[Debian-med-packaging] Bug#1147220: python-biopython-doc prevents python3-biopython from upgrading

Stepan dabonatan at proton.me
Wed Sep 9 18:33:03 BST 2026


Package: python-biopython-doc
Version: 1.88+dfsg-2
Severity: minor
X-Debbugs-Cc: dabonatan at proton.me

Dear Maintainer,

The doc package wants a specific version of the main package and
therefore doesn't let it upgrade. Probably some sort of minor
misconfiguration.

$ sudo apt upgrade python3-biopython --dry-run

Calculating upgrade... Error!   
Error: Unable to satisfy dependencies. Reached two conflicting assignments:
   1. python-biopython-doc:amd64 is selected for install
   2. python-biopython-doc:amd64 Recommends python3-biopython (= 1.88+dfsg-2)
      but none of the choices are installable:
      - python3-biopython:amd64=1.88+dfsg-2 is not selected for install because:
        1. python3-biopython:amd64=1.88+dfsg-2+b1 is selected as an upgrade
        2. python3-biopython:amd64=1.88+dfsg-2+b1 conflicts with other versions of itself


-- System Information:
Debian Release: forky/sid
  APT prefers testing
  APT policy: (900, 'testing'), (800, 'unstable')
Architecture: amd64 (x86_64)

Kernel: Linux 7.1.12+deb14-amd64 (SMP w/8 CPU threads; PREEMPT)
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8), LANGUAGE=en_US:en
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Versions of packages python-biopython-doc depends on:
ii  libjs-jquery       3.7.1+dfsg+~3.5.33-1
ii  libjs-sphinxdoc    9.1.0-7
ii  node-mathjax-full  3.2.2+~cs4.2.1-6

Versions of packages python-biopython-doc recommends:
ii  python3-biopython  1.88+dfsg-2

python-biopython-doc suggests no packages.

-- no debconf information



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