[Debian-med-packaging] Bug#1137046: libbio-db-refseq-perl: FTBFS in bookworm: Tries to access Internet during build

[Santiago Vila]

Package: src:libbio-db-refseq-perl
Version: 1.7.4-1
Severity: serious
Control: fixed -1 1.7.4-2
Tags: ftbfs bookworm

Dear maintainer:

During a rebuild of all packages in bookworm, this package failed to build.

[ Note: The bug is marked as fixed with the version in trixie/forky/sid, but
  packages in bookworm must still build in bookworm ].

[ Note: The package seems to build ok when using the unshare backend of sbuild,
  but this was not the default in bookworm yet ]

Below you will find the last part of the build log (probably the most
relevant part, but not necessarily). If required, the full build log
is available here:

https://people.debian.org/~sanvila/build-logs/bookworm/

About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.

If you cannot reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.

If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:libbio-db-refseq-perl, so that this is still
visible in the BTS web page for this package.

Thanks.

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[...]
 debian/rules build
dh build
   dh_update_autotools_config
   dh_autoreconf
   dh_auto_configure
	/usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "LD=x86_64-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro"
Checking if your kit is complete...
Looks good
Generating a Unix-style Makefile
Writing Makefile for Bio::DB::RefSeq
Writing MYMETA.yml and MYMETA.json
   dh_auto_build
	make -j2
make[1]: Entering directory '/<<PKGBUILDDIR>>'
cp lib/Bio/DB/RefSeq.pm blib/lib/Bio/DB/RefSeq.pm
Manifying 1 pod document
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_auto_test
	make -j2 test TEST_VERBOSE=1
make[1]: Entering directory '/<<PKGBUILDDIR>>'
PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t
t/00-compile.t ........... 
1..1
ok 1 - Bio/DB/RefSeq.pm loaded ok
ok
t/author-mojibake.t ...... skipped: these tests are for testing by the author
t/author-pod-coverage.t .. skipped: these tests are for testing by the author
t/author-pod-syntax.t .... skipped: these tests are for testing by the author

------------- EXCEPTION -------------
MSG: acc NM_006732 does not exist
STACK Bio::DB::WebDBSeqI::get_Seq_by_acc /usr/share/perl5/Bio/DB/WebDBSeqI.pm:203
STACK toplevel t/RefSeq.t:21
-------------------------------------

# Tests were run but no plan was declared and done_testing() was not seen.
# Looks like your test exited with 255 just after 1.
t/RefSeq.t ............... 
ok 1
Dubious, test returned 255 (wstat 65280, 0xff00)
All 1 subtests passed 

Test Summary Report
-------------------
t/RefSeq.t             (Wstat: 65280 (exited 255) Tests: 1 Failed: 0)
  Non-zero exit status: 255
  Parse errors: No plan found in TAP output
Files=5, Tests=2,  0 wallclock secs ( 0.01 usr  0.01 sys +  0.19 cusr  0.05 csys =  0.26 CPU)
Result: FAIL
Failed 1/5 test programs. 0/2 subtests failed.
make[1]: *** [Makefile:854: test_dynamic] Error 255
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_test: error: make -j2 test TEST_VERBOSE=1 returned exit code 2
make: *** [debian/rules:4: build] Error 25
dpkg-buildpackage: error: debian/rules build subprocess returned exit status 2
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