[Debian-med-packaging] Bug#1135451: python-biopython: FTBFS: build finished with problems, 6 warnings (with warnings treated as errors).
Santiago Vila
sanvila at debian.org
Sat May 2 00:14:13 BST 2026
Package: src:python-biopython
Version: 1.86+dfsg-1
Severity: serious
Tags: ftbfs forky sid
Dear maintainer:
During a rebuild of all packages in unstable, this package failed to build.
Below you will find the last part of the build log (probably the most
relevant part, but not necessarily). If required, the full build log
is available here:
https://people.debian.org/~sanvila/build-logs/202605/
About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.
If you cannot reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:python-biopython, so that this is still
visible in the BTS web page for this package.
Thanks.
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[...]
debian/rules clean
dh clean --with python3 --buildsystem=pybuild
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
pybuild --clean -i python{version} -p "3.14 3.13" --parallel=2
I: pybuild base:385: python3.14 setup.py clean
/usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
!!
********************************************************************************
Please consider removing the following classifiers in favor of a SPDX license expression:
License :: Freely Distributable
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generating indices... genindex py-modindex done
writing additional pages... search done
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dumping search index in English (code: en)... done
dumping object inventory... done
build finished with problems, 6 warnings (with warnings treated as errors).
make[2]: *** [Makefile:20: html] Error 1
make[2]: Leaving directory '/<<PKGBUILDDIR>>/Doc'
make[1]: *** [debian/rules:75: override_dh_auto_build] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:52: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess failed with exit status 2
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