[Debian-med-packaging] sortmerna_7.1.0-1_source.changes ACCEPTED into unstable

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Accepted:

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Format: 1.8
Date: Mon, 19 Oct 2026 21:47:24 +0200
Source: sortmerna
Architecture: source
Version: 7.1.0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Changed-By: Andreas Tille <tille at debian.org>
Closes: 1072346 1144278
Changes:
 sortmerna (7.1.0-1) unstable; urgency=medium
 .
   * New upstream version
   * Standards-Version: 4.7.4 (routine-update)
   * Reflow Uploaders field (cme)
   * Remove Priority field (cme)
   * Set upstream metadata fields: Bug-Database, Repository-Browse.
   * debputy lint --auto-fix (routine-update)
   * Drop sse2-support dependency
     Closes: #1144278
   * Set upstream metadata fields: Bug-Submit, Repository-Browse.
   * d/control:
      - add build-deps librapidarchive-dev, libparasail-dev, libbbhash-dev and
        zlib1g-dev
      - drop rapidjson-dev and libconcurrentqueue-dev.
   * add rapidarchive.patch: use system librapidarchive
   * add smr-api-disable.patch: skip the self-contained static bundle,
       which needs static parasail/rocksdb not available in Debian
   * d/copyright: drop the ssw.c stanza, SSW was removed upstream
   * d/man/sortmerna.1: update for the 7.1.0 command line
   * d/tests: rewrite the autopkgtest to run the binary end-to-end against the
     upstream tiny/small reference data (FASTA, SAM, BLAST and gzip input) and
     drop the "superficial" restriction.
     Closes: #1072346
   * Build on big endian 64 architectures (upstream supports AMD64 and ARM64)
   * Drop the i386-only -msse2 workaround.  i386 cannot be built anyway because
     libbbhash-dev is not available there.
   * d/rules: build with CMake directly instead of pybuild.  Newer dh-python
     delegates to CMake, but older versions (as in trixie) run "setup.py
     clean", which the upstream setup.py does not implement, so the build
     failed on arm64.
   * d/tests: only copy the test data files that are actually needed.
   * d/salsa-ci.yml:
      - Do not build on i386
      - Do not fail on blhc
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 b65158e99d898bf477245c7567cbfb4b2c0512be 31463307 sortmerna_7.1.0.orig.tar.gz
 b30c181eba54eeb78aca18a61cb84f33ab1883b6 14016 sortmerna_7.1.0-1.debian.tar.xz
 a2d9576b221dbbf660c474cb9d50179a85c7feba 7757 sortmerna_7.1.0-1_amd64.buildinfo
Checksums-Sha256:
 7653055a70b26b3eb509651f63349076337f670e221cf3687f62da974f9dcf47 2273 sortmerna_7.1.0-1.dsc
 110917dd5b5669ad045e84195d164a11d1f65e9ee733ed425d6ee796886809da 31463307 sortmerna_7.1.0.orig.tar.gz
 e05cdf3804661e4b739f0e95dba3287dafaeeab41eede45f0e5a667fc0c189aa 14016 sortmerna_7.1.0-1.debian.tar.xz
 5567dbcf33880092391dde7fd9668d4acc857ee8e22265f8212289c7397f6d62 7757 sortmerna_7.1.0-1_amd64.buildinfo
Files:
 7d05ed24fbc6f5ec2a6dede1f4a71fe2 2273 science optional sortmerna_7.1.0-1.dsc
 2cb6e33ee672608775fe44f65fd9bcbb 31463307 science optional sortmerna_7.1.0.orig.tar.gz
 8393b19978377be51a6feb283d4bdf9f 14016 science optional sortmerna_7.1.0-1.debian.tar.xz
 9a3af88d5fbaf118ad6d7e5d4b3bff5d 7757 science optional sortmerna_7.1.0-1_amd64.buildinfo

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