_distribution<>; RealType = int; typename Distribution::value_type = double]’
155 | return cdf(complement(c.dist, static_cast<value_type>(c.param)));
| ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/alignment/alignment.cpp:4604:23: required from here
4604 | pvalue_binom = cdf(complement(binom, significant_pairs-1));
| ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/math/distributions/binomial.hpp:651:21: error: no matching function for call to ‘ibeta(double, double, double&, boost::math::policies::policy<boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>)’
651 | return ibeta(k + 1, n - k, p, Policy());
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/math/distributions/binomial.hpp:651:21: note: there are 2 candidates
/usr/include/boost/math/special_functions/beta.hpp:1792:4: note: candidate 1: ‘template<class RT1, class RT2, class RT3> boost::math::tools::promote_args_t<RT1, RT2, A> boost::math::ibeta(RT1, RT2, RT3)’
1792 | ibeta(RT1 a, RT2 b, RT3 x)
| ^~~~~
/usr/include/boost/math/special_functions/beta.hpp:1792:4: note: candidate expects 3 arguments, 4 provided
/usr/include/boost/math/special_functions/beta.hpp:1776:4: note: candidate 2: ‘template<class RT1, class RT2, class RT3, class Policy> boost::math::tools::promote_args_t<RT1, RT2, A> boost::math::ibeta(RT1, RT2, RT3, const Policy&)’
1776 | ibeta(RT1 a, RT2 b, RT3 x, const Policy&)
| ^~~~~
/usr/include/boost/math/special_functions/beta.hpp:1776:4: note: substitution of deduced template arguments resulted in errors seen above
[ 60%] Building CXX object yaml-cpp/CMakeFiles/yaml-cpp.dir/src/simplekey.cpp.o
cd /<<PKGBUILDDIR>>/build.omp/yaml-cpp && /usr/bin/c++ -DIQTREE_TERRAPHAST -DIQ_TREE -DUSE_BOOST -DUSE_BOOSTER -DYAML_CPP_NO_CONTRIB -D_USE_PTHREADS -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/yaml-cpp/include -I/<<PKGBUILDDIR>>/build.omp -I/<<PKGBUILDDIR>>/yaml-cpp/src -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -std=gnu++11 -I/usr/include/eigen3 -I/usr/include -D__SSE3 -msse3 -MD -MT yaml-cpp/CMakeFiles/yaml-cpp.dir/src/simplekey.cpp.o -MF CMakeFiles/yaml-cpp.dir/src/simplekey.cpp.o.d -o CMakeFiles/yaml-cpp.dir/src/simplekey.cpp.o -c /<<PKGBUILDDIR>>/yaml-cpp/src/simplekey.cpp
make[4]: *** [alignment/CMakeFiles/alignment.dir/build.make:96: alignment/CMakeFiles/alignment.dir/alignment.cpp.o] Error 1
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make[3]: *** [CMakeFiles/Makefile2:1147: alignment/CMakeFiles/alignment.dir/all] Error 2
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[ 60%] Building CXX object yaml-cpp/CMakeFiles/yaml-cpp.dir/src/singledocparser.cpp.o
cd /<<PKGBUILDDIR>>/build.omp/yaml-cpp && /usr/bin/c++ -DIQTREE_TERRAPHAST -DIQ_TREE -DUSE_BOOST -DUSE_BOOSTER -DYAML_CPP_NO_CONTRIB -D_USE_PTHREADS -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/yaml-cpp/include -I/<<PKGBUILDDIR>>/build.omp -I/<<PKGBUILDDIR>>/yaml-cpp/src -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -std=gnu++11 -I/usr/include/eigen3 -I/usr/include -D__SSE3 -msse3 -MD -MT yaml-cpp/CMakeFiles/yaml-cpp.dir/src/singledocparser.cpp.o -MF CMakeFiles/yaml-cpp.dir/src/singledocparser.cpp.o.d -o CMakeFiles/yaml-cpp.dir/src/singledocparser.cpp.o -c /<<PKGBUILDDIR>>/yaml-cpp/src/singledocparser.cpp
[ 61%] Building CXX object yaml-cpp/CMakeFiles/yaml-cpp.dir/src/stream.cpp.o
cd /<<PKGBUILDDIR>>/build.omp/yaml-cpp && /usr/bin/c++ -DIQTREE_TERRAPHAST -DIQ_TREE -DUSE_BOOST -DUSE_BOOSTER -DYAML_CPP_NO_CONTRIB -D_USE_PTHREADS -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/yaml-cpp/include -I/<<PKGBUILDDIR>>/build.omp -I/<<PKGBUILDDIR>>/yaml-cpp/src -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -std=gnu++11 -I/usr/include/eigen3 -I/usr/include -D__SSE3 -msse3 -MD -MT yaml-cpp/CMakeFiles/yaml-cpp.dir/src/stream.cpp.o -MF CMakeFiles/yaml-cpp.dir/src/stream.cpp.o.d -o CMakeFiles/yaml-cpp.dir/src/stream.cpp.o -c /<<PKGBUILDDIR>>/yaml-cpp/src/stream.cpp
[ 61%] Building CXX object yaml-cpp/CMakeFiles/yaml-cpp.dir/src/tag.cpp.o
cd /<<PKGBUILDDIR>>/build.omp/yaml-cpp && /usr/bin/c++ -DIQTREE_TERRAPHAST -DIQ_TREE -DUSE_BOOST -DUSE_BOOSTER -DYAML_CPP_NO_CONTRIB -D_USE_PTHREADS -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/yaml-cpp/include -I/<<PKGBUILDDIR>>/build.omp -I/<<PKGBUILDDIR>>/yaml-cpp/src -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -std=gnu++11 -I/usr/include/eigen3 -I/usr/include -D__SSE3 -msse3 -MD -MT yaml-cpp/CMakeFiles/yaml-cpp.dir/src/tag.cpp.o -MF CMakeFiles/yaml-cpp.dir/src/tag.cpp.o.d -o CMakeFiles/yaml-cpp.dir/src/tag.cpp.o -c /<<PKGBUILDDIR>>/yaml-cpp/src/tag.cpp
[ 62%] Linking CXX static library libyaml-cpp.a
cd /<<PKGBUILDDIR>>/build.omp/yaml-cpp && /usr/bin/cmake -P CMakeFiles/yaml-cpp.dir/cmake_clean_target.cmake
cd /<<PKGBUILDDIR>>/build.omp/yaml-cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/yaml-cpp.dir/link.txt --verbose=1
/usr/bin/ar qc libyaml-cpp.a "CMakeFiles/yaml-cpp.dir/src/bi [too-long-redacted] les/yaml-cpp.dir/src/tag.cpp.o"
/usr/bin/ranlib libyaml-cpp.a
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build.omp'
[ 62%] Built target yaml-cpp
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build.omp'
make[2]: *** [Makefile:159: all] Error 2
make[2]: Leaving directory '/<<PKGBUILDDIR>>/build.omp'
dh_auto_build: error: cd build.omp && make -j2 INSTALL="install --strip-program=true" VERBOSE=1 returned exit code 2
make[1]: *** [debian/rules:31: dh_auto_build_omp] Error 25
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:12: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess failed with exit status 2
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